BAC Information

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BAC

Clone NameB6Ng01-258L21
Chromosome4 (Build37)
Map Location 12,540,889 - 12,692,276
singlet/doubletdoublet
Overlap genenone
Upstream geneE130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258L21.bB6Ng01-258L21.g
ACCGA064102GA064103
length1,1141,102
definitionB6Ng01-258L21.b B6Ng01-258L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,540,889 - 12,542,001)(12,691,174 - 12,692,276)
sequence
gaattccaaaataggattgcattaattctaagattttgcaagagattaaa
tgttttaccaaacctgtgtgttcatttgccttcttttgctctaattttct
tagctaaggataatgaaataccttgtatttgcaagctgctgaattaagaa
tactgaactaatgagcaatgcatctgagtgatatctggcatggtgattac
tttcttcactgctatgacaaaacctccaatagaaatggcttgaaggcaga
gagctgtgtttagactcacagtgtctggaggttcactgtggcacggagaa
gcacaatgcttggtgtgctttgttcagagctctggggtctggagtttgga
ggttgcttaaattacctcacatggaatagaacaggcataaccttcagagg
cacagccctcacggcccacttctgactccacttcctaaaggagccacaga
ctccttcaaaagcaccagcagatgggagccaagtattcaaacacaagggc
atgtttcatactcaaacaataacacatgatgcatactaagtgctttatgc
atggcacacagaaaaaagaaaggcccaatagttttcagagtctccatcct
gtgaggaacacaacatgtttcatttagattatcttggcagaaatgactgg
ccagcacacatcttaactattgaaatctccacatgtttgtgaaagaatct
tactgtaaatccccattacaaaacccagaagcataaacagaaggcaaagg
gagaaatggagccaatgtgttggaacaactgggaaatagatcctgttgtg
gatcttcacaacaagtttaaaaggaaacataataggaacttgtcaaagca
cctcaagatttgttttagtgaaggttatcatttggcaaaagtcctggctg
catttaaagtttcttaaagtattagcttagaaaaatattaaagactttct
ttgcaaaatcacgttggtccaaagtttacttgtaaacaatctgcaaggat
tgtttacaaaggacaataaagtcaaataaagagaacgaagctacatgtgt
ctgaatcttttgtttttattagcataatattattggtaacaaaaataatg
agtttcagcatgcc
gaattcattaagatgagttttatcgtagaatacattttaaaaatattggg
ctttgtgaaagcaaattttttctgcaggatttaccagagctttaaatatt
ctggagtgtgccacaaatctacaagagatgagatagagtgtcttccaaat
ttatttttgatgatggaatgtttttgagactagttttcacagaacacgag
tttaggaattttttttgtaacaactgtatattttttaaaatatgtgcatc
ttatatgcagtccatctctaccctactttagaaataacaaccatatctga
aagacacagtgaaaagactcttttttcatgactcaggaaaagaaaaccat
ataaatacccaaatcgaaatactttaaaagtttttatttattgccattgc
cagaaaaaaaaagaaacaataaaattctcagagaggatagatccttttca
ttttattttatgactatgtaggataagaaaaataatttctatggataata
tatcctgagaatatacttagccctgtggaagccagaaaatagcaaaacaa
ttagcatacacctttaaaactgaatcctttctaataacctatttatttga
aacctttcaagtagataactatggctatgaattcatacaacattgctgct
tacaatacgagaattgtgttaagctgagcaatagtatctcaagaataaaa
taattatagcttgctttaaaaaaggaagccaaaataaatcaatggttgac
cattaaaatccattttcaataagtcctgctattgacatcaaatctaaaac
tgatgcttatgaaaggattgaaatagctagcctgtgtgggactccataca
ttcccactccatagtaactccaatgtggatttactttcttctattaatct
cattaacaaggctgggtgaacttaatcttgattgtcgaaattttcctgct
tgattttctagactgatctatgcttttagtcacctaccaggattcagatt
tttgattggatatctaaatgtatggccagaaaattttgactgactcttac
acattttatgaaatgattttggtgtttccagaaaatgggtaatataatga
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12540889_12542001
seq2: B6Ng01-258L21.b_49_1162

seq1  GAATTCCAAAATAGGATTGCATTAATTCTAAGATTTTGCAAGAGATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATAGGATTGCATTAATTCTAAGATTTTGCAAGAGATTAAA  50

seq1  TGTTTTACCAAACCTGTGTGTTCATTTGCCTTCTTTTGCTCTAATTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACCAAACCTGTGTGTTCATTTGCCTTCTTTTGCTCTAATTTTCT  100

seq1  TAGCTAAGGATAATGAAATACCTTGTATTTGCAAGCTGCTGAATTAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGGATAATGAAATACCTTGTATTTGCAAGCTGCTGAATTAAGAA  150

seq1  TACTGAACTAATGAGCAATGCATCTGAGTGATATCTGGCATGGTGATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACTAATGAGCAATGCATCTGAGTGATATCTGGCATGGTGATTAC  200

seq1  TTTCTTCACTGCTATGACAAAACCTCCAATAGAAATGGCTTGAAGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCACTGCTATGACAAAACCTCCAATAGAAATGGCTTGAAGGCAGA  250

seq1  GAGCTGTGTTTAGACTCACAGTGTCTGGAGGTTCACTGTGGCACGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTTTAGACTCACAGTGTCTGGAGGTTCACTGTGGCACGGAGAA  300

seq1  GCACAATGCTTGGTGTGCTTTGTTCAGAGCTCTGGGGTCTGGAGTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGCTTGGTGTGCTTTGTTCAGAGCTCTGGGGTCTGGAGTTTGGA  350

seq1  GGTTGCTTAAATTACCTCACATGGAATAGAACAGGCATAACCTTCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTAAATTACCTCACATGGAATAGAACAGGCATAACCTTCAGAGG  400

seq1  CACAGCCCTCACGGCCCACTTCTGACTCCACTTCCTAAAGGAGCCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCTCACGGCCCACTTCTGACTCCACTTCCTAAAGGAGCCACAGA  450

seq1  CTCCTTCAAAAGCACCAGCAGATGGGAGCCAAGTATTCAAACACAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAAAAGCACCAGCAGATGGGAGCCAAGTATTCAAACACAAGGGC  500

seq1  ATGTTTCATACTCAAACAATAACACATGATGCATACTAAGTGCTTTATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATACTCAAACAATAACACATGATGCATACTAAGTGCTTTATGC  550

seq1  ATGGCACACAGAAAAAAGAAAGGCCCAATAGTTTTCAGAGTCTCCATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACACAGAAAAAAGAAAGGCCCAATAGTTTTCAGAGTCTCCATCCT  600

seq1  GTGAGGAACACAACATGTTTCATTTAGATTATCTTGGCAGAAATGACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAACACAACATGTTTCATTTAGATTATCTTGGCAGAAATGACTGG  650

seq1  CCAGCACACATCTTAACTATTGAAATCTCCACATGTTTGTGAAAGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACACATCTTAACTATTGAAATCTCCACATGTTTGTGAAAGAATCT  700

seq1  TACTGTAAATCCCCATTACAAAACCCAGAAGCATAAACAGAAGGCAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAATCCCCATTACAAAACCCAGAAGCATAAACAGAAGGCAAAGG  750

seq1  GAGAAATGGAGCCAATGTGTTGGAACAACTGGGAAATAGATCCTGTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGAGCCAATGTGTTGGAACAACTGGGAAATAGATCCTGTTGTG  800

seq1  GATCTTCACAACAAGTTTAAAAGGAAACATAATAGGAACTTGTCAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCACAACAAGTTTAAAAGGAAACATAATAGGAACTTGTCAAAGCA  850

seq1  CCTCAAGATTTGTTTTAGTGAAGGTTATCATTTGGCAAAAGTCCTGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGATTTGTTTTAGTGAAGGTTATCATTTGGCAAAAGTCCTGGCTG  900

seq1  CATTTAAAGTTTCTTAAAGTATTAGCTTAGAAAAATATTAAAGACTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGTTTCTTAAAGTATTAGCTTAGAAAAATATTAAAGACTTTCT  950

seq1  TTGCAAAATCACGTTGGTCCAAAGTTTACTTTGTAAACAATCTGCAAGGA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGCAAAATCACGTTGGTCCAAAGTTTAC-TTGTAAACAATCTGCAAGGA  999

seq1  TTGTTTACAAAGGAC-ATAAAGTCAAAATAAAGAGGAACGAAGCTACATG  1049
      ||||||||||||||| |||||||| ||||||||| |||||||||||||||
seq2  TTGTTTACAAAGGACAATAAAGTC-AAATAAAGA-GAACGAAGCTACATG  1047

seq1  TGTCTGAATTCTTTTGTTTTTATTAGCAT-ATATTATT-GTA--CAAAAT  1095
      |||||||| |||||||||||||||||||| |||||||| |||   |||||
seq2  TGTCTGAA-TCTTTTGTTTTTATTAGCATAATATTATTGGTAACAAAAAT  1096

seq1  AATGAGTTTCAGCATGCC  1113
      ||||||||||||||||||
seq2  AATGAGTTTCAGCATGCC  1114

seq1: chr4_12691174_12692276
seq2: B6Ng01-258L21.g_62_1163 (reverse)

seq1  GTTCATTATATTA-CCATTTTCT-GAAACA-CAAAATCAATTTCATAAAA  47
      ||||||||||||| ||||||||| |||||| ||||||| |||||||||||
seq2  GTTCATTATATTACCCATTTTCTGGAAACACCAAAATC-ATTTCATAAAA  49

seq1  TGTGTAAAGAGTCAGTTCAAAATTTTCTGGCCATACATTTAGATATCCAA  97
      ||||| ||||||||| |||||||||||||||||||||||||||||||| |
seq2  TGTGT-AAGAGTCAG-TCAAAATTTTCTGGCCATACATTTAGATATCC-A  96

seq1  ATCAAAAATCTGAATCCTGGTAGGTGACTAAAAGCATAGATCAGTCTAGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAATCTGAATCCTGGTAGGTGACTAAAAGCATAGATCAGTCTAGA  146

seq1  AAATCAAGCAGGAAAATTTCGACAATCAAGATTAAGTTCACCCAGCCTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGCAGGAAAATTTCGACAATCAAGATTAAGTTCACCCAGCCTTG  196

seq1  TTAATGAGATTAATAGAAGAAAGTAAATCCACATTGGAGTTACTATGGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGATTAATAGAAGAAAGTAAATCCACATTGGAGTTACTATGGAG  246

seq1  TGGGAATGTATGGAGTCCCACACAGGCTAGCTATTTCAATCCTTTCATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGTATGGAGTCCCACACAGGCTAGCTATTTCAATCCTTTCATAA  296

seq1  GCATCAGTTTTAGATTTGATGTCAATAGCAGGACTTATTGAAAATGGATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTTTTAGATTTGATGTCAATAGCAGGACTTATTGAAAATGGATT  346

seq1  TTAATGGTCAACCATTGATTTATTTTGGCTTCCTTTTTTAAAGCAAGCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTCAACCATTGATTTATTTTGGCTTCCTTTTTTAAAGCAAGCTA  396

seq1  TAATTATTTTATTCTTGAGATACTATTGCTCAGCTTAACACAATTCTCGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTTATTCTTGAGATACTATTGCTCAGCTTAACACAATTCTCGT  446

seq1  ATTGTAAGCAGCAATGTTGTATGAATTCATAGCCATAGTTATCTACTTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGCAGCAATGTTGTATGAATTCATAGCCATAGTTATCTACTTGA  496

seq1  AAGGTTTCAAATAAATAGGTTATTAGAAAGGATTCAGTTTTAAAGGTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCAAATAAATAGGTTATTAGAAAGGATTCAGTTTTAAAGGTGTA  546

seq1  TGCTAATTGTTTTGCTATTTTCTGGCTTCCACAGGGCTAAGTATATTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTGTTTTGCTATTTTCTGGCTTCCACAGGGCTAAGTATATTCTC  596

seq1  AGGATATATTATCCATAGAAATTATTTTTCTTATCCTACATAGTCATAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATATTATCCATAGAAATTATTTTTCTTATCCTACATAGTCATAAA  646

seq1  ATAAAATGAAAAGGATCTATCCTCTCTGAGAATTTTATTGTTTCTTTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGAAAAGGATCTATCCTCTCTGAGAATTTTATTGTTTCTTTTTT  696

seq1  TTTCTGGCAATGGCAATAAATAAAAACTTTTAAAGTATTTCGATTTGGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCAATGGCAATAAATAAAAACTTTTAAAGTATTTCGATTTGGGT  746

seq1  ATTTATATGGTTTTCTTTTCCTGAGTCATGAAAAAAGAGTCTTTTCACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGGTTTTCTTTTCCTGAGTCATGAAAAAAGAGTCTTTTCACTG  796

seq1  TGTCTTTCAGATATGGTTGTTATTTCTAAAGTAGGGTAGAGATGGACTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCAGATATGGTTGTTATTTCTAAAGTAGGGTAGAGATGGACTGC  846

seq1  ATATAAGATGCACATATTTTAAAAAATATACAGTTGTTACAAAAAAAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATGCACATATTTTAAAAAATATACAGTTGTTACAAAAAAAATT  896

seq1  CCTAAACTCGTGTTCTGTGAAAACTAGTCTCAAAAACATTCCATCATCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTCGTGTTCTGTGAAAACTAGTCTCAAAAACATTCCATCATCAA  946

seq1  AAATAAATTTGGAAGACACTCTATCTCATCTCTTGTAGATTTGTGGCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTGGAAGACACTCTATCTCATCTCTTGTAGATTTGTGGCACA  996

seq1  CTCCAGAATATTTAAAGCTCTGGTAAATCCTGCAGAAAAAATTTGCTTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAATATTTAAAGCTCTGGTAAATCCTGCAGAAAAAATTTGCTTTC  1046

seq1  ACAAAGCCCAATATTTTTAAAATGTATTCTACGATAAAACTCATCTTAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCCAATATTTTTAAAATGTATTCTACGATAAAACTCATCTTAAT  1096

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1102