BAC Information

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BAC

Clone NameB6Ng01-259I03
Chromosome4 (Build37)
Map Location 92,455,730 - 92,549,007
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259I03.bB6Ng01-259I03.g
ACCGA064672GA064673
length1,209735
definitionB6Ng01-259I03.b B6Ng01-259I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,455,730 - 92,456,920)(92,548,277 - 92,549,007)
sequence
gaattctctgtatataattcagaaaaataatcattattttctctgtactt
ttaaattattttattgattacttgggaatactttgtattactccttatcc
aaaatccttcgagatctatccctacttccatatttactacagtttgtgtc
cttcatattttttaaatccatggaatctaatttttatagtctatctattc
ttgtgtttgtcattggctcaacattgcgtggaactatggtcacaagaaat
tcaacaccttttctgatctctcaagacacctatgtgcacctgtatgagca
tatagagacacatcaaaataaaagcacacaaagataaaattatttgcatt
tatttatgtaaacatcatgtgtatgcccggtgtttgcagaagctagaagg
aagtgttggatgcagtggaattggaatgacagatggttgtgagttgtaac
gtggttgttaggaatccaactcaactccttcattcatcctgtatccttaa
ctgctgagccctctttccagctacagtgtaaaattatttttaaatactac
tacatttgactaaaaattttcaaatatgctattgtcgttttgtgagtttc
attccagttacttttcagctgttgaaatattatgttctccatctcgttag
tgacatttactatttgttaaaatttgtcatcatgattttctacaattaaa
acattgtcttagtttatttatgtttttaattatgggataaaattaatata
ttatagtttacatttttactaagtccaaaattaaggttatgctttatagg
tctcattgccttagtttattttattttgttttccttgctgcagatatctg
tatctataaccatggatagatagatagatagatagatagatagatagata
gatagatagataggaatatttcacatatgggaagttttcttagtgataat
ctcaataaagcttaggaaaattatacttgtttcaacatttgaaagaaaaa
tattattgtcaaagtaaggttccctatcttggaatttatctcctactctc
ttttggaaacatgggcaccattaaatttctggttctcccacatgattcaa
atatatgcatagaaactagtttctctctaagtctaaaggaaccttaaatt
acccgtcatgaattgttgaacctaagctgttcaatgagtccaaagaaagg
taatctttg

gaattccaccccttatagtgggcctacaataggcttctcactttatgcta
aggtcaacaccttacagtggtcttttcagcctatgttaaagcccataatc
aatattagagaaatctggacatgggacaaaagctgtgctgatccaagata
gtacttgtacaaaggaactaataacacatcttctggcactgaataacaaa
cagtacaaaattggaaactgataggtcaactcttcaatgatatagtgctc
ccttaggaaagatatctgatttttctaaattcagaacaacaatttcaaca
aagtaagtgcaaatatgcacaaattaagccaacatgaaaaattaagataa
gatattttcttcaaaaattgctaataatatagcagtgatttcaactgata
atgatttgaaagagtttaaacatataattgaaaagaataattaaaactat
actatgtttatactaagcagagaaggcatggcagcattccaaaagaagaa
caaaaacatgaatgaaataaggaggtagacagaacatatggaaataaaat
ggggagagagagagagagagagagagagagagagagagagagagagagag
agagagagagaagaaactgaaatgaggatggatatgataagccccataat
ttaatttgaaagatctgttgaaaaacctcctatcacttgataaagatggt
gtgttttttttttttaattcttgtgaacatagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_92455730_92456920
seq2: B6Ng01-259I03.b_42_1250

seq1  GAATTCTCTGTATATAATTCAGAAAAATAATCATTATTTTCTCTGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTATATAATTCAGAAAAATAATCATTATTTTCTCTGTACTT  50

seq1  TTAAATTATTTTATTGATTACTTGGGAATACTTTGTATTACTCCTTATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTTTATTGATTACTTGGGAATACTTTGTATTACTCCTTATCC  100

seq1  AAAATCCTTCGAGATCTATCCCTACTTCCATATTTACTACAGTTTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTTCGAGATCTATCCCTACTTCCATATTTACTACAGTTTGTGTC  150

seq1  CTTCATATTTTTTAAATCCATGGAATCTAATTTTTATAGTCTATCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTTTTTAAATCCATGGAATCTAATTTTTATAGTCTATCTATTC  200

seq1  TTGTGTTTGTCATTGGCTCAACATTGCGTGGAACTATGGTCACAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTGTCATTGGCTCAACATTGCGTGGAACTATGGTCACAAGAAAT  250

seq1  TCAACACCTTTTCTGATCTCTCAAGACACCTATGTGCACCTGTATGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACCTTTTCTGATCTCTCAAGACACCTATGTGCACCTGTATGAGCA  300

seq1  TATAGAGACACATCAAAATAAAAGCACACAAAGATAAAATTATTTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACACATCAAAATAAAAGCACACAAAGATAAAATTATTTGCATT  350

seq1  TATTTATGTAAACATCATGTGTATGCCCGGTGTTTGCAGAAGCTAGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTAAACATCATGTGTATGCCCGGTGTTTGCAGAAGCTAGAAGG  400

seq1  AAGTGTTGGATGCAGTGGAATTGGAATGACAGATGGTTGTGAGTTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGGATGCAGTGGAATTGGAATGACAGATGGTTGTGAGTTGTAAC  450

seq1  GTGGTTGTTAGGAATCCAACTCAACTCCTTCATTCATCCTGTATCCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTTAGGAATCCAACTCAACTCCTTCATTCATCCTGTATCCTTAA  500

seq1  CTGCTGAGCCCTCTTTCCAGCTACAGTGTAAAATTATTTTTAAATACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCCCTCTTTCCAGCTACAGTGTAAAATTATTTTTAAATACTAC  550

seq1  TACATTTGACTAAAAATTTTCAAATATGCTATTGTCGTTTTGTGAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGACTAAAAATTTTCAAATATGCTATTGTCGTTTTGTGAGTTTC  600

seq1  ATTCCAGTTACTTTTCAGCTGTTGAAATATTATGTTCTCCATCTCGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTTACTTTTCAGCTGTTGAAATATTATGTTCTCCATCTCGTTAG  650

seq1  TGACATTTACTATTTGTTAAAATTTGTCATCATGATTTTCTACAATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTACTATTTGTTAAAATTTGTCATCATGATTTTCTACAATTAAA  700

seq1  ACATTGTCTTAGTTTATTTATGTTTTTAATTATGGGATAAAATTAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCTTAGTTTATTTATGTTTTTAATTATGGGATAAAATTAATATA  750

seq1  TTATAGTTTACATTTTTACTAAGTCCAAAATTAAGGTTATGCTTTATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTACATTTTTACTAAGTCCAAAATTAAGGTTATGCTTTATAGG  800

seq1  TCTCATTGCCTTAGTTTATTTTATTTTGTTTTCCTTGCTGCAGATATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGCCTTAGTTTATTTTATTTTGTTTTCCTTGCTGCAGATATCTG  850

seq1  TATCTATAACCATGGATAGATAGATAGATAGATAGATAGATAGATAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAACCATGGATAGATAGATAGATAGATAGATAGATAGATAGATA  900

seq1  GATAGATAGATAGGAATATTTCACATAT-GGAAGTTTTCTTAGTGAT-AT  948
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GATAGATAGATAGGAATATTTCACATATGGGAAGTTTTCTTAGTGATAAT  950

seq1  CTCAATAAAGC-TAGGAAAA-TATACTTGTTTCACAATTTGAAAG-AAAA  995
      ||||||||||| |||||||| |||||||||||||  ||||||||| ||||
seq2  CTCAATAAAGCTTAGGAAAATTATACTTGTTTCAACATTTGAAAGAAAAA  1000

seq1  TA-TATTGTCAAAAGTAAGGTT-CCTATCTTGG-ATTTATCTTCTACTC-  1041
      || ||||||| ||||||||||| |||||||||| |||||||| |||||| 
seq2  TATTATTGTC-AAAGTAAGGTTCCCTATCTTGGAATTTATCTCCTACTCT  1049

seq1  CTTT--GGAACATGGGACACCAAT-TATGTCTG--TCT-CCACATGATCC  1085
      ||||  | |||||||| ||||| |  || ||||  ||| ||||||||| |
seq2  CTTTTGGAAACATGGG-CACCATTAAATTTCTGGTTCTCCCACATGATTC  1098

seq1  --ATATATGCATAGAAACTTGTT--TCTCTAAGTCT-AAGGACCTTAAAA  1130
        ||||||||||||||||| |||  ||||||||||| ||||| | | |||
seq2  AAATATATGCATAGAAACTAGTTTCTCTCTAAGTCTAAAGGAACCTTAAA  1148

seq1  TTACTGTCCATGAATTG-TGA--CTAAAAATGCTGTTCATTGAG-CCAAA  1176
      ||||    ||||||||| |||  ||||    |||||||| |||| |||||
seq2  TTACCCGTCATGAATTGTTGAACCTAA----GCTGTTCAATGAGTCCAAA  1194

seq1  GAGAAGTGATCTTTG  1191
      || | || |||||||
seq2  GAAAGGTAATCTTTG  1209


seq1: chr4_92548277_92549007
seq2: B6Ng01-259I03.g_68_802 (reverse)

seq1  ATGCTCTGTTCACAAGA--TCTAAGAAGTGAACACACCATC-TTGTCAAG  47
      ||||| |||||||||||  |  || ||   ||||||||||| || |||||
seq2  ATGCTATGTTCACAAGAATTAAAAAAAAAAAACACACCATCTTTATCAAG  50

seq1  TGATAGGA-GCTTTTCAACAGATCTTTCAATTTAACTTATGGGGCTTATC  96
      |||||||| | ||||||||||||||||||| |||| ||||||||||||||
seq2  TGATAGGAGGTTTTTCAACAGATCTTTCAAATTAAATTATGGGGCTTATC  100

seq1  ATATCCATCCTCATTTCAGTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATCCTCATTTCAGTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTC  150

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCATTTTATTTCCATAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCATTTTATTTCCATAT  200

seq1  GTTCTGTCTACCTCCTTATTTCATTCATGTTTTTGTTCTTCTTTTGGAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTCTACCTCCTTATTTCATTCATGTTTTTGTTCTTCTTTTGGAAT  250

seq1  GCTGCCATGCCTTCTCTGCTTAGTATAAACATAGTATAGTTTTAATTATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGCCTTCTCTGCTTAGTATAAACATAGTATAGTTTTAATTATT  300

seq1  CTTTTCAATTATATGTTTAAACTCTTTCAAATCATTATCAGTTGAAATCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATTATATGTTTAAACTCTTTCAAATCATTATCAGTTGAAATCA  350

seq1  CTGCTATATTATTAGCAATTTTTGAAGAAAATATCTTATCTTAATTTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATATTATTAGCAATTTTTGAAGAAAATATCTTATCTTAATTTTTC  400

seq1  ATGTTGGCTTAATTTGTGCATATTTGCACTTACTTTGTTGAAATTGTTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGCTTAATTTGTGCATATTTGCACTTACTTTGTTGAAATTGTTGT  450

seq1  TCTGAATTTAGAAAAATCAGATATCTTTCCTAAGGGAGCACTATATCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTAGAAAAATCAGATATCTTTCCTAAGGGAGCACTATATCATT  500

seq1  GAAGAGTTGACCTATCAGTTTCCAATTTTGTACTGTTTGTTATTCAGTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTGACCTATCAGTTTCCAATTTTGTACTGTTTGTTATTCAGTGC  550

seq1  CAGAAGATGTGTTATTAGTTCCTTTGTACAAGTACTATCTTGGATCAGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGTGTTATTAGTTCCTTTGTACAAGTACTATCTTGGATCAGCA  600

seq1  CAGCTTTTGTCCCATGTCCAGATTTCTCTAATATTGATTATGGGCTTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTGTCCCATGTCCAGATTTCTCTAATATTGATTATGGGCTTTAA  650

seq1  CATAGGCTGAAAAGACCACTGTAAGGTGTTGACCTTAGCATAAAGTGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCTGAAAAGACCACTGTAAGGTGTTGACCTTAGCATAAAGTGAGA  700

seq1  AGCCTATTGTAGGCCCACTATAAGGGGTGGAATTC  731
      |||||||||||||||||||||||||||||||||||
seq2  AGCCTATTGTAGGCCCACTATAAGGGGTGGAATTC  735


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