BAC Information

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BAC

Clone NameB6Ng01-258B14
Chromosome4 (Build37)
Map Location 64,872,600 - 64,989,875
singlet/doubletdoublet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B14.bB6Ng01-258B14.g
ACCGA063625GA063626
length1,1941,150
definitionB6Ng01-258B14.b B6Ng01-258B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,872,600 - 64,873,802)(64,988,717 - 64,989,875)
sequence
gaattctcaatatgtaggtacatgttctagcaactttgactccagaatct
agatatcagatcccaaacacgtcctttgcagtcctcatgctcagaagcca
tgttcaccagtgggaagctgttagttcactggtcagtttattttctcatc
caatactttgatggttttcacttgaatccaggtactttctagttgttaag
catgcaataatgaggtaagaaaaaaatgtccatgctttgactgattctta
aaatacagttggaaaagacaaaaagaaacaagtactcatctgccaaggtg
aagcagacatgtgtggccaacttaagccagcatttagccgaattcaaggt
caactgaaggcacaggtggttcctgtgtgctgtttctatggctcttcagc
tgagtcatctcatttctcttcttctcttttcttttcttttcttttctttt
cttttcttttcttttcttttcctttcttttcttttctttgcctcaattgt
agatatttctccctattaggtaatcagccacttggcttttatatttattc
atttgtccattcattcattaactaaatagccaaaatccagcataatcgtt
tcagtaaaacatttcatttaacatattattaagtgtctgttttgtgcgat
gcactgtattcagactagacatagctctgatcaactgttgagtccatttc
cccagtttaaagagaatacagacaggaatcatggacatagtcatacaaga
aaagtaccatgctataaggagcacagtaggatcatgtgaaagcccaggag
tggaaaaaagaagacggttttctagaatgaaatctacacagaactaaaat
atatggaacatctgctcactgaaatttgtcatggctcataggtagaaacc
aagctgtgtccagtaagaatgatgaatgagtaaagaaatgaatgaacaaa
caaatgaatgaagacaggcagggaaactcatcggtgtacaagctcaccac
acctcacatgtagaaccttgaagtagaaatatggcattctggctatctgt
tgtttgtacagctatttatttactattagttttcaatatttaccacaaga
tgagtccatgtgattattccatgtccatattatttatacttgctcatatt
catcattcaccactcacgcttcccacctctttaatcctatatct

gaattcatttcataatgaattattactgaacgctttagtactcagagttc
atagaggaaaaggtaagaattcacttagtgggtaagaaaggactcaagcc
tcagtactgagtttgtcagggaattctcttgtgtgggaggcactcctctg
tttagaagcatgtgagaagtagtgtgggggaaagcggtgggagtttctac
cagtctggagtactgatcagtaggtcagggcgcagatccacgtgaccttg
acctgttcttcagagtagaatcttcaggttctctagtgtaaactgtgagg
cttgggctgagagaccaccagctttctggtgtatctcacatgtaaacagg
atctgtggctactgctgcatgtattcagatatatcaagcacattggggaa
tcagagtgaagtaatcctcttattgatctggttaaaaatggggaaaggta
ccctgagatgtaggagcctaaggttaggcaataaaggtatactgtgtaga
aacagaaagaaaggcagattggggatgatggaagtgtagaagggagaggc
tgaacctggtgaaagagatgggaaatgagagaaattgaaacaatgtttca
aagtagaatcaggataaaagtaaaacaaagggtaaaaaaacaaaagtaga
ggtaagagagcaagaagagaaagaggcaggggaaggaagaaatgtggaca
ttggtgtagttggatagctgaggggtctggccaagtcctcatgctagagt
gctgagtaagcccttaaagaaagtcttctctcagctcatttgagaaacag
aacaccctgtatcaggttataccaagctatccagatctccatcggcagta
ggcaggcagaaagcaactcctgaatctcagcagaaaagctggtggctaga
gatataggtgagacttgcctgcccaccctctgatcctgttgccctagctt
ctccaagtgacaagtcattcttaagggattcatggaaacttcagactatg
atgtctcagaagactagagtaggtcccaattatcttctggagccctcgac
tgttcagaacacaagaggactagaaacaaatgttgtctttcaagtcacct
tgtagtggttaccactctaggccatgaacaatcactgtccagaagccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_64872600_64873802
seq2: B6Ng01-258B14.b_45_1238

seq1  GAATTCTCAATATGTAGGTACATGTTCTAGCAACTTTGACTCCAGAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATATGTAGGTACATGTTCTAGCAACTTTGACTCCAGAATCT  50

seq1  AGATATCAGATCCCAAACACGTCCTTTGCAGTCCTCATGCTCAGAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCAGATCCCAAACACGTCCTTTGCAGTCCTCATGCTCAGAAGCCA  100

seq1  TGTTCACCAGTGGGAAGCTGTTAGTTCACTGGTCAGTTTATTTTCTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCAGTGGGAAGCTGTTAGTTCACTGGTCAGTTTATTTTCTCATC  150

seq1  CAATACTTTGATGGTTTTCACTTGAATCCAGGTACTTTCTAGTTGTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTTGATGGTTTTCACTTGAATCCAGGTACTTTCTAGTTGTTAAG  200

seq1  CATGCAATAATGAGGTAAGAAAAAAATGTCCATGCTTTGACTGATTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATAATGAGGTAAGAAAAAAATGTCCATGCTTTGACTGATTCTTA  250

seq1  AAATACAGTTGGAAAAGACAAAAAGAAACAAGTACTCATCTGCCAAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGTTGGAAAAGACAAAAAGAAACAAGTACTCATCTGCCAAGGTG  300

seq1  AAGCAGACATGTGTGGCCAACTTAAGCCAGCATTTAGCCGAATTCAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACATGTGTGGCCAACTTAAGCCAGCATTTAGCCGAATTCAAGGT  350

seq1  CAACTGAAGGCACAGGTGGTTCCTGTGTGCTGTTTCTATGGCTCTTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAGGCACAGGTGGTTCCTGTGTGCTGTTTCTATGGCTCTTCAGC  400

seq1  TGAGTCATCTCATTTCTCTTCTTCTCTTTTCTTTTCTTTTCTTTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATCTCATTTCTCTTCTTCTCTTTTCTTTTCTTTTCTTTTCTTTT  450

seq1  CTTTTCTTTTCTTTTCTTTTCCTTTCTTTTCTTTTCTTTGCCTCAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTCTTTTCCTTTCTTTTCTTTTCTTTGCCTCAATTGT  500

seq1  AGATATTTCTCCCTATTAGGTAATCAGCCACTTGGCTTTTATATTTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTCTCCCTATTAGGTAATCAGCCACTTGGCTTTTATATTTATTC  550

seq1  ATTTGTCCATTCATTCATTAACTAAATAGCCAAAATCCAGCATAATCGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCATTCATTCATTAACTAAATAGCCAAAATCCAGCATAATCGTT  600

seq1  TCAGTAAAACATTTCATTTAACATATTATTAAGTGTCTGTTTTGTGCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAACATTTCATTTAACATATTATTAAGTGTCTGTTTTGTGCGAT  650

seq1  GCACTGTATTCAGACTAGACATAGCTCTGATCAACTGTTGAGTCCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTATTCAGACTAGACATAGCTCTGATCAACTGTTGAGTCCATTTC  700

seq1  CCCAGTTTAAAGAGAATACAGACAGGAATCATGGACATAGTCATACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTAAAGAGAATACAGACAGGAATCATGGACATAGTCATACAAGA  750

seq1  AAAGTACCATGCTATAAGGAGCACAGTAGGATCATGTGAAAGCCCAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACCATGCTATAAGGAGCACAGTAGGATCATGTGAAAGCCCAGGAG  800

seq1  TGGAAAAAAGAAGACGGTTTTCTAGAATGAAATCTACACAGAACTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAGAAGACGGTTTTCTAGAATGAAATCTACACAGAACTAAAAT  850

seq1  ATATGGAACATCTGCTCACTGAAATTTGTCATGGCTCATAGGTAGAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAACATCTGCTCACTGAAATTTGTCATGGCTCATAGGTAGAAACC  900

seq1  AAGCTGTGTCCAGTAAGAATGATGAATGAGTAAAGAAATGAATGAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTCCAGTAAGAATGATGAATGAGTAAAGAAATGAATGAACAAA  950

seq1  CAAATGAATGAAGACAGGCAGGGAAACTCATCGGTGTACAAGCTCAACCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAATGAATGAAGACAGGCAGGGAAACTCATCGGTGTACAAGCTC-ACCA  999

seq1  CACCTCACATGTAGAACCTTGAAGTAGAAATAATGGCATTCTGGCTTATC  1050
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CACCTCACATGTAGAACCTTGAAGTAGAAAT-ATGGCATTCTGGC-TATC  1047

seq1  TGTTTGGTTTGTACAGCTATTTATTTACTATTAAGTTTTCAATTATTACA  1100
      ||||  |||||||||||||||||||||||||| ||||||||||  |||| 
seq2  TGTT--GTTTGTACAGCTATTTATTTACTATT-AGTTTTCAATATTTAC-  1093

seq1  CAAAGAATGAGTTCATTGTGATAATTCCATGTTCCCATATTA-TTATACT  1149
      || |  |||||| || |||||| |||||||||  |||||||| |||||| 
seq2  CACAAGATGAGTCCA-TGTGATTATTCCATGT--CCATATTATTTATAC-  1139

seq1  TTGCTCATATTCATCCCATCACCCCACTCACGCTTTCCCAACTCTTT---  1196
      ||||||||||||||  |||  | |||||||||| |||||| ||||||   
seq2  TTGCTCATATTCAT--CAT-TCACCACTCACGC-TTCCCACCTCTTTAAT  1185

seq1  --TATATCT  1203
        |||||||
seq2  CCTATATCT  1194


seq1: chr4_64988717_64989875
seq2: B6Ng01-258B14.g_66_1215 (reverse)

seq1  TCTGGCTCCTGGACAGATGATTGTTCATGCCCTAGAGTGGT-ACCACTAC  49
      ||||||| |||||||| |||||||||||| ||||||||||| ||||||| 
seq2  TCTGGCTTCTGGACAG-TGATTGTTCATGGCCTAGAGTGGTAACCACTA-  48

seq1  CAAGTTGACCTTGAAGACAACCATTGTTTCCTAGTTCCTCTTGTGTTTCC  99
      |||| |||| |  ||||||||  |||||| |||| ||||||||||||  |
seq2  CAAGGTGACTTGAAAGACAACATTTGTTT-CTAG-TCCTCTTGTGTT--C  94

seq1  TGACCAGTCGAGGGCTCCAG-AGATAATTTGGGACCTACTCTAGTCTTCT  148
      ||| |||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TGAACAGTCGAGGGCTCCAGAAGATAA-TTGGGACCTACTCTAGTCTTCT  143

seq1  GAGACATCATAGTTCTGAAGTTTCCATGAATCCCTTTAAGAATGACTTGT  198
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  GAGACATCATAG-TCTGAAGTTTCCATGAATCCC-TTAAGAATGACTTGT  191

seq1  CACCTTGGAGAAGCTAGGGCAACAGGATCAGAGGGTGGGCAGGCAAGTCT  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTTGGAGAAGCTAGGGCAACAGGATCAGAGGGTGGGCAGGCAAGTCT  240

seq1  CACCTATATCTCTAGCCACCAGCTTTTCTGCCTGAGATTCAGGAGTTGCT  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACCTATATCTCTAGCCACCAGCTTTTCTG-CTGAGATTCAGGAGTTGCT  289

seq1  TTCTGCCTGCCTACTGCCGATGGAGATCTGGATAGCTTGGTATAACCTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTGCCTACTGCCGATGGAGATCTGGATAGCTTGGTATAACCTGA  339

seq1  TACAGGGTGTTCTGTTTCTCAAATGAGCTGAGAGAAGACTTTCTTTAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTGTTCTGTTTCTCAAATGAGCTGAGAGAAGACTTTCTTTAAGG  389

seq1  GCTTACTCAGCACTCTAGCATGAGGACTTGGCCAGACCCCTCAGCTATCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTCAGCACTCTAGCATGAGGACTTGGCCAGACCCCTCAGCTATCC  439

seq1  AACTACACCAATGTCCACATTTCTTCCTTCCCCTGCCTCTTTCTCTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACACCAATGTCCACATTTCTTCCTTCCCCTGCCTCTTTCTCTTCTT  489

seq1  GCTCTCTTACCTCTACTTTTGTTTTTTTACCCTTTGTTTTACTTTTATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTACCTCTACTTTTGTTTTTTTACCCTTTGTTTTACTTTTATCC  539

seq1  TGATTCTACTTTGAAACATTGTTTCAATTTCTCTCATTTCCCATCTCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTACTTTGAAACATTGTTTCAATTTCTCTCATTTCCCATCTCTTT  589

seq1  CACCAGGTTCAGCCTCTCCCTTCTACACTTCCATCATCCCCAATCTGCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTTCAGCCTCTCCCTTCTACACTTCCATCATCCCCAATCTGCCT  639

seq1  TTCTTTCTGTTTCTACACAGTATACCTTTATTGCCTAACCTTAGGCTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGTTTCTACACAGTATACCTTTATTGCCTAACCTTAGGCTCCT  689

seq1  ACATCTCAGGGTACCTTTCCCCATTTTTAACCAGATCAATAAGAGGATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAGGGTACCTTTCCCCATTTTTAACCAGATCAATAAGAGGATTA  739

seq1  CTTCACTCTGATTCCCCAATGTGCTTGATATATCTGAATACATGCAGCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCTGATTCCCCAATGTGCTTGATATATCTGAATACATGCAGCAG  789

seq1  TAGCCACAGATCCTGTTTACATGTGAGATACACCAGAAAGCTGGTGGTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACAGATCCTGTTTACATGTGAGATACACCAGAAAGCTGGTGGTCT  839

seq1  CTCAGCCCAAGCCTCACAGTTTACACTAGAGAACCTGAAGATTCTACTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCAAGCCTCACAGTTTACACTAGAGAACCTGAAGATTCTACTCT  889

seq1  GAAGAACAGGTCAAGGTCACGTGGATCTGCGCCCTGACCTACTGATCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAGGTCAAGGTCACGTGGATCTGCGCCCTGACCTACTGATCAGT  939

seq1  ACTCCAGACTGGTAGAAACTCCCACCGCTTTCCCCCACACTACTTCTCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGACTGGTAGAAACTCCCACCGCTTTCCCCCACACTACTTCTCAC  989

seq1  ATGCTTCTAAACAGAGGAGTGCCTCCCACACAAGAGAATTCCCTGACAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTAAACAGAGGAGTGCCTCCCACACAAGAGAATTCCCTGACAAA  1039

seq1  CTCAGTACTGAGGCTTGAGTCCTTTCTTACCCACTAAGTGAATTCTTACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACTGAGGCTTGAGTCCTTTCTTACCCACTAAGTGAATTCTTACC  1089

seq1  TTTTCCTCTATGAACTCTGAGTACTAAAGCGTTCAGTAATAATTCATTAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTATGAACTCTGAGTACTAAAGCGTTCAGTAATAATTCATTAT  1139

seq1  GAAATGAATTC  1159
      |||||||||||
seq2  GAAATGAATTC  1150


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