BAC Information

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BAC

Clone NameB6Ng01-258I21
Chromosome4 (Build37)
Map Location 146,553,756 - 146,765,191
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I21.bB6Ng01-258I21.g
ACCGA063964GA063965
length1,1711,130
definitionB6Ng01-258I21.b B6Ng01-258I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,764,012 - 146,765,191)(146,553,756 - 146,554,520)
sequence
gaattctctgatgctttctcagagtgaatttgtcagtaaagcatttgtcg
cattcactacatttgtaaggtttctctcctgaatgaattctacgatgaat
actaagatgggatggttgggtaaagcatttgtcacactcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaactctcagactgcctttg
tcagtaaagcatttgtcacattcattacatttgtaaggtttctctcctgt
atgaattctctgatgctttctcagagtgcatttgtcagtaaagcatttgt
cgcattcactacatttgtaaggtttctctcctgaatgaattgtatgatga
atactaagatgggaaggttgggtaaagcatttgtcactttcactatattt
gtaagatttctttcctggataaattctctgctgactttgaagattgtcac
tctgagtaaagcatttgtcaaattcaccacaagtgtaagtgttcatttca
ctattgttttgtctcacaatgggtttatgtttagaaaccaaaacctcatc
aagatttttatttctgttgtgttctttcttctctacgtgggttccttgat
tgagactaatgatagaagacccctttaaacagtttacacagtctttatat
gtgcaaacttgtttagtggtcccagttttatgtctttttaggtttgagga
ttggagagtggcatctctgtggttagttttatgaggtgtactttcggagg
attcatgaattatattgctagactcattacatttaaaagacttctcttgg
atatgcccatgctcattgaaaatgtgctgtgtgtcttgttccacgacctt
ctccttctcatagtttccacatatgcagtgattttctgaaaaaaggggga
attagggataacagggattacttatatgaggagtaagtatgatccaataa
tcactgttctatgtatcatactctcaggagaggtttttcctttttttaat
cattgcatggatcctcagaagtacctcaaatcctgaatctatatcaatgc
aaaagtgataatagccttctagattgtacccaccacccatataaaaaagg
ttaccggaattgcttcttctaaggaaataagagagtgtccttttatccta
gtacaaagagtgacgaaactg
gaattcatcagagaaatcatacaggtgagaaaccttacaaatgtagtcga
tgtgacaaatcctttactgaaaatggccatctgagaattcatcagagaat
tcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatccttta
ctaaaaaattcagtttgaggattcatcagagaattcatacaggagagaaa
ccttacaaatgcagtgaatgtgaaaaatgctttactttcaaaggcagtct
gaggattcatcagagaattcatacaggagagaaaccctacaaatgtagtg
aatgtgacaaatcctttactgaaaatggctgtttgagaattcatcagaga
attcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgctt
tactttcaaaggcagtctgaggattcatcagagaattcatacaggagaga
aaccttacaaatgcactgaatgtgacaaatcctttactgaaaagggcaaa
ctgagaattcatcagagaattcatacaggagagaaaccttacaaatgtag
tgaatgtgacaaatgctttactgaaaaaggccatcagagaattcatacag
gagagataccttacaaatagtttgtatgtgacagatacaatacaatgtca
gtctgagaaatcatcagtttttaatacagtagagaatatttataaatgaa
gtgaatgagacaatcctttaccaagatatatcatcttaaaaatcattaga
gaatacttacagaagagaaacttttcaattatatcgaaggtatgaatcct
ttactcttggcctatttcctagaatgttaacagtgaatacttacaggata
caaacttaactcatgcattgtatgaagaaatatctttgacttcatttcag
gtcaaagagaatatctaataactttttaggggaaagtattttctgttggg
gaagtgtggcctgtgttttattcacgttctattctgacacaattgagctc
acactagagattagtatgattatgaaatcatgtgaaacttcatgcaatgt
tcaattcttaaataatgtcactattttttgcttgaagaacctctgaaatg
taaaatgtagaagcttttcatggacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146764012_146765191
seq2: B6Ng01-258I21.b_51_1219 (reverse)

seq1  CAGTTTCTGCTCCACTCTTTGTCCCTGTAGATAAAGGGACACTCT-TTAT  49
      ||||||   |  |||||||||| |  |  |||||| ||||||||| ||||
seq2  CAGTTT---CGTCACTCTTTGTACTAG--GATAAAAGGACACTCTCTTAT  45

seq1  TTCCTTTAGATAGGAGCAATTCTGGGTTAACCTTTTTTATATGGGTTGGT  99
      |||| ||||| || |||||||| ||  ||||||||||||||||||| |  
seq2  TTCC-TTAGA-AGAAGCAATTCCGG--TAACCTTTTTTATATGGGTGGTG  91

seq1  GGTACAATCTTAGAAGGCTATTATCACTTTTGCCATTTGATATAGA-TCA  148
      ||||||||| |||||||||||||||||||||||   |||||||||| |||
seq2  GGTACAATC-TAGAAGGCTATTATCACTTTTGC--ATTGATATAGATTCA  138

seq1  -GATTTGAGGTACTTCTGAGGATCCATGCAATGATTAAAAAAAGGAAAAA  197
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAGGTACTTCTGAGGATCCATGCAATGATTAAAAAAAGGAAAAA  188

seq1  CCTCTCTTGAGAGTATGAATACATAGAACAGTGATTATTGGATCATACTT  247
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTCTCCTGAGAGTATG-ATACATAGAACAGTGATTATTGGATCATACTT  237

seq1  ACTCCTCATATAAGTAATCCCTGTTATCCCTAATTCCCCCTTTTTTTCAG  297
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTCCTCATATAAGTAATCCCTGTTATCCCTAATTCCCCC-TTTTTTCAG  286

seq1  AAAATCACTGCATATGTGGAAACTATGAGAAGGAGAAGGTCGTGGAACAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACTGCATATGTGGAAACTATGAGAAGGAGAAGGTCGTGGAACAA  336

seq1  GACACACAGCACATTTTCAATGAGCATGGGCATATCCAAGAGAAGTCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGCACATTTTCAATGAGCATGGGCATATCCAAGAGAAGTCTTT  386

seq1  TAAATGTAATGAGTCTAGCAATATAATTCATGAATCCTCCGAAAGTACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAATGAGTCTAGCAATATAATTCATGAATCCTCCGAAAGTACAC  436

seq1  CTCATAAAACTAACCACAGAGATGCCACTCTCCAATCCTCAAACCTAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAACTAACCACAGAGATGCCACTCTCCAATCCTCAAACCTAAAA  486

seq1  AGACATAAAACTGGGACCACTAAACAAGTTTGCACATATAAAGACTGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAACTGGGACCACTAAACAAGTTTGCACATATAAAGACTGTGT  536

seq1  AAACTGTTTAAAGGGGTCTTCTATCATTAGTCTCAATCAAGGAACCCACG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTTAAAGGGGTCTTCTATCATTAGTCTCAATCAAGGAACCCACG  586

seq1  TAGAGAAGAAAGAACACAACAGAAATAAAAATCTTGATGAGGTTTTGGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGAAAGAACACAACAGAAATAAAAATCTTGATGAGGTTTTGGTT  636

seq1  TCTAAACATAAACCCATTGTGAGACAAAACAATAGTGAGATGAACACTTA  697
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTAAACATAAACCCATTGTGAGACAAAACAATAGTGAAATGAACACTTA  686

seq1  CACTTGTGGTGAATTTGACAAATGCTTTACTCAGAGTGACAATCTTCAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGGTGAATTTGACAAATGCTTTACTCAGAGTGACAATCTTCAAA  736

seq1  GTCAGCAGAGAATTTATCCAGGAAAGAAATCTTACAAATATAGTGAAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGAGAATTTATCCAGGAAAGAAATCTTACAAATATAGTGAAAGT  786

seq1  GACAAATGCTTTACCCAACCTTCCCATCTTAGTATTCATCATACAATTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCTTTACCCAACCTTCCCATCTTAGTATTCATCATACAATTCA  836

seq1  TTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTG  886

seq1  ACAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCT  936

seq1  TACAAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAG  986

seq1  AGTTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGT  1036

seq1  GTGACAAATGCTTTACCCAAACATCCCATCTTAGTATTCATCGTAGAATT  1097
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGACAAATGCTTTACCCAACCATCCCATCTTAGTATTCATCGTAGAATT  1086

seq1  CATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTAC  1136

seq1  TGACAAAGGCAGTCTGAGAGTTCATCAGAGAAT  1180
      |||||||  || |||||||   |||||||||||
seq2  TGACAAATTCACTCTGAGAAAGCATCAGAGAAT  1169

seq1: chr4_146553756_146554520
seq2: B6Ng01-258I21.g_443_1195

seq1  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50

seq1  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100

seq1  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAAA  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATACA  150

seq1  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200

seq1  AGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTAT  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGCCATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTAT  250

seq1  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300

seq1  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350

seq1  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400

seq1  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450

seq1  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500

seq1  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550

seq1  A-GGCAAAGTA-TTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACG  598
      | || |||||| |||||||||||| |||||||||||||||||||||||||
seq2  AGGGGAAAGTATTTTCTGTTGGGG-AAGTGTGGCCTGTGTTTTATTCACG  599

seq1  TTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATT  648
      |||||||| |||| |||||||| ||| |||||||||| ||||||||||||
seq2  TTCTATTC-TGAC-ACAATTGA-GCT-CACACTAGAG-ATTAGTATGATT  644

seq1  ATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGT  698
      ||| |||||||||||||   |||||||||||||||| |||||||||||||
seq2  ATG-AAATCATGTGAAA--CTTCATGCAATGTTCAATTCTTAAATAATGT  691

seq1  CAACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGC  748
      | |||||||||||||||||||| ||||| |||||| ||||||||| ||||
seq2  C-ACTATTTTTTGCTTGAAGAACCTCTG-AAATGT-AAAATGTAG-AAGC  737

seq1  TTTTCATGACACCTTTT  765
      ||||||||  |||||||
seq2  TTTTCATG-GACCTTTT  753