BAC Information

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BAC

Clone NameB6Ng01-260P17
Chromosome15 (Build37)4 (Build37)
Map Location 82,583,705 - 82,583,9488,329,241 - 8,329,761
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200
Downstream gene1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P17.bB6Ng01-260P17.g
ACCGA065764GA065765
length9981,039
definitionB6Ng01-260P17.b B6Ng01-260P17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,583,705 - 82,583,948)(8,329,241 - 8,329,761)
sequence
gaattcatgtggagtaagctaaagtatgaaatgtcctttagatattgtgc
accagtgatcatatgcaattaatatgcataatatacaaccattctcgttt
tgttggcattagatttttgttgttgttgttgtgttgacttcttttttatt
atatattttcttcatttacatttcaaatgctatcccatttcctagtttac
tctccaaaagtcacctataccctccccccaccctgctacccaacctaccc
aatcccatttcctggccctggcattcccctgtactggggtatataatcat
cgcaagaccaagggcctctcctcccattgatggcctgactaggccatcct
ctgctacatatgcagctagaaacacaagctatgggggtactggttagttc
atgctgttgttcctcctatagggttacagaccccttcagctccttgagta
ctttctctagctccttcaggggggaacgtgtgttccatccaatagatgac
tgtgagcatctacttctgtatttgccaggcactgatataccctcacaaga
gacagctatattagggtcttgtcagcaaaatttgttggcatatgaaatat
tgtctgcatttggtggttgcttatgggatggatcccagggtggggcagtc
tctgaatggccctccccttcatctcagctccaaactttgtctcaattatt
ccttccatggatattttgttccccattctaagaagaaatgaagtatacac
actttggtcttccttcttgagtttcttgtgttttgcaaattgtatctcag
gtattctaagtttctgggctaatatccacttatcagtgagtgcatatcat
gtgtgttcttttgtgattgggttacctcactcaggatgatgccctccagg
tccatccatttggctaggaatttcataattcattctttttaatagctgag
tagtactccattgtgtaaatgtaccacattttctgtatccattgctct
gaattcctcttggaggatttttacctttgatgagtatgaagtgcccctcc
ttgtcttttttgataactttggggtggaagtccattttattcgatattag
aatggctactccagcttgtttcttcagaccatttgcttggaaaattgttt
tccagcctttcattctgaggtagtgtctgtctttttccctgagatgggtt
tcctgtaagtagcaaaatgttgggtcctttttgtgtagccagtctgttag
tctatttctttttattggggagtttagttcattgatattaagagatatta
aggaaaagtaattgttgtttccttttatttttgttgttagagttggcatt
ctgttcttgtggttgtctttttttaggtttgttgaaggatccctttcttg
ctttttctagggcatggtttctgtccttgtatttttttttttttctgtta
ttatcctttgaaggctggattcattgaaagataatgtgtgaatttggttt
tgtggtggaatactttggtttctctgtctatggcaattgagagtttggct
gggtatagtagcctgggctggcatttgtgtttgcttagtgtctgtataac
atctgtccaggatcttctggctttcatagtctctggtgaaaagtctcgtg
taattctgataggcctgccttttatatgttacttgaccctcttcccttac
tgcttttaaatattctatctttatttagtgcatttgctgctctgattatt
atgtgtcgggaggaatttcttttctagtccagtctatttgtagttctgta
ggcttcttgtatgttcatgggcatgtctttcttaaggtttggggaagttt
tctttataattttgtttgatgatatttgctggccctttaagttgaaaatt
cttcattcttcatctactcctattatccgtaaggtttggtcttctcgtgg
gtcctttattcctgggtgtttgagttaggattcctttgcatttgcattgc
tttggttgtggaccaagtctctatggaatcttctgcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82583705_82583948
seq2: B6Ng01-260P17.b_162_417

seq1  TTTTGTTGTTGTTGTTGTTTTAGGAGTATTTCTTTTTTATTAGATATTTT  50
      |||||||||||||||||| ||      | ||||||||||||| |||||||
seq2  TTTTGTTGTTGTTGTTGTGTT-----GACTTCTTTTTTATTATATATTTT  45

seq1  CTTCATTTACATTTCAAATGCTATC-------------------CTGAAA  81
      |||||||||||||||||||||||||                   |  |||
seq2  CTTCATTTACATTTCAAATGCTATCCCATTTCCTAGTTTACTCTCCAAAA  95

seq1  GTCCCCTATACCCTCCCCCACACACCCTGCCCCCCAACCCACCCACTCCT  131
      ||| |||||||||||||||   ||||||||  ||||||| ||||| ||| 
seq2  GTCACCTATACCCTCCCCC---CACCCTGCTACCCAACCTACCCAATCCC  142

seq1  GCTTCCTCACCCTGGCATTCCCCTGTACTTGGGCATATAATCTTCGCAAG  181
        |||||  |||||||||||||||||||| ||| |||||||| |||||||
seq2  ATTTCCTGGCCCTGGCATTCCCCTGTACTGGGGTATATAATCATCGCAAG  192

seq1  ACCAAGGGCCTCTCCTCCCATTGATGGCCT-ACTAGGCCATTCTCTGCTA  230
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ACCAAGGGCCTCTCCTCCCATTGATGGCCTGACTAGGCCATCCTCTGCTA  242

seq1  CATATGCAACTAGA  244
      |||||||| |||||
seq2  CATATGCAGCTAGA  256

seq1: chr4_8329241_8329761
seq2: B6Ng01-260P17.g_587_1106 (reverse)

seq1  GTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAACGGCA  50
      |||||||||||||||||||| || |  |  | |||| ||||| || |   
seq2  GTGCAGAAGATTCCATAGAG-ACTT--GGTCCACAACCAAAGCAATG--C  45

seq1  AAATGAAAAAG-ATCCTAACTCAAAACATCCAGGAAATCCAGGGCACAAT  99
      ||||| ||| | |||||||||| ||||| ||||| |||  ||| | | | 
seq2  AAATGCAAAGGAATCCTAACTC-AAACACCCAGG-AATAAAGGAC-CCAC  92

seq1  GAGAAGATCAAACC-TACGGATAATAGGAGTTGATG-AGAATGAAG-GTT  146
      ||||||| |||||| |||||||||||||||| |||| |||||||||  ||
seq2  GAGAAGACCAAACCTTACGGATAATAGGAGTAGATGAAGAATGAAGAATT  142

seq1  TTCAACTTAAAGGGCCAGCAAATATCTTC-AACAAAATTATAGAAGAAAA  195
      |||||||||||||||||||||||||| || |||||||||||| |||||||
seq2  TTCAACTTAAAGGGCCAGCAAATATCATCAAACAAAATTATA-AAGAAAA  191

seq1  CTT-CCCAAACCTAAAAAATGACATGCCCATGAACATACAAGAAGCCTAC  244
      ||| ||||||||| || || ||||||||||||||||||||||||||||||
seq2  CTTCCCCAAACCTTAAGAAAGACATGCCCATGAACATACAAGAAGCCTAC  241

seq1  AGAACTCCAAATAGACTGGACCAGAAAAGACATTCCTCCCGACACATAAT  294
      |||||| |||||||||||||| |||||||| |||||||||||||||||||
seq2  AGAACTACAAATAGACTGGACTAGAAAAGAAATTCCTCCCGACACATAAT  291

seq1  AATCAGAACAACAAATGCACTAAATAAAGAGAGAATA-TTAAAAGCAGTA  343
      ||||||| || ||||||||||||||||||| |||||| ||||||||||||
seq2  AATCAGAGCAGCAAATGCACTAAATAAAGATAGAATATTTAAAAGCAGTA  341

seq1  AGGGAGAAAGGTCAAGTAACATAT-AAAGGCAGGCCTATCAGAATTACAC  392
      |||||  | ||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGAAGAGGGTCAAGTAACATATAAAAGGCAGGCCTATCAGAATTACAC  391

seq1  CAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTT  442
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGACTTTTCACCAGAGACTATGAAAGCCAGAAGATCCTGGACAGATGTT  441

seq1  ATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCGGC  492
      ||||||||||||||  ||||||||| ||||||||||||||||||||| ||
seq2  ATACAGACACTAAGCAAACACAAATGCCAGCCCAGGCTACTATACCCAGC  491

seq1  CAAACTCTCAATTACCATAGATGGAGAAA  521
      ||||||||||||| |||||||  ||||||
seq2  CAAACTCTCAATTGCCATAGACAGAGAAA  520