BAC Information

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BAC

Clone NameB6Ng01-258M05
Chromosome4 (Build37)
Map Location 153,739,264 - 153,899,302
singlet/doubletdoublet
Overlap genePrdm16
Upstream geneAjap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16
Downstream geneLOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258M05.bB6Ng01-258M05.g
ACCGA064118GA064119
length1,014820
definitionB6Ng01-258M05.b B6Ng01-258M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,739,264 - 153,740,279)(153,898,494 - 153,899,302)
sequence
gaattctcctgcgggtccatgggagagagacaaccagcaggtgaggatcc
gggcaagtctgacttgatgctagcctggtgtgcgggcacagggcacaggg
aaaaggccaaagagcacaggcacagggcagggcaaggctggggatgcact
agctttgagtgaaaggctgtaaatcaccttatcctggaggaccattttct
tgcccatggtctgaaatgaaaggagaatttcctgccagcaatctcttctc
tcacccacaaggtaatttaaagtaaacttccttgaagtggcttttataaa
ggtttctgaagaccagtgttcctttgagaggatccttttctgtgcttcct
aaaaagtttgccccacaaagatacagtaaagcctcactgcttagggtagc
tgaattctagcatctgtttcctaagtaacaaaacccgtaccctctccgct
ctaccggcactcctgcacccagctgcacccctcctccagtgcttcccagg
ctagggtgctctgcagacctgagcttcagacggagcatgaccaagctctg
tgtgccttgaatccactgttgtgttgctctgtctttatttttccttctct
gttccattttaatcacggttatttatttcttcagtcgtcacgaagtcctt
tttctctgctctcgtgttatggttgtggttaaggtcttgcaagtcttggt
acagagacgctggtcctggttgtctggactcagcacgtgcctggtgtcct
ctagttccgctgctgagtccacactgattccaagagctaattatactaag
ttctcgaggagctccatccggcagtgtgcacgatcaagggtctccgcaca
tcttcctagttgtcttttaaatgcgaatctttctctagagtcctgatcct
ctaactactttgacaactcgcagatgcacaaagacggggcctttgtacct
ggtctgcatgactgtttgtaagactaatggagccttcgctatcttttttc
tctctgtgtctctc
gaattctgtgatcattaacgtgggactcgtttgctacaagagagtaagca
gtgacattggagcaaagatgacagatgaaagccaaggagggcccgttccg
tttggcttccctgaggattggcccaggagtggggtgcaccagtctgtggc
aggctgcactccagagctccggtccttgggggggggggactacaaacagg
aggaatgacccagtggtcctcgggtggccagttgagaaggaggatcagag
ctatcgtttgtggtgtcacttgggatgctgtgaccatactttatttcctt
tctgggaggaaagttcttgtttcagaagacagaacgaaaaggcaggtatg
gaggcatggctggcatgaggtgactgtggaggaaaatgttctccacacgt
gagtcaggctagggtggctacataacacagtgaccagacagtgacatagg
aggggttttgactccacatcctggtagggttcactcccaccccaggtaca
ctctcctttgatggagcagagctagagctgcagcagctaagcctgcccct
ctgatgttcgcctggtactggatgttcgcctggcccatccctcgactttt
ccctctccttgctcatgtgtgtgttggatatctccattgattctaaagcc
cccctttccctgagttcttttgggaccaccagactctgactcacagtccg
tttgggaaggaaacatgtctgatgtccctgggccctggctgattggggct
gtctgagggtgtgggtgtgggtttcatatctgggacattctctgtggact
cagttccctcaaggaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_153739264_153740279
seq2: B6Ng01-258M05.b_41_1054

seq1  GAATTCATCCTGCAAGGTCACATGGGAGAGAGACAACCAGCAGGTGAGGA  50
      |||||| ||||||  |||| ||||||||||||||||||||||||||||||
seq2  GAATTC-TCCTGC-GGGTC-CATGGGAGAGAGACAACCAGCAGGTGAGGA  47

seq1  TCCAGGCAAGTCTGACTTGATGCTAGCCTGGTGTGCGGGCACAGGGCACA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGCAAGTCTGACTTGATGCTAGCCTGGTGTGCGGGCACAGGGCACA  97

seq1  GGGAAAAGGCCAAAGAGCACAGGCACAGGGCAGGGCAAGGCTGGGGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGGCCAAAGAGCACAGGCACAGGGCAGGGCAAGGCTGGGGATGC  147

seq1  AGTAGCTTTGAGTGAAAGGCTGTAAATCACCTTATCCTGGAGGACCATTT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTTGAGTGAAAGGCTGTAAATCACCTTATCCTGGAGGACCATTT  197

seq1  TCTTGCCCATGGTCTGAAATGAAAGGAGAATTTCCTGCCAGGCAATCTCT  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTTGCCCATGGTCTGAAATGAAAGGAGAATTTCCTGCCA-GCAATCTCT  246

seq1  TCTCTCACCCACAAGGTAGTTTAAAGTAAACTTCCTTGAAGTGGCTTTTA  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTCTCACCCACAAGGTAATTTAAAGTAAACTTCCTTGAAGTGGCTTTTA  296

seq1  TAAAGGTTTCTGAAGACCAGTGTTCCTTTGAGAGGATCCTTTTCTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTTCTGAAGACCAGTGTTCCTTTGAGAGGATCCTTTTCTGTGCT  346

seq1  TCCTAAAAAGTTTGCCCCACAAAGATACAGTAAAGCCTCACTGCTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAAGTTTGCCCCACAAAGATACAGTAAAGCCTCACTGCTTAGGG  396

seq1  TAGCTGAGTTCTAGCATCTGTTTCCTAAGTAACAAAACCCGTACCCTCTC  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAATTCTAGCATCTGTTTCCTAAGTAACAAAACCCGTACCCTCTC  446

seq1  CGCTCTACCGGCACTCCTGCACCCAGCTGCACCCCTCCTCCAGTGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTACCGGCACTCCTGCACCCAGCTGCACCCCTCCTCCAGTGCTTCC  496

seq1  CAGGCTAGGGTGCTCTGCAGACCTGAGCTTCAGACGGAGCATGACCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGGGTGCTCTGCAGACCTGAGCTTCAGACGGAGCATGACCAAGC  546

seq1  TCTGTGTGCCTTGAATCCAGTGTTGTGTTGCTCTGTCTTTATTTTTCCTT  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTGTGTGCCTTGAATCCACTGTTGTGTTGCTCTGTCTTTATTTTTCCTT  596

seq1  CTCTGTTCCATTTTAATCACGGTTATTTATTTCTTCAGTCGTCACGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCCATTTTAATCACGGTTATTTATTTCTTCAGTCGTCACGAAGT  646

seq1  CCTTTTTCTCTGCTCTCAGTGTTATGGTTTTGGTTAAGGTCTTGGAAGTC  700
      ||||||||||||||||| ||||||||||| |||||||||||||| |||||
seq2  CCTTTTTCTCTGCTCTC-GTGTTATGGTTGTGGTTAAGGTCTTGCAAGTC  695

seq1  TTGGTAACAGAGACGCTGGTCCTGGTTGTCTGGAACCAGCAGGTGCCTGG  750
      ||||| ||||||||||||||||||||||||||||  ||||| ||||||||
seq2  TTGGT-ACAGAGACGCTGGTCCTGGTTGTCTGGACTCAGCACGTGCCTGG  744

seq1  TGTCCAGTAGTTCCACTGCTGGGTCCAAACTGAGCCCAAGAGCTAAGTCG  800
      |||||  ||||||| |||||| ||||| |||||  ||||||||||| |  
seq2  TGTCCTCTAGTTCCGCTGCTGAGTCCACACTGATTCCAAGAGCTAATTAT  794

seq1  ACTAATTTCTCGAGGAGCTCCATCCGGCAGTGTGCAGGGTCAGGGGTCTC  850
      ||||| |||||||||||||||||||||||||||||| | ||| |||||||
seq2  ACTAAGTTCTCGAGGAGCTCCATCCGGCAGTGTGCACGATCAAGGGTCTC  844

seq1  CCCACAGCTTCCTTGTTGTCTTTTTAAATGCAAAATATTTCTCTAGAGTC  900
      | |||| |||||| |||||| ||||||||||  ||| |||||||||||||
seq2  CGCACATCTTCCTAGTTGTC-TTTTAAATGC-GAATCTTTCTCTAGAGTC  892

seq1  AAGAGCCTCAAACTACTTTAGACAGCTCGCAGAGGCCACACAAGAATGGG  950
        || |||| ||||||||| |||| |||||||| |   |||||  | |||
seq2  CTGATCCTCTAACTACTTT-GACAACTCGCAGATG---CACAAAGACGGG  938

seq1  GCCTTTGTTACGTGGTCTTCAGGAATTGTTTTTTAAGAGTAAATGGAGCC  1000
      ||||||| ||| |||||| || || |   ||| ||||| | |||||||||
seq2  GCCTTTG-TACCTGGTCTGCATGACT--GTTTGTAAGACT-AATGGAGCC  984

seq1  TT--------------TCTCTCTCTCTCTC  1016
      ||              ||||| | ||||||
seq2  TTCGCTATCTTTTTTCTCTCTGTGTCTCTC  1014

seq1: chr4_153898494_153899302
seq2: B6Ng01-258M05.g_70_889 (reverse)

seq1  CCACCTCCTTGAGGG-ACAGAGTCCACAGAG-ATGT-CCAGATATGGAAA  47
      ||||||||||||||| || |||||||||||| |||| ||||||||| || 
seq2  CCACCTCCTTGAGGGAACTGAGTCCACAGAGAATGTCCCAGATATGAAAC  50

seq1  CCACACCCACACCCTCAGACAGCCCC-ATCAGCCA-GGCCCA-GGACATC  94
      |||||||||||||||||||||||||| |||||||| |||||| |||||||
seq2  CCACACCCACACCCTCAGACAGCCCCAATCAGCCAGGGCCCAGGGACATC  100

seq1  AGACATGTTTCCTT-CCAAACGGACTGTGAGTCAGAGTCTGGTGGTCCC-  142
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  AGACATGTTTCCTTCCCAAACGGACTGTGAGTCAGAGTCTGGTGGTCCCA  150

seq1  AAAGAACTCAGGGAA--GGGGGCTTTAGAAACAATGGAGATATCCAACAC  190
      |||||||||||||||  ||||||||||||| |||||||||||||||||||
seq2  AAAGAACTCAGGGAAAGGGGGGCTTTAGAATCAATGGAGATATCCAACAC  200

seq1  ACACATGAGCAAGGAGAGGG-AAAGTCGAGGGATGGGCCAGGCGAACATC  239
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACATGAGCAAGGAGAGGGAAAAGTCGAGGGATGGGCCAGGCGAACATC  250

seq1  CAGTACCAGGCGAACATCAGAGGGGCAGGCTTAGCTGCTGCAGCTCTAGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCAGGCGAACATCAGAGGGGCAGGCTTAGCTGCTGCAGCTCTAGC  300

seq1  TCTGCTCCATCAAAGGAGAGTGTACCTGGGGTGGGAGTGAACCCTACCAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCATCAAAGGAGAGTGTACCTGGGGTGGGAGTGAACCCTACCAG  350

seq1  GATGTGGAGTCAAAACCCCTCCTATGTCACTGTCTGGTCACTGTGTTATG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAGTCAAAACCCCTCCTATGTCACTGTCTGGTCACTGTGTTATG  400

seq1  TAGCCACCCTAGCCTGACTCACGTGTGGAGAACATTTTCCTCCACAGTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACCCTAGCCTGACTCACGTGTGGAGAACATTTTCCTCCACAGTCA  450

seq1  CCTCATGCCAGCCATGCCTCCATACCTGCCTTTTCGTTCTGTCTTCTGAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCCAGCCATGCCTCCATACCTGCCTTTTCGTTCTGTCTTCTGAA  500

seq1  ACAAGAACTTTCCTCCCAGAAAGGAAATAAAGTATGGTCACAGCATCCCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTTTCCTCCCAGAAAGGAAATAAAGTATGGTCACAGCATCCCA  550

seq1  AGTGACACCACAAACGATAGCTCTGATCCTCCTTCTCAACTGGCCACCCG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACCACAAACGATAGCTCTGATCCTCCTTCTCAACTGGCCACCCG  600

seq1  AGGACCACTGGGTCATTCCTCCTGTTTGTAGTCCCCCCCCCCCAAGGACC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACTGGGTCATTCCTCCTGTTTGTAGTCCCCCCCCCCCAAGGACC  650

seq1  GGAGCTCTGGAGTGCAGCCTGCCACAGACTGGTGCACCCCACTCCTGGGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTGGAGTGCAGCCTGCCACAGACTGGTGCACCCCACTCCTGGGC  700

seq1  CAATCCTCAGGGAAGCCAAACGGAACGGGCCCTCCTTGGCTTTCATCTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCAGGGAAGCCAAACGGAACGGGCCCTCCTTGGCTTTCATCTGT  750

seq1  CATCTTTGCTCCAATGTCACTGCTTACTCTCTTGTAGCAAACGAGTCCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGCTCCAATGTCACTGCTTACTCTCTTGTAGCAAACGAGTCCCA  800

seq1  CGTTAATGATCACAGAATTC  809
      ||||||||||||||||||||
seq2  CGTTAATGATCACAGAATTC  820