BAC Information

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BAC

Clone NameB6Ng01-257J16
Chromosome4 (Build37)
Map Location 64,794,156 - 64,919,746
singlet/doubletdoublet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257J16.bB6Ng01-257J16.g
ACCGA063259GA063260
length1,165489
definitionB6Ng01-257J16.b B6Ng01-257J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,794,156 - 64,795,323)(64,919,252 - 64,919,746)
sequence
gaattcagtacttcctaatagctggaagctctctcattaatactggaaat
aattacagctgtcacagatatctctactataaaagccctcgttgggggac
tttcctgataattatttattaagttatataaacttcataattatgtttac
tagacaaggaccactgtagacaaacttccagacagcccagtcagttactg
gcctattagtctttgttatcatgtatatcagagatgattttgctaattaa
agatattaaaattcaggggctaggatgagggtttatttggtaaagttctt
gctatgcattcataaggaccattgtttgatcttcaaaacccacactaaaa
agtgagccatagtgaatgcttgtatgtccagtgctgaggacgtggatata
gactggcctggaacttgctgatctgccagataagagtgatcagtgagtca
gccccagtccagtaagagatactgtctcaaaacaaacaaacaaacaaaca
aacaaacaaagagtggctaggtcctgaggagtgatactctgacctccata
catacacatgtaaacatacacatgcaaacatatacagacacagatgtgag
tgtacacacacacacacacacacacacacacactgacattatttactacc
aacttgaggtctttagaagcttggaaggagaatcaggaactttcgggaac
cttgtaaggtgccaagttccagcacagttggaaagtatgacagcatcaaa
gaagtgggaaatatatgacataggttgtcacagacccagtagacaaggaa
ccctatagacaaatctaaaagttcagatagatgtggcactgccccatccc
acagtacaggaattgttcttgggtctggcctgtatgcatctttctttaat
tcccattactctgtgtaataggaaaggcagcaggcagatgtgaccaagtg
ggtttataaggagaagattattattcccaaatgagacgagagaccttttt
gtacagagtttgctgagaaataaggaggatgtgattggcagcatttgaga
gagcagttcttttctctgacacatgcaaaactccaccaccccacaaacat
agaaatgatacgtcctgccagttcatctttatcaaccaaccttgtgaagg
tccagagccaaggtg

tctctcttttcctcactccctctgcctcaagcaccaaagagaacagggta
aggaatggaatacaaatgtacggccaggaaaaacaaagacagcagcaaca
gaacaataaaacaaacggagctttttgtttccattacatccatttactta
gggttccttgagggctttacattgggtggtgagcaggtgattgtgcagaa
tttgaagtctacagcaagaccaaatgatcactctgccatcctacctccgg
tgtagtagcctgatgagatttataatggaatatattccactttaagcaga
aagggatattgtgaatgaagtgtgagaagaaaagggaggagagaggtaga
gagagagagagagagagagagagaagagggcagaattgggggaggagtac
tttaaccctgggagacttttgacaagtatttgttgaatgaatgaatgaat
gaatgaatgaatgaatgactaaactagataatgcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_64794156_64795323
seq2: B6Ng01-257J16.b_42_1206

seq1  GAATTCAGTACTTCCTAATAGCTGGAAGCTCTCTCATTAATACTGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTTCCTAATAGCTGGAAGCTCTCTCATTAATACTGGAAAT  50

seq1  AATTACAGCTGTCACAGATATCTCTACTATAAAAGCCCTCGTTGGGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGCTGTCACAGATATCTCTACTATAAAAGCCCTCGTTGGGGGAC  100

seq1  TTTCCTGATAATTATTTATTAAGTTATATAAACTTCATAATTATGTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGATAATTATTTATTAAGTTATATAAACTTCATAATTATGTTTAC  150

seq1  TAGACAAGGACCACTGTAGACAAACTTCCAGACAGCCCAGTCAGTTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGGACCACTGTAGACAAACTTCCAGACAGCCCAGTCAGTTACTG  200

seq1  GCCTATTAGTCTTTGTTATCATGTATATCAGAGATGATTTTGCTAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTAGTCTTTGTTATCATGTATATCAGAGATGATTTTGCTAATTAA  250

seq1  AGATATTAAAATTCAGGGGCTAGGATGAGGGTTTATTTGGTAAAGTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAAAATTCAGGGGCTAGGATGAGGGTTTATTTGGTAAAGTTCTT  300

seq1  GCTATGCATTCATAAGGACCATTGTTTGATCTTCAAAACCCACACTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCATTCATAAGGACCATTGTTTGATCTTCAAAACCCACACTAAAA  350

seq1  AGTGAGCCATAGTGAATGCTTGTATGTCCAGTGCTGAGGACGTGGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCCATAGTGAATGCTTGTATGTCCAGTGCTGAGGACGTGGATATA  400

seq1  GACTGGCCTGGAACTTGCTGATCTGCCAGATAAGAGTGATCAGTGAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCTGGAACTTGCTGATCTGCCAGATAAGAGTGATCAGTGAGTCA  450

seq1  GCCCCAGTCCAGTAAGAGATACTGTCTCAAAACAAACAAACAAACAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTCCAGTAAGAGATACTGTCTCAAAACAAACAAACAAACAAACA  500

seq1  AACAAACAAAGAGTGGCTAGGTCCTGAGGAGTGATACTCTGACCTCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAGAGTGGCTAGGTCCTGAGGAGTGATACTCTGACCTCCATA  550

seq1  CATACACATGTAAACATACACATGCAAACATATACAGACACAGATGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATGTAAACATACACATGCAAACATATACAGACACAGATGTGAG  600

seq1  TGTACACACACACACACACACACACACACACACTGACATTATTTACTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACACACACACACACACACACACACACTGACATTATTTACTACC  650

seq1  AACTTGAGGTCTTTAGAAGCTTGGAAGGAGAATCAGGAACTTTCGGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGGTCTTTAGAAGCTTGGAAGGAGAATCAGGAACTTTCGGGAAC  700

seq1  CTTGTAAGGTGCCAAGTTCCAGCACAGTTGGAAAGTATGACAGCATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGGTGCCAAGTTCCAGCACAGTTGGAAAGTATGACAGCATCAAA  750

seq1  GAAGTGGGAAATATATGACATAGGTTGTCACAGACCCAGTAGACAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGAAATATATGACATAGGTTGTCACAGACCCAGTAGACAAGGAA  800

seq1  CCCTATAGACAAATCTAAAAGTTCAGATAGATGTGGCACTGCCCCATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGACAAATCTAAAAGTTCAGATAGATGTGGCACTGCCCCATCCC  850

seq1  ACAGTACAGGAATTGTTCTTGGGTCTGGCCTGTATGCATCTTTCTTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAGGAATTGTTCTTGGGTCTGGCCTGTATGCATCTTTCTTTAAT  900

seq1  TCCCATTACTCTGTGTAATAGGAAAGGCAGCAGGGCAGATGTGACCAAGT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCCCATTACTCTGTGTAATAGGAAAGGCAGCA-GGCAGATGTGACCAAGT  949

seq1  GGGTTTATAAGGAGAAGATTATTATTCCCAAATGAGACGAGAGACCTTTT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGTTTATAAGGAGAAGATTATTATTCCCAAATGAGACGAGAGACC-TTT  998

seq1  TTGTACAGAGGTTGCTGAGGAAATAAAGAAGGATGTGATTGGCAGCATTT  1050
      |||||||||| ||||||| ||||| ||| |||||||||||||||||||||
seq2  TTGTACAGAGTTTGCTGA-GAAAT-AAGGAGGATGTGATTGGCAGCATTT  1046

seq1  GAGAGGAAGGCAGT--CTTTCTCTGACACATGCAAAACT-CAC--ACCCA  1095
      |||||    |||||   |||||||||||||||||||||| |||   ||||
seq2  GAGAG---AGCAGTTCTTTTCTCTGACACATGCAAAACTCCACCACCCCA  1093

seq1  CAAACATAAGAAATGAATACGTTCTG-CAGTTCATC-TTATCAAACCAAA  1143
      ||||||| ||||||| |||||| ||| ||||||||| ||||| |||||| 
seq2  CAAACAT-AGAAATG-ATACGTCCTGCCAGTTCATCTTTATC-AACCAAC  1140

seq1  C-TGTGAA-GTCCAAAGAAGCAAGGTG  1168
      | |||||| ||||  |||  |||||||
seq2  CTTGTGAAGGTCC--AGAGCCAAGGTG  1165


seq1: chr4_64919252_64919746
seq2: B6Ng01-257J16.g_65_558 (reverse)

seq1  ACAGGCATTCTCTAGTTTAGTCATTCATTCATTCATTCATTCATTCATTC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATTATCTAGTTTAGTCATTCATTCATTCATTCATTCATTCATTC  50

seq1  ATTCAACAAATACTTGTCAAAAGTCTCCCAGGGTTTCTAGTACTCCTCCC  100
      ||||||||||||||||||||||||||||||||| ||  ||||||||||||
seq2  ATTCAACAAATACTTGTCAAAAGTCTCCCAGGG-TTAAAGTACTCCTCCC  99

seq1  CCCATTCTGCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTACCTCTCT  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTGCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTACCTCTCT  149

seq1  CCTCCCTTTTCTTCTCACACTTCATTCACAATATCCCTTTCTGCTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTTTCTTCTCACACTTCATTCACAATATCCCTTTCTGCTTAAAG  199

seq1  TGGAATATATTCCATTATAAATCTCATCAGGCTACTACACCGGAGGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATATTCCATTATAAATCTCATCAGGCTACTACACCGGAGGTAGG  249

seq1  ATGGCAGAGTGATCATTTGGTCTTGCTGTAGACTTCAAATTCTGCACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAGTGATCATTTGGTCTTGCTGTAGACTTCAAATTCTGCACAAT  299

seq1  CACCTGCTCACCACCCAATGTAAAGCCCTCAAGGAACCCTAAGTAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTCACCACCCAATGTAAAGCCCTCAAGGAACCCTAAGTAAATGG  349

seq1  ATGTAATGGAAACAAAAAGCTCCGTTTGTTTTATTGTTCTGTTGCTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGGAAACAAAAAGCTCCGTTTGTTTTATTGTTCTGTTGCTGCTG  399

seq1  TCTTTGTTTTTCCTGGCCGTACATTTGTATTCCATTCCTTACCCTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTTCCTGGCCGTACATTTGTATTCCATTCCTTACCCTGTTCT  449

seq1  CTTTGGTGCTTGAGGCAGAGGGAGTGAGGAAAAGAGAGAGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGCTTGAGGCAGAGGGAGTGAGGAAAAGAGAGAGAATTC  494


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