BAC Information

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BAC

Clone NameB6Ng01-259H05
Chromosome4 (Build37)
Map Location 115,898,985 - 116,078,800
singlet/doubletdoublet
Overlap genePik3r3, Mast2
Upstream geneLOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Downstream geneLOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259H05.bB6Ng01-259H05.g
ACCGA064628GA064629
length1,1121,078
definitionB6Ng01-259H05.b B6Ng01-259H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,898,985 - 115,900,096)(116,077,716 - 116,078,800)
sequence
gaattcactctgtagaccaggctggtgtcttaactcagagaacccctggg
atgaaagtcatataccaccattgtctggctagatttttagtctagaatta
tgtctgaaggggctagaaaatagaaagatggctcactagtcaagaactat
attatagagagtcgttgtctaaaagaaaaaagaaaagaatttaattgaat
ccaaataggagcttaatatctttttggaaaattaattttatctatctatc
tatctatctatctatctatctatctatctatctatctatctatttgtgtg
tggagcaggagtgttatggtgtgcctgtggcaatcagatgacaagttaca
ggagttggttctttttctcaccaagtgagtcctggagatgaaactcaggt
tgtcagggttggcaacaagcacctttattcactgagctgtctttgtggcc
taggtttcatattttaatgttcctgtattttctggcagctgtagagatac
tgtttatatgaaatgtaaaactaccttcgaaatgttacgattggggtaga
aatataattaaattgttagagtgcttgtctagtatatatgatactctggg
tttgatccccaacacaaggtaaattgggtgtggtgatacaagtctgtaat
tcttcatagaggctgaagaatcaagatcacagccacacagtgagttgaga
ctagcctgggatatgagatctgtttacaaaaaaaaaagagagagagagaa
aaagtactatcaagagttagggttgtgggctaggttggcaagatggctca
ttaggtaaaagttcttgctaacagtatccagcctcataacctgcatgtga
ttctccagaatccacatgggaggaggagaaaacttccctaagttgtctct
gtcttctacctgggcactctgacacgtgtgcacccacatatacatgtggg
gacacacacattaaataagtaagtaagtaagtaagtaaataaataaataa
atgtgggaaaaaagcatagcctgggtgtgctgctgcatcactcccagcat
ttgggagacagaagggggagtgttcttggttccaagatcagcatgaatta
catagggaattc
gaattcatccgtgctcagaactcacagcacgtgtactttcatccttccaa
ggacataaaagagctgagagaccaaccttagcaatggtccaggcttcagg
gtggagggtggcggaagaggctttgggactgtccaagaaggggagatctg
cgtagctagcgataaagaaacaaaagagtctgtgacagtatcgaaagaat
ctgacatttgctttgtctgtacaaaggatgaaaggaattttgccgactta
accaaaacaataactggttttgtatcagtttgagcccgaaaagaggcagc
agaataatatgttttttttgttgttgtttttatatttttgaagcatattt
accttcagaaatggacgtggaatgcttttatttttggaaaggaaaacgtg
acaccgattttacgagcttagtagctgtaggtggagactcttgttttgtt
tgccaaacctttttaataagcagtgaagtctggatagcaaagattgcagt
tgcttttcctgggacctttgttcttctcttggtacttaagataatttcag
acaaaggaggctatgtatggaaaagaaaagcaaatatcaagtattttctc
tgttcctgctttgattctaatgagagttttctatattttagtattaggca
ataattgtgtcctaggttagctgtttgctgggttactgggcacagcctgc
tgttctgaatggactgtttacctctttattcagcagtaaataggtgctag
tagttggtgtctggggagtggcttttttttgtctgatatttgctatggat
gattcgagtattctgagaaggagaggtttacaggtgagtaaaacaaagcc
tctttttaaatactgttagcaccttttggagatgtatcagattgttgcaa
tttcatttagtgcatggggggagggggtgtcactaagtattttattctgt
catatatacttatgactagagacttttgttagacctgctaattgtttctt
ttcatttctttgttttacttgaaatggggtcttgggtatattactaagtt
gattctcaactccttgggctcagggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115898985_115900096
seq2: B6Ng01-259H05.b_44_1155

seq1  GAATTCACTCTGTAGACCAGGCTGGTGTCTTAACTCAGAGAACCCCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGTGTCTTAACTCAGAGAACCCCTGGG  50

seq1  ATGAAAGTCATATACCACCATTGTCTGGCTAGATTTTTAGTCTAGAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTCATATACCACCATTGTCTGGCTAGATTTTTAGTCTAGAATTA  100

seq1  TGTCTGAAGGGGCTAGAAAATAGAAAGATGGCTCACTAGTCAAGAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGGGGCTAGAAAATAGAAAGATGGCTCACTAGTCAAGAACTAT  150

seq1  ATTATAGAGAGTCGTTGTCTAAAAGAAAAAAGAAAAGAATTTAATTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAGAGTCGTTGTCTAAAAGAAAAAAGAAAAGAATTTAATTGAAT  200

seq1  CCAAATAGGAGCTTAATATCTTTTTGGAAAATTAATTTTATCTATCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGGAGCTTAATATCTTTTTGGAAAATTAATTTTATCTATCTATC  250

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTGTGTG  300

seq1  TGGAGCAGGAGTGTTATGGTGTGCCTGTGGCAATCAGATGACAAGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGGAGTGTTATGGTGTGCCTGTGGCAATCAGATGACAAGTTACA  350

seq1  GGAGTTGGTTCTTTTTCTCACCAAGTGAGTCCTGGAGATGAAACTCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGTTCTTTTTCTCACCAAGTGAGTCCTGGAGATGAAACTCAGGT  400

seq1  TGTCAGGGTTGGCAACAAGCACCTTTATTCACTGAGCTGTCTTTGTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGTTGGCAACAAGCACCTTTATTCACTGAGCTGTCTTTGTGGCC  450

seq1  TAGGTTTCATATTTTAATGTTCCTGTATTTTCTGGCAGCTGTAGAGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCATATTTTAATGTTCCTGTATTTTCTGGCAGCTGTAGAGATAC  500

seq1  TGTTTATATGAAATGTAAAACTACCTTCGAAATGTTACGATTGGGGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATGAAATGTAAAACTACCTTCGAAATGTTACGATTGGGGTAGA  550

seq1  AATATAATTAAATTGTTAGAGTGCTTGTCTAGTATATATGATACTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTAAATTGTTAGAGTGCTTGTCTAGTATATATGATACTCTGGG  600

seq1  TTTGATCCCCAACACAAGGTAAATTGGGTGTGGTGATACAAGTCTGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCCCAACACAAGGTAAATTGGGTGTGGTGATACAAGTCTGTAAT  650

seq1  TCTTCATAGAGGCTGAAGAATCAAGATCACAGCCACACAGTGAGTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAGAGGCTGAAGAATCAAGATCACAGCCACACAGTGAGTTGAGA  700

seq1  CTAGCCTGGGATATGAGATCTGTTTACAAAAAAAAAAGAGAGAGAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGGGATATGAGATCTGTTTACAAAAAAAAAAGAGAGAGAGAGAA  750

seq1  AAAGTACTATCAAGAGTTAGGGTTGTGGGCTAGGTTGGCAAGATGGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTATCAAGAGTTAGGGTTGTGGGCTAGGTTGGCAAGATGGCTCA  800

seq1  TTAGGTAAAAGTTCTTGCTAACAGTATCCAGCCTCATAACCTGCATGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAAAAGTTCTTGCTAACAGTATCCAGCCTCATAACCTGCATGTGA  850

seq1  TTCTCCAGAATCCACATGGGAGGAGGAGAAAACTTCCCTAAGTTGTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGAATCCACATGGGAGGAGGAGAAAACTTCCCTAAGTTGTCTCT  900

seq1  GTCTTCTACCTGGGCACTCTGACACGTGTGCACCCACATATACATGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTACCTGGGCACTCTGACACGTGTGCACCCACATATACATGTGGG  950

seq1  GACACACACATTAAATAAGTAAGTAAGTAAGTAAGTAAATAAATAAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACATTAAATAAGTAAGTAAGTAAGTAAGTAAATAAATAAATAA  1000

seq1  ATGTGGGAAAAAAGCATTAAGCTGGGTGTGCTGCTGCATCACTCCCAGCA  1050
      |||||||||||||||| ||  |||||||||||||||||||||||||||||
seq2  ATGTGGGAAAAAAGCA-TAGCCTGGGTGTGCTGCTGCATCACTCCCAGCA  1049

seq1  TTTGGGAGACAGAAGGGGGAGTG-TCTGTGTTCCAAGATCAGCATGATTT  1099
      ||||||||||||||||||||||| |||  |||||||||||||||||| ||
seq2  TTTGGGAGACAGAAGGGGGAGTGTTCTTGGTTCCAAGATCAGCATGAATT  1099

seq1  ACATAAGGAATTC  1112
      ||||| |||||||
seq2  ACATAGGGAATTC  1112

seq1: chr4_116077716_116078800
seq2: B6Ng01-259H05.g_66_1143 (reverse)

seq1  GGTCACCTGAGCCC-AGGAGTTGGAGATCAACCTGAGTAATATACCCAAG  49
      |||| ||||||||| ||||||||   ||||| || |||||||||||||||
seq2  GGTC-CCTGAGCCCAAGGAGTTGAGAATCAA-CTTAGTAATATACCCAAG  48

seq1  ACCCCATTTCAAGATAAAACAAAAGAAATGAAAAGAAAACAAATTAGCAA  99
      ||||||||||||| |||||| |||||||||||||||||   ||||||| |
seq2  ACCCCATTTCAAG-TAAAAC-AAAGAAATGAAAAGAAA--CAATTAGC-A  93

seq1  GGTCTTAACAAAAGTTCTCTAGTCATAAGTATATATGACAGAATAAAATA  149
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTC-TAACAAAAG-TCTCTAGTCATAAGTATATATGACAGAATAAAATA  141

seq1  CTTAGTGACACCCCCT-CCCCCATGCACTAAATGAAATTGCAACAATCTG  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTAGTGACACCCCCTCCCCCCATGCACTAAATGAAATTGCAACAATCTG  191

seq1  ATACATCTCCAAAAGGTGCTAACAGTATTTAAAAAGAGGCTTTGTTTTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTCCAAAAGGTGCTAACAGTATTTAAAAAGAGGCTTTGTTTTAC  241

seq1  TCACCTGTAAACCTCTCCTTCTCAGAATACTCGAATCATCCATAGCAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTAAACCTCTCCTTCTCAGAATACTCGAATCATCCATAGCAAAT  291

seq1  ATCAGACAAAAAAAAGCCACTCCCCAGACACCAACTACTAGCACCTATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAAAAAAAAGCCACTCCCCAGACACCAACTACTAGCACCTATTT  341

seq1  ACTGCTGAATAAAGAGGTAAACAGTCCATTCAGAACAGCAGGCTGTGCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAATAAAGAGGTAAACAGTCCATTCAGAACAGCAGGCTGTGCCC  391

seq1  AGTAACCCAGCAAACAGCTAACCTAGGACACAATTATTGCCTAATACTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCCAGCAAACAGCTAACCTAGGACACAATTATTGCCTAATACTAA  441

seq1  AATATAGAAAACTCTCATTAGAATCAAAGCAGGAACAGAGAAAATACTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAAAACTCTCATTAGAATCAAAGCAGGAACAGAGAAAATACTTG  491

seq1  ATATTTGCTTTTCTTTTCCATACATAGCCTCCTTTGTCTGAAATTATCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTTTTCTTTTCCATACATAGCCTCCTTTGTCTGAAATTATCTT  541

seq1  AAGTACCAAGAGAAGAACAAAGGTCCCAGGAAAAGCAACTGCAATCTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCAAGAGAAGAACAAAGGTCCCAGGAAAAGCAACTGCAATCTTTG  591

seq1  CTATCCAGACTTCACTGCTTATTAAAAAGGTTTGGCAAACAAAACAAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAGACTTCACTGCTTATTAAAAAGGTTTGGCAAACAAAACAAGAG  641

seq1  TCTCCACCTACAGCTACTAAGCTCGTAAAATCGGTGTCACGTTTTCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCTACAGCTACTAAGCTCGTAAAATCGGTGTCACGTTTTCCTTT  691

seq1  CCAAAAATAAAAGCATTCCACGTCCATTTCTGAAGGTAAATATGCTTCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAAAAGCATTCCACGTCCATTTCTGAAGGTAAATATGCTTCAA  741

seq1  AAATATAAAAACAACAACAAAAAAAACATATTATTCTGCTGCCTCTTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAAACAACAACAAAAAAAACATATTATTCTGCTGCCTCTTTTC  791

seq1  GGGCTCAAACTGATACAAAACCAGTTATTGTTTTGGTTAAGTCGGCAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAAACTGATACAAAACCAGTTATTGTTTTGGTTAAGTCGGCAAAA  841

seq1  TTCCTTTCATCCTTTGTACAGACAAAGCAAATGTCAGATTCTTTCGATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCATCCTTTGTACAGACAAAGCAAATGTCAGATTCTTTCGATAC  891

seq1  TGTCACAGACTCTTTTGTTTCTTTATCGCTAGCTACGCAGATCTCCCCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGACTCTTTTGTTTCTTTATCGCTAGCTACGCAGATCTCCCCTT  941

seq1  CTTGGACAGTCCCAAAGCCTCTTCCGCCACCCTCCACCCTGAAGCCTGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACAGTCCCAAAGCCTCTTCCGCCACCCTCCACCCTGAAGCCTGGA  991

seq1  CCATTGCTAAGGTTGGTCTCTCAGCTCTTTTATGTCCTTGGAAGGATGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTAAGGTTGGTCTCTCAGCTCTTTTATGTCCTTGGAAGGATGAA  1041

seq1  AGTACACGTGCTGTGAGTTCTGAGCACGGATGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  AGTACACGTGCTGTGAGTTCTGAGCACGGATGAATTC  1078