BAC Information

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BAC

Clone NameB6Ng01-260K05
Chromosome4 (Build37)
Map Location 36,262,901 - 36,264,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260K05.bB6Ng01-260K05.g
ACCGA065510GA065511
length1,203946
definitionB6Ng01-260K05.b B6Ng01-260K05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagacatttttagtgttttgtaatgtctaattttattcacaag
gcataagtgaagagatctggtacttgacaatccatagctgtctttttaaa
ggtaaataaggtcttgtaaatactggaggactaacaaacaatccttgaac
ttgctctggcttcagatcttcaccgttctatgctcagataaaagggagtt
tatagaactttcttataggtaaaatcattttaaatagacattggttggac
tgatcagttttaagatgggtactcagggctccctatctcttctgaggata
ctttgataactttgaagtcctgtatgccccatctgtcttttcacacactt
tcatcacactgtaatttggtaaatgggttgttggagcctgacatctctcc
gatgtgcctgctccttttctttcaaagactatacctagtacactaaggaa
aagacctctttccttacatccacctctgctgcctgcttctccacaagact
tttcccctcaccagggtgctctgtggctcattcttcaatgtccctcttcc
actgctttcctcacctagcagcatatcaccaccatcctacatggtgaagc
tttctgattccagtagggtgttttattgcccacaggagattccggtctga
tagtgatatgatggaattcttgaggtacaaaaatgagaatcccaaagctt
atctctgctctcgtgactcacaatctattgggtacataagtaagaatcca
tggttttgtttttaaacaaatgccttaaaaaattctgaagcacatttaga
aaaacaactttgtgtgtggagttaatgactgaagaagaaacgggctcact
gaataaattgtgattaaaaaccttagtatgatgcttaggcaccattgcct
gtaggattcctagttattcataagtaacataatctgcattatttctagtg
ggtgttcattttcttttactgtttgagaatggccttaggtaaggcactat
acctacagtaacccacaatggttcactatgttgttccacttcactcctgc
cagcagcttatccttgtcacctggggagctttcttattgaccttgacttt
cacactgggtgaggaatagggcagaatgtaagacccttccacccagaaaa
aaacaacttttaccttccacaggcaaaccagccccccctgcatcccctct
gta

gaattcaatgaaaatgaaggtacaagacactcaaacttatgggacacaat
aaaatttcatagtacaaagtgctttaataaaaaagaggagaaatctcaaa
ctttcaatgcacatatagaagctctagaacaaaatgaagcaaagagaccc
aagaggagtagacagcacagaggaaatactcaaactcagaactgaaatca
atcaattaggaacaaagagaacaatacaaagaatcaattaatccaagagt
tgattctttgagacaatcaacaagatagataagcccttagccaaaccaag
ttaaaggcaatgagaaagtacccaaattaacaaaatcagcaatgaaaaag
agaatataacaatagacactgaggaagtctttttttttccatttttaatt
aggtatttagctcatttacatttccaatgctataccaaaagtcccccata
ctcacccacccccactcccctacccacacactccccctttttggccctgg
cgttcccctgtactggggcatataaagtttgcgtgtccaatgggcctctc
tttattgaaaggacccagatgtagctgtctcttgtgagactatgctgggg
cctagcaaacacagaagtggatgctcacagtcagctaatggatggatcac
agggctcccaatggaggagctagagaaagtagccaaggagctaaagggat
ctgcaaccctataggtggaacaacattatgaactaaccagtaccgcggag
ctcttgactctagctgcatatgtatcaaaagatggcctagtcggccatca
ctgaggaagtcttaaaaaaaaaaaaaaaaaaaaaaaaaaatctttagaaa
actttaggtcttttcttcaaaagcctgtaattgacaaaattgggaaaatc
taaatgaaatggatgattttctttaatagatttcacgtaccaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36262901_36264100
seq2: B6Ng01-260K05.b_40_1242 (reverse)

seq1  TACAGAGGGGGAATTTTGCA-GGGGGGCTGTTTTGCCTGTGGAA-GTTAA  48
      ||||||||||      |||| ||||||||| ||||||||||||| || ||
seq2  TACAGAGGGG-----ATGCAGGGGGGGCTGGTTTGCCTGTGGAAGGTAAA  45

seq1  TGTTGTTTTTTTTCTGGGTGGAAGTGTC-TACA-TCTGCCCTATTCCTTC  96
       |||| |||||||||||||||||| ||| |||| ||||||||||||| ||
seq2  AGTTG-TTTTTTTCTGGGTGGAAGGGTCTTACATTCTGCCCTATTCC-TC  93

seq1  ACCAGGTGTG-AAGTCAAGGTC-ATAAGAAAGCT-CCCAGGTGAC-AGGA  142
      |||  ||||| ||||||||||| ||||||||||| |||||||||| ||||
seq2  ACCCAGTGTGAAAGTCAAGGTCAATAAGAAAGCTCCCCAGGTGACAAGGA  143

seq1  T-AGCTGGCTGGCAGGAGTGAAGT-GAAC-ACATAGTG-ACCATTGTGGG  188
      | |||| ||||||||||||||||| |||| |||||||| |||||||||||
seq2  TAAGCT-GCTGGCAGGAGTGAAGTGGAACAACATAGTGAACCATTGTGGG  192

seq1  TTACTGTAGGTATAGTGCCTTACCTAAGGCCATTCTCAAACAGTTAAAAG  238
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTACTGTAGGTATAGTGCCTTACCTAAGGCCATTCTCAAACAG-TAAAAG  241

seq1  AAAATGAACACCCACTAGAAATAATGCAGATTATGTTACTTATGAATAAC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACACCCACTAGAAATAATGCAGATTATGTTACTTATGAATAAC  291

seq1  TAGGAATCCTACAGGCAATGGTGCCTAAGCATCATACTAAGGTTTTTAAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATCCTACAGGCAATGGTGCCTAAGCATCATACTAAGGTTTTTAAT  341

seq1  CACAATTTATTCAGTGAGCCCGTTTCTTCTTCAGTCATTAACTCCACACA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTATTCAGTGAGCCCGTTTCTTCTTCAGTCATTAACTCCACACA  391

seq1  CAAAGTTGTTTTTCTAAATGTGCTTCAGAATTTTTTAAGGCATTTGTTTA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGTTTTTCTAAATGTGCTTCAGAATTTTTTAAGGCATTTGTTTA  441

seq1  AAAACAAAACCATGGATTCTTACTTATGTACCCAATAGATTGTGAGTCAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACCATGGATTCTTACTTATGTACCCAATAGATTGTGAGTCAC  491

seq1  GAGAGCAGAGATAAGCTTTGGGATTCTCATTTTTGTACCTCAAGAATTCC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGAGATAAGCTTTGGGATTCTCATTTTTGTACCTCAAGAATTCC  541

seq1  ATCATATCACTATCAGACCGGAATCTCCTGTGGGCAATAAAACACCCTAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCACTATCAGACCGGAATCTCCTGTGGGCAATAAAACACCCTAC  591

seq1  TGGAATCAGAAAGCTTCACCATGTAGGATGGTGGTGATATGCTGCTAGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCAGAAAGCTTCACCATGTAGGATGGTGGTGATATGCTGCTAGGT  641

seq1  GAGGAAAGCAGTGGAAGAGGGACATTGAAGAATGAGCCACAGAGCACCCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGCAGTGGAAGAGGGACATTGAAGAATGAGCCACAGAGCACCCT  691

seq1  GGTGAGGGGAAAAGTCTTGTGGAGAAGCAGGCAGCAGAGGTGGATGTAAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGGAAAAGTCTTGTGGAGAAGCAGGCAGCAGAGGTGGATGTAAG  741

seq1  GAAAGAGGTCTTTTCCTTAGTGTACTAGGTATAGTCTTTGAAAGAAAAGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTCTTTTCCTTAGTGTACTAGGTATAGTCTTTGAAAGAAAAGG  791

seq1  AGCAGGCACATCGGAGAGATGTCAGGCTCCAACAACCCATTTACCAAATT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCACATCGGAGAGATGTCAGGCTCCAACAACCCATTTACCAAATT  841

seq1  ACAGTGTGATGAAAGTGTGTGAAAAGACAGATGGGGCATACAGGACTTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGATGAAAGTGTGTGAAAAGACAGATGGGGCATACAGGACTTCA  891

seq1  AAGTTATCAAAGTATCCTCAGAAGAGATAGGGAGCCCTGAGTACCCATCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCAAAGTATCCTCAGAAGAGATAGGGAGCCCTGAGTACCCATCT  941

seq1  TAAAACTGATCAGTCCAACCAATGTCTATTTAAAATGATTTTACCTATAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGATCAGTCCAACCAATGTCTATTTAAAATGATTTTACCTATAA  991

seq1  GAAAGTTCTATAAACTCCCTTTTATCTGAGCATAGAACGGTGAAGATCTG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCTATAAACTCCCTTTTATCTGAGCATAGAACGGTGAAGATCTG  1041

seq1  AAGCCAGAGCAAGTTCAAGGATTGTTTGTTAGTCCTCCAGTATTTACAAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGCAAGTTCAAGGATTGTTTGTTAGTCCTCCAGTATTTACAAG  1091

seq1  ACCTTATTTACCTTTAAAAAGACAGCTATGGATTGTCAAGTACCAGATCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTTACCTTTAAAAAGACAGCTATGGATTGTCAAGTACCAGATCT  1141

seq1  CTTCACTTATGCCTTGTGAATAAAATTAGACATTACAAAACACTAAAAAT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTATGCCTTGTGAATAAAATTAGACATTACAAAACACTAAAAAT  1191

seq1  GTCTCAGAATTC  1200
      ||||||||||||
seq2  GTCTCAGAATTC  1203


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