BAC Information

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BAC

Clone NameB6Ng01-259A19
Chromosome17 (Build37)4 (Build37)
Map Location 63,851,774 - 63,852,92319,109,610 - 19,110,356
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEfna5, Fbxl17
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259A19.bB6Ng01-259A19.g
ACCGA064334GA064335
length1,1531,170
definitionB6Ng01-259A19.b B6Ng01-259A19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,851,774 - 63,852,923)(19,109,610 - 19,110,356)
sequence
gaattctgcctgagaagtgacatttgtgttggatagttagaaaggtgtgt
gtctgttctgactgcttgcttccttcacccacatagatcttcttgagaaa
acaaaacagaattcctcagacttaaacatttacacttaactctttcttca
ccacaccacagctccccatctagggttccacatctctaataccagccctc
aggtggctgaggcaagaacattgtcaccaattcaaggcatgcctgggcta
cagtcactctttaaaacaggagtggggagaggggacagtaaatcactatt
attgtcattgtggttttaatgacaaatgtctcctgtaaactcaaacattt
actacttggaccccagctggtgctgctgcttgggtagatctaggagcagt
aaccttgatgggagagctgtggagcaggctttgaggtttcagagctgtgt
gccattctcagattgtgttctctgcttccaacaagttcgggatgtgaact
cttagcttccagcttcaggtgtcatgccctgaactttgcaaacaaggact
ctagtcctgaaatggtgagcccagataaactattctatgagtgactttag
tcatggtgtcttcttatcaaagcaatagagaaataactaaaataatcacc
aaaactgtaagaactcattaccctaaagagtaatgccaagaaattttcaa
gaaatgaaactatcagcaagagttttggcagctgattgttaaaaatgaat
aaaccccataatcctgaatagtgagagactagactggtgcttacaggtaa
cccttggtggtctaacagcatctggtctggaattgtcagctaaatgacat
gttctcttaagcatgagcaatcaccaaacatcaatgtcatgtatgaccaa
tgtggccatagaaaaagatggaagtaagagccttccacaatcatgtctga
atgcatcaaacacaagaacctcctctagacacatagtggacagaagaggt
ggataatacattctgtattatgagggcacatttgtacctatattatagaa
aggaatctgggccatacatgcttatcaaaagctttagtcaccacctatat
gggtttggtttcaaggttaatccctgctgccagccaggtgtctatagaag
aag

gaattcaacagagaaatggcaggaagaccttacaactgtccaagggatca
ctgatgattatgataaaaagaaactagtgaaggcgtttaagaagaaattt
gcctgcaatggtactgtaattgaacatccagaatatggagaagtaattca
gctacaggatgaccagtacaagaacatatgccagttcctgatagagactg
ggctggctaaggatgatcagctgaaggttcatgggttttaagtgcttgtg
gctctctgaagcttaagtgaggatttccttgcaatgagaagaatttccct
tctgtcccttgtcacaagtttaaaaacctcacagcttgtataatgtaatc
atttggggtctgcttttaacttggactagtgtaacttcttcatgcaataa
accgaaaagagccaaaaaaaaaaaaaaaaaaaaaaagatgaattgagtag
agtaccttctgtttctattttgtggaatagtttcagaagtgttggaatta
ggtcttctttgaaggtctgatagaactctgcactaaacccatctggtcct
gggctttttttggttgggagactattgactgcttctatttctttggggga
aatgggactgtttagatcattaatctgatcctgatttaactttggtacct
ggtatcaatctaggaagttgtccactcatctaggttttctacttttgttg
agtatagccttttgtagtaggatctgatgatgttttggatttcctcaggt
tctgttatgtcttctttttcatttttgattttgttaattagatactgtcc
ctgtgccctctagttagtctggctaaggatttatctatcttattgatttt
ctcaaagaaccagctcctggttttggttgattctttgaatagttcttttt
gtttccaacttgggttgatttcagccctgagtttgattatttccttgccg
tctactcctcttggttgaaatttgcttcctttagttctagagcttctagt
gtgctgtcaagctgctagtgtatgctctcctctagtttctttttgagcac
tcaagggcctatgagtttctcttagacttgcttcattgtattccattaag
ttcggcagttgtgctttcaattgcattaacttgaaaggcttaattcgttc
tattcattccttgaccaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63851774_63852923
seq2: B6Ng01-259A19.b_48_1200

seq1  GAATTCTGCCTGAGAAGTGACATTTGTGTTGGATAGTTAGAAAGGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGAGAAGTGACATTTGTGTTGGATAGTTAGAAAGGTGTGT  50

seq1  GTCTGTTCTGACTGCTTGCTTCCTTCACCCACATAGATCTTCTTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCTGACTGCTTGCTTCCTTCACCCACATAGATCTTCTTGAGAAA  100

seq1  ACAAAACAGAATTCCTCAGACTTAAACATTTACACTTAACTCTTTCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGAATTCCTCAGACTTAAACATTTACACTTAACTCTTTCTTCA  150

seq1  CCACACCACAGCTCCCCATCTAGGGTTCCACATCTCTAATACCAGCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCACAGCTCCCCATCTAGGGTTCCACATCTCTAATACCAGCCCTC  200

seq1  AGGTGGCTGAGGCAAGAACATTGTCACCAATTCAAGGCATGCCTGGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTGAGGCAAGAACATTGTCACCAATTCAAGGCATGCCTGGGCTA  250

seq1  CAGTCACTCTTTAAAACAGGAGTGGGGAGAGGGGACAGTAAATCACTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTCTTTAAAACAGGAGTGGGGAGAGGGGACAGTAAATCACTATT  300

seq1  ATTGTCATTGTGGTTTTAATGACAAATGTCTCCTGTAAACTCAAACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATTGTGGTTTTAATGACAAATGTCTCCTGTAAACTCAAACATTT  350

seq1  ACTACTTGGACCCCAGCTGGTGCTGCTGCTTGGGTAGATCTAGGAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGGACCCCAGCTGGTGCTGCTGCTTGGGTAGATCTAGGAGCAGT  400

seq1  AACCTTGATGGGAGAGCTGTGGAGCAGGCTTTGAGGTTTCAGAGCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGATGGGAGAGCTGTGGAGCAGGCTTTGAGGTTTCAGAGCTGTGT  450

seq1  GCCATTCTCAGATTGTGTTCTCTGCTTCCAACAAGTTCGGGATGTGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTCAGATTGTGTTCTCTGCTTCCAACAAGTTCGGGATGTGAACT  500

seq1  CTTAGCTTCCAGCTTCAGGTGTCATGCCCTGAACTTTGCAAACAAGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTCCAGCTTCAGGTGTCATGCCCTGAACTTTGCAAACAAGGACT  550

seq1  CTAGTCCTGAAATGGTGAGCCCAGATAAACTATTCTATGAGTGACTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTGAAATGGTGAGCCCAGATAAACTATTCTATGAGTGACTTTAG  600

seq1  TCATGGTGTCTTCTTATCAAAGCAATAGAGAAATAACTAAAATAATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTCTTCTTATCAAAGCAATAGAGAAATAACTAAAATAATCACC  650

seq1  AAAACTGTAAGAACTCATTACCCTAAAGAGTAATGCCAAGAAATTTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTAAGAACTCATTACCCTAAAGAGTAATGCCAAGAAATTTTCAA  700

seq1  GAAATGAAACTATCAGCAAGAGTTTTGGCAGCTGATTGTTAAAAATGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAACTATCAGCAAGAGTTTTGGCAGCTGATTGTTAAAAATGAAT  750

seq1  AAACCCCATAATCCTGAATAGTGAGAGACTAGACTGGTGCTTACAGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCATAATCCTGAATAGTGAGAGACTAGACTGGTGCTTACAGGTAA  800

seq1  CCCTTGGTGGTCTAACAGCATCTGGTCTGGAATTGTCAGCTAAATGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTGGTCTAACAGCATCTGGTCTGGAATTGTCAGCTAAATGACAT  850

seq1  GTTCTCTTAAGCATGAGCAATCACCAAACATCAATGTCATGTATGACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTAAGCATGAGCAATCACCAAACATCAATGTCATGTATGACCAA  900

seq1  TGTGGCCATAGAAAAAAGATGGAAGTAAGAGCCTTCCACAATCATGTCTG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATAG-AAAAAGATGGAAGTAAGAGCCTTCCACAATCATGTCTG  949

seq1  AATGCATCAAACACAAGAACCTCCTCTAGACACATAGTGGACAGAAGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCAAACACAAGAACCTCCTCTAGACACATAGTGGACAGAAGAGG  999

seq1  TGGATAATACATTCTGTATTATGAGGGCACATTTGTACCTAATATTATAG  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGATAATACATTCTGTATTATGAGGGCACATTTGTACCT-ATATTATAG  1048

seq1  AAAGGAATCTGGG-CATACATGC-TATTAATAGCTTTTTAGTCACCAC--  1096
      ||||||||||||| ||||||||| ||| || |||  ||||||||||||  
seq2  AAAGGAATCTGGGCCATACATGCTTATCAAAAGC--TTTAGTCACCACCT  1096

seq1  -TAATGGTTT-GTTTCAA-GTTAATCCCTGCTGCCAGCCCAGGTGTCTAT  1143
       ||  ||||| ||||||| |||||||||||||||||| ||||||||||||
seq2  ATATGGGTTTGGTTTCAAGGTTAATCCCTGCTGCCAG-CCAGGTGTCTAT  1145

seq1  AG-AGAAG  1150
      || |||||
seq2  AGAAGAAG  1153


seq1: chr4_19109610_19110356
seq2: B6Ng01-259A19.g_501_1233 (reverse)

seq1  CCTTGGTCAAGGAAGAAATAAAGAAAGATATTAAAGACATTTTAGAGTTT  50
      ||||||||||||||  |||  |||| || ||| ||| | ||  ||   ||
seq2  CCTTGGTCAAGGAATGAAT--AGAACGA-ATT-AAGCCTTTCAAG---TT  43

seq1  AATAAAAATGAAGCCACAATATAGCCAAACGT-ATGGGACACAATGAAAG  99
      |||  || ||||  ||||  |  ||| ||| | |||| | |||||| |||
seq2  AATGCAATTGAAAGCACA--ACTGCCGAACTTAATGGAATACAATG-AAG  90

seq1  CAGTCCTAAGAGGAAAACTCATA--ACCCTGAGTGCCTCCAAAAAGAAAC  147
      ||   |||||||  |||||||||   || |||||||   |||||||||||
seq2  CAAGTCTAAGAG--AAACTCATAGGCCCTTGAGTGC--TCAAAAAGAAAC  136

seq1  TAGA-GAGAGCATACACTAGCAGCTTGACAACACACCTAGAAGCTCTAGA  196
      |||| ||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TAGAGGAGAGCATACACTAGCAGCTTGACAGCACA-CTAGAAGCTCTAGA  185

seq1  AGGAAAGGAAGCAAA-TTCACCCAAGAGGAGTAGACAGC-AGGAAATAAC  244
      |  |||||||||||| |||| ||||||||||||||| || ||||||||| 
seq2  ACTAAAGGAAGCAAATTTCAACCAAGAGGAGTAGACGGCAAGGAAATAAT  235

seq1  CAAACTCAGGGCTGAAATGAA-CCAAG-TGGAAACAAAAATAACTATTCA  292
      |||||||||||||||||| || ||||| |||||||||||| |||||||||
seq2  CAAACTCAGGGCTGAAATCAACCCAAGTTGGAAACAAAAAGAACTATTCA  285

seq1  AAGAATTCACC-AAACGAGGAGCTGGTTCTTTGAGAAAATCAACAAGGTA  341
      ||||||  ||| |||| |||||||||||||||||||||||||| ||| ||
seq2  AAGAATCAACCAAAACCAGGAGCTGGTTCTTTGAGAAAATCAATAAGATA  335

seq1  GATAAACCCTTAGCCAGACTAAGGAGAGGGCACAGGAAGAGTATCTTAAT  391
      |||||| |||||||||||||||  |||||||||||| | |||||| ||||
seq2  GATAAATCCTTAGCCAGACTAACTAGAGGGCACAGGGACAGTATC-TAAT  384

seq1  TAACAAAATCAGAAATGAAAAAGGAGACATAACAACAGAACCTGAGGAAA  441
      ||||||||||| ||||||||||| ||||||   |||||||||||||||||
seq2  TAACAAAATCAAAAATGAAAAAGAAGACAT---AACAGAACCTGAGGAAA  431

seq1  TCCAAAACATCATCATATTCTATTACAAAAGGCTATCCTCAACAAAACTG  491
      ||||||||||||||| || ||| ||||||||||||| |||||||||| | 
seq2  TCCAAAACATCATCAGATCCTACTACAAAAGGCTATACTCAACAAAAGTA  481

seq1  GAAAACCTAGATGAAATGAACAACTTCCTGGACAGATACCAGGAACCAAA  541
      ||||||||||||| | || |||||||||| ||  ||||||||| ||||||
seq2  GAAAACCTAGATG-AGTGGACAACTTCCTAGATTGATACCAGGTACCAAA  530

seq1  GTTAAATCAGGATCAGATTAACAATCTTAACAGTCTGATTTCCCCTAAAG  591
      |||||||||||||||||||||  |||| |||||||  |||||||| ||||
seq2  GTTAAATCAGGATCAGATTAATGATCTAAACAGTCCCATTTCCCCCAAAG  580

seq1  AAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCA  641
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  AAATAGAAGCAGTC---AATAGTCTCCCAACCAAAAAAAGCCCAGGACCA  627

seq1  GATGGGTTTAGTGCAGAGTTCTGTCAGACCTTCAAAGAAGACCTAATTCC  691
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGACCTAATTCC  677

seq1  AACTGTCCTCAAACTATTCCACAAAATATAAACAGAAGGTAATCTACCCA  741
      |||  | || |||||||||||||||||| |||||||||||| ||||| ||
seq2  AACACTTCTGAAACTATTCCACAAAATAGAAACAGAAGGTACTCTACTCA  727

seq1  ATTCAT  747
      ||||||
seq2  ATTCAT  733


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