BAC Information

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BAC

Clone NameB6Ng01-258D05
Chromosome4 (Build37)
Map Location 145,589,751 - 145,765,756
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258D05.bB6Ng01-258D05.g
ACCGA063699GA063700
length1,1831,196
definitionB6Ng01-258D05.b B6Ng01-258D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,589,751 - 145,590,936)(145,764,555 - 145,765,756)
sequence
gaattctaaaagagatggagttccagttgatcttgtcttttcaactgtgt
tacatcaaaaaagttgctagccaaagtggtttcataaaaatatccaaaga
ctgctggccactgacaacaaaaggggttgcttttcacaaactgacaataa
gtcttcattgctaaagacagggctgacacaaaacactgtatatgaaaagg
gcaaactggtgcctgcaagaacattgactcttatgttccagtgtcctcct
tatggaaggtgctttaaaaggtacacaaagtgaaatatatacatagaacc
aaccaaaaagacgttgatctataatttttcctttcagcaaaatatgctta
gggcaatgatgtcatgaatttactgagaataaccaatcaatgtctaattt
gacttaaataccaaaagcattctggttaaatgttatatatctatatacac
aagggtgcttggtcatgagtgtactgggagtgtttgtggacacaccagtg
ttataagtaatgaaaaggtttctatatactataaagcataaaactttcat
tggagcagtctcccagctatcagatttaagacaattcaagcctatgacct
catacatagatacctcttaacctctctcctgctccgttctcatctatctg
ttctcttctctgtctcccactaaatctcctacatctgcattctcctctct
acatctcttttaatattcagaaattcggccctccaattcttgtaccagga
attggatgtcaggttttttcttacaagcaatcaggtgtgaaacatcacca
gaacttctctggattgcctcaaggcttagagagctgcttgccattcaatt
atctcagcagggggtgagaggagtatttacaaatgtaaagctggtgatgg
gccatagaaatgacaatatcaagatcctgctagttctctgcccataaaat
ttgaaaatacagacacaccccactgaaagattggaaaattcaccctcaat
acatgtggagaatccaagcaggccagagaggcaattggggcccacaggtg
gatgtccactttgatgtagactagttctgacctcaatgaagaggaattac
aatctgcccagtgttctgattgcttggatatgccagcagccactgcaagt
ttcatgttctatagaagtcaagccaatgtaatc
gaattccaggaacctgttgaatattgggcgggtccagaaggcggggctag
gcagaagtgaagggaagttcctaggtttcatcattctctttgtatcttgg
ttgccttgtggtcaggaagtcctggagggaaacttgtgcctagtattagt
ggaacatgaaaccttccttaagcagcagttgctgtgctggcctcctagga
cattgagcagctggtcctgtcaccttccaggtcagaggagctgttgtact
ggttaatgggcaggagcagggcaggtgtgtggagcatggttgcattttct
acctccactatctcaatattgttgtggatatcttaccattatcaggaagt
ttgagatcctgtgaattaggttcatggtgatgttttaattaattttatgg
ttgccagaatatatatacataatatattattattattattcatttaaata
accccgtagatctttggccttctctggagtttgtgtaccgggatggttgt
ctttgcaaaagccttcatagagctcctcgaattcaaattcattcatgctt
tcttaactcgcctgttcctccatttgccatttcatttccctttctccagg
aactgaataggcatccctagagagctttgtagatatttgtcatatggggg
accagtgcagatttgattgaattagaaaatattctttttaaagtaccgtc
atgttgctgtacatattaatattaacctagcaaagttatagtctccgtta
gtttaacactgaggtatatgcagtctttgatgtaaatacagcattgagaa
atgtgtcttcataggcttagttattaatgtcacaccttaggtttgaataa
aagacaggattgcagcaggtacagctgaggagaagatatatagtaaggtt
ctgtcaaccctgagtgttccagagaaaaactaattgtaccatgtgggcaa
gttttataaaaataatacatcgtgaccaagagatggatttggtcacaatg
ctacaggcagtttaatagggcattgtagtttctgtgaaggctttatcatt
ttccaagaacataaacctgcagcaatgcacgaagaatacctgattcttat
ctggcggtgcaggttaattttttggcttttcagtcttgggggaaaaaagc
aattcgagaatctgatggttcgaacgaccagaccatcaggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145589751_145590936
seq2: B6Ng01-258D05.b_43_1225

seq1  GAATTCTGAAAGAGATGGAGTTCCAGTTGATCTTGTCTTTTCCACTGTGT  50
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  GAATTCTAAAAGAGATGGAGTTCCAGTTGATCTTGTCTTTTCAACTGTGT  50

seq1  TACATCAAGAAAGTTGCTAGCCAAAGTGGTTTCATAAAAATATCCAAAGA  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAAAAAGTTGCTAGCCAAAGTGGTTTCATAAAAATATCCAAAGA  100

seq1  CTGCTGGCCACTGACAACAAAAGGGGTTGCTTTTAACAAACTGACAATAA  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGCTGGCCACTGACAACAAAAGGGGTTGCTTTTCACAAACTGACAATAA  150

seq1  GTCTTCATTGCTAAAGACAGGGCTGACACAAAACACTGTATATGAAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATTGCTAAAGACAGGGCTGACACAAAACACTGTATATGAAAAGG  200

seq1  GCAAACTGGTGCCTGCAAGAACATTGACTCTTATGTTCCAGTGTCCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGGTGCCTGCAAGAACATTGACTCTTATGTTCCAGTGTCCTCCT  250

seq1  TATGGAAGGTGCTTTGAAAGGTACACAAAGTGAAATATATACACAGAACC  300
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TATGGAAGGTGCTTTAAAAGGTACACAAAGTGAAATATATACATAGAACC  300

seq1  AACCAAAAAGACGTTGATCTATAATTTTTCCTTTCAGCAAAATATGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAGACGTTGATCTATAATTTTTCCTTTCAGCAAAATATGCTTA  350

seq1  GGGCAATGATGTCATGAATTTACTGGGAATAACCAATCAATGTCTAATTT  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGCAATGATGTCATGAATTTACTGAGAATAACCAATCAATGTCTAATTT  400

seq1  GACTTAAATACCAAAAGCACTCTGGTTAAATGTAATATATCTATACACAC  450
      ||||||||||||||||||| ||||||||||||| ||||||||||| ||||
seq2  GACTTAAATACCAAAAGCATTCTGGTTAAATGTTATATATCTATATACAC  450

seq1  AAGGGTGCTTGGTCATGAGTGTACTGGGAGTGTTTGTGGACACACCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGCTTGGTCATGAGTGTACTGGGAGTGTTTGTGGACACACCAGTG  500

seq1  TTATAAGTAATGAAAAGGTTTCTATATACTATAAAGCATAAAACTTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTAATGAAAAGGTTTCTATATACTATAAAGCATAAAACTTTCAT  550

seq1  TGGAGCAGTCTCCCAGCTATCATTTAGATTTAAGACAATTCAAGCCTATG  600
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  TGGAGCAGTCTCCCAGCTATC----AGATTTAAGACAATTCAAGCCTATG  596

seq1  ACCTCATACATAGATACCTCTTAACCTCTCTCCCGCTCCGTTCTCATCTA  650
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTCATACATAGATACCTCTTAACCTCTCTCCTGCTCCGTTCTCATCTA  646

seq1  TCTGTTATCTTCTCTGTCTCCCACTAAATCTCCTACATCTGCATTCTCCT  700
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCTTCTCTGTCTCCCACTAAATCTCCTACATCTGCATTCTCCT  696

seq1  CTCTACATCTCTTTTAATATCCAGAAATTCGGCCCTCCAATTCTTGTCCC  750
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  CTCTACATCTCTTTTAATATTCAGAAATTCGGCCCTCCAATTCTTGTACC  746

seq1  AGGAATTGGATGTCAGGTTTTTTTCTTAGAAGCAATCAGGTGTGAAACAT  800
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AGGAATTGGATGTCAGG-TTTTTTCTTACAAGCAATCAGGTGTGAAACAT  795

seq1  CACCAGAACTTCTCTGGATTGCCTTTAGGTATAGAGAGCTGCTTGCCATT  850
      ||||||||||||||||||||||||  |||  |||||||||||||||||||
seq2  CACCAGAACTTCTCTGGATTGCCTCAAGGCTTAGAGAGCTGCTTGCCATT  845

seq1  CAAGTATCTCAGCA-GGGGTGGGAGGAGTATTTACAAATGTAAAGCTGGT  899
      ||| |||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CAATTATCTCAGCAGGGGGTGAGAGGAGTATTTACAAATGTAAAGCTGGT  895

seq1  GATGGGCCATAGAAATGACAATATCAAGATCCTGCTAGTTCTCTGCCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATGGGCCATAGAAATGACAATATCAAGATCCTGCTAGTTCTCTGCCCAT  945

seq1  AAAAATTTGAAAATACAGACACA-CCCACTGAAAAGGTTAGGAAATTCA-  997
       |||||||||||||||||||||| ||||||| |||| || | ||||||| 
seq2  -AAAATTTGAAAATACAGACACACCCCACTG-AAAGATTGGAAAATTCAC  993

seq1  CCTCCATACATGTGGAGAATCCAAGTAGGCCAGAAGAGGAAATTGGGGCC  1047
      |||| |||||||||||||||||||| ||||||| ||||| ||||||||||
seq2  CCTCAATACATGTGGAGAATCCAAGCAGGCCAG-AGAGGCAATTGGGGCC  1042

seq1  CACAGGTTGGAATGT-CACTTTGATGTAGACTAG-TCTGACCTTAAATGA  1095
      |||||||  | |||| |||||||||||||||||| ||||||| | |||||
seq2  CACAGGT--GGATGTCCACTTTGATGTAGACTAGTTCTGACC-TCAATGA  1089

seq1  AGAATAA-TAC-ACCTGCCCTAGTGTTCTGATTGCTGGGATTCTGCCAGC  1143
      |||  || ||| | |||||| ||||||||||||||| ||| | |||||||
seq2  AGAGGAATTACAATCTGCCC-AGTGTTCTGATTGCTTGGA-TATGCCAGC  1137

seq1  AGCACTTGCAAGTTTCATG-TCTATAG-AGTCAAG-CAATGTAATC  1186
      |||   ||||||||||||| ||||||| ||||||| ||||||||||
seq2  AGCCACTGCAAGTTTCATGTTCTATAGAAGTCAAGCCAATGTAATC  1183

seq1: chr4_145764555_145765756
seq2: B6Ng01-258D05.g_66_1261 (reverse)

seq1  CCCCCACCTGATGGCCTGGTTCAGTCTGGACCCAATCAGATATCTCTGAA  50
      |||||||||||||| |||||   ||  | |||  ||||||| ||||  | 
seq2  CCCCCACCTGATGGTCTGGT--CGTTCGAACC--ATCAGAT-TCTCGAAT  45

seq1  TGCTTTCT--CCCCCAGACTGAAAAGCC-AAAAATTAA-CTGCACCGCCA  96
      |||||| |  |||| ||||||||||||| ||||||||| |||||||||||
seq2  TGCTTTTTTCCCCCAAGACTGAAAAGCCAAAAAATTAACCTGCACCGCCA  95

seq1  GCATAAGAACCAGGTA-TCTTCGTGCATTGCTGCAGGGTTATGTCTTGGG  145
      | ||||||| |||||| |||||||||||||||||||| ||||||  | ||
seq2  G-ATAAGAATCAGGTATTCTTCGTGCATTGCTGCAGGTTTATGTTCTTGG  144

seq1  AAAATGATAAAGCC-TCACAGGAAACTACAATGGCCTATTAAACTGCCTG  194
      |||||||||||||| ||||| |||||||||||| ||||||||||||||||
seq2  AAAATGATAAAGCCTTCACA-GAAACTACAATGCCCTATTAAACTGCCTG  193

seq1  TAGCA-TGTGACCAAATCCATCTCTTGGTCACGATGTATTA-TTTTATAA  242
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGCATTGTGACCAAATCCATCTCTTGGTCACGATGTATTATTTTTATAA  243

seq1  AACTTGCCCACATGGTACAATTAGTTTTTCTCTGGAAACACTCAGGGTTG  292
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACTTGCCCACATGGTACAATTAGTTTTTCTCTGG-AACACTCAGGGTTG  292

seq1  ACAGAACC-TACTATATATCTTCTCCTCAACTGTACCTTGCTGCAATCCT  341
      |||||||| |||||||||||||||||||| ||||||| ||||||||||||
seq2  ACAGAACCTTACTATATATCTTCTCCTCAGCTGTACC-TGCTGCAATCCT  341

seq1  GTCTTTTATTCAAACCTAAGGTGTGACATTAATAACTAAGCCTATGAAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTATTCAAACCTAAGGTGTGACATTAATAACTAAGCCTATGAAGA  391

seq1  CACATTTCTCAATGCTGTATTTACATCAAAGACTGCATATACCTCAGTGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCTCAATGCTGTATTTACATCAAAGACTGCATATACCTCAGTGT  441

seq1  TAAACTAACGGAGACTATAACTTTGCTAGGTTAATATTAATATGTACAGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAACGGAGACTATAACTTTGCTAGGTTAATATTAATATGTACAGC  491

seq1  AACATGACGGTACTTTAAAAAGAATATTTTCTAATTCAATCAAATCTGCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACGGTACTTTAAAAAGAATATTTTCTAATTCAATCAAATCTGCA  541

seq1  CTGGTCCCCCATATGACAAATATCTACAAAGCTCTCTCTGGGTGCCTATT  591
      |||||||||||||||||||||||||||||||||||||  || ||||||||
seq2  CTGGTCCCCCATATGACAAATATCTACAAAGCTCTCTAGGGATGCCTATT  591

seq1  CAGTTCCCTGGAGAAAGGGAAATGAAATGGCAAATGGAGGAACAGGCGAA  641
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTT-CCTGGAGAAAGGGAAATGAAATGGCAAATGGAGGAACAGGCGAG  640

seq1  TTAAGAAAGTATGAATGAATTTGAATTTGAGGAGCTCTATGAAGGCTTTT  691
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  TTAAGAAAGCATGAATGAATTTGAATTCGAGGAGCTCTATGAAGGCTTTT  690

seq1  GCAAAGACAACCATCCCAGTACACAAACTCCAGAGAAGGCCAAAGATCTA  741
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAAAGACAACCATCCCGGTACACAAACTCCAGAGAAGGCCAAAGATCTA  740

seq1  CGGGGTTATTTAAATGAATAATAATAATAATAATATATTATGTATATATA  791
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  CGGGGTTATTTAAATG---AATAATAATAATAATATATTATGTATATATA  787

seq1  TTTCTGGCAACCATAAAATTAATTAAAACATCACCATGAAACCTAATTCA  841
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -TTCTGGCAACCATAAAATTAATTAAAACATCACCATG-AACCTAATTCA  835

seq1  CAGGATCTCAAACTTCCTGATAATGGTAAGATATCCACAACAGAATTGAG  891
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  CAGGATCTCAAACTTCCTGATAATGGTAAGATATCCACAACAATATTGAG  885

seq1  ATAGTGGAGGTAGAAAATGCAACCATGCTCCACACACCTGCCCTGCTCCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGAGGTAGAAAATGCAACCATGCTCCACACACCTGCCCTGCTCCT  935

seq1  GCCCATTAACCAGTACAACAGCTCCTCTGACCTGGAAGGTGACAGGACCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTAACCAGTACAACAGCTCCTCTGACCTGGAAGGTGACAGGACCA  985

seq1  GCTGCTCAATGTCCTAGGAGGCCAGCACAGCAACTGCTGCTTAAGGAAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCAATGTCCTAGGAGGCCAGCACAGCAACTGCTGCTTAAGGAAGG  1035

seq1  TTTCATGTTCCACTAATACTAGGCACAAGTTTCCCTCCAGGACTTCCTGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTCCACTAATACTAGGCACAAGTTTCCCTCCAGGACTTCCTGA  1085

seq1  CCACAAGGCAACCAAGATACAAAGAGAATGATGAAACCTAGGAACTTCCC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGCAACCAAGATACAAAGAGAATGATGAAACCTAGGAACTTCCC  1135

seq1  TTCACTTCTGCCTAGCCCCGCCTTCTGGACCCGCCCAATATTCAACAGGT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCTGCCTAGCCCCGCCTTCTGGACCCGCCCAATATTCAACAGGT  1185

seq1  TCCTGGAATTC  1202
      |||||||||||
seq2  TCCTGGAATTC  1196