BAC Information

Click to search

BAC

Clone NameB6Ng01-261D19
Chromosome4 (Build37)
Map Location 13,724,614 - 13,906,036
singlet/doubletdoublet
Overlap geneRunx1t1
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261D19.bB6Ng01-261D19.g
ACCGA065957GA065958
length1,1031,141
definitionB6Ng01-261D19.b B6Ng01-261D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,724,614 - 13,725,719)(13,904,927 - 13,906,036)
sequence
gaattcatttattttcctcttctggaaaccacaaagtatttgatcacata
catattgcattaaatcctttttgtctttggaaacgtatgtagagagagta
actacagaagacaactgttcttcataggtaagccactttctgaggaggag
ttgtctgtctaagagcatatgacgctgcttggcacccagtgtcccgttgt
ccattcagcaaacacttcttcaaggagcccctgctctaaaagaggcgcat
ttagagatgctgtgcattcctagtcagcaagacttgtcaatttctcctcc
tgttcggatctgaaaggggggagataaactttaaacagagaaagagatgc
actaggtaatttcagagagggataaagcagctaataaaacagctgaaggg
cggcttaggtgcgagcatgggacgcccatttagattgggttgtcagggaa
tgtacctttaagaatgtgacatttttcctgaggtctgagtgccaggaaga
ttcagtggcctagaaatatcaaatgtatctccttggagatgcaagtatga
ttgacatttagccatggcagggtagcttgaaccaagttcagggctagcca
gcccagcgttctgagttgatttgtttgttttgttttgttttgttttgttt
tgttttgttttgtattttcctcttttatttgtgtgtctggaaggcatcag
agactttaagctagtaagtgacaggatcaaaattggtttttcagaagata
aattgagctgcttctgtgtcttccatttagtaagcatcctctataatgga
agggggagatgagttttaaattcattgaggtttgcacttaaattggcatt
agcatggattattatttattttaatcacttggtttgggctaagtaatttt
ggaggcatggtctcatgtccaggggtggccctgaactcactaagtaatgc
ctgttctctctgaactcacgcatctcctgtttcactcccaagtgcttaga
ttataggcatgtgccacatctgtcagcaattactgccaaggccatacatc
atctcttggatttagctagctattccgcttgatgttgaccttgagtggca
ttt

gaattctccccactgctcttccacaaacttctcaagtttcattcaaggtg
ggtctctgcttctacctcagtcagcttctgtgtggagcttcccaaaggac
aggcatgctaggctcctgtctgcaagcacaacagagcaccatcaatagtg
tcagggacaggttcccacccataagatgggtcccaagttgggccagccat
tgactggtcattccctcagtccctacttcatccctgtccacatggttttc
tttaggggtctagacactgggagttcagccatgctccagtgaatataagg
gcaacacaagttgttcttgagtgttttgctttttttttgaggagaggggt
gtcacaatggtgggggacagacatggaaagactggaaagagagtttgtga
acaggtgagatatttgcaaaagaagcaaggaaacagagaaagataataaa
atttgctatcaggttagctagtattatgaaccatgtctaaagaaaccata
aaagtatttcaaagatccttacttgaaggacaccaggatggtacattttc
atcttccctcttttagccaagagtaagagaacctcatgagaatggatttt
tctacttggtagctatatcctaagttaggaaatcctaggtcagaagaaag
aagaacatcctatagactaaagagatgattcaggtcacagctgacaggta
agatagaagccatagactttctacttcagagaacagagaggagaaaaagg
atgcaaactgccttagtagatgtaaaccaatataatctatagcctggatg
gaaagtaattactgaggttaccaagcaactagactcattcccctaattga
agacagggagaagattttttccttgatggtacagtgggtcagagagaaaa
taaagacatttgcagtaaaccccaaaggagtcagctaagtggtggtatat
cctttcaagatgaaatgggattaaaggaataaccaaaatgtcttcttttt
ctaacaaacatttcaaaccacattgaaataatgaattactaaaccttctg
gtccaataaagtttattatatggcagtggcctcaaaccctgaatgaccta
aaatgaatggccaattttttcaaacatccacttaatcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13724614_13725719
seq2: B6Ng01-261D19.b_47_1149

seq1  GAATTCATTTATTTTCCTCTTCTGGAAACCACAAAGTATTTGATCACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATTTTCCTCTTCTGGAAACCACAAAGTATTTGATCACATA  50

seq1  CATATTGCATTAAATCCTTTTTGTCTTTGGAAACGTATGTAGAGAGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGCATTAAATCCTTTTTGTCTTTGGAAACGTATGTAGAGAGAGTA  100

seq1  ACTACAGAAGACAACTGTTCTTCATAGGTAAGCCACTTTCTGAGGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAAGACAACTGTTCTTCATAGGTAAGCCACTTTCTGAGGAGGAG  150

seq1  TTGTCTGTCTAAGAGCATATGACGCTGCTTGGCACCCAGTGTCCCGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCTAAGAGCATATGACGCTGCTTGGCACCCAGTGTCCCGTTGT  200

seq1  CCATTCAGCAAACACTTCTTCAAGGAGCCCCTGCTCTAAAAGAGGCGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAGCAAACACTTCTTCAAGGAGCCCCTGCTCTAAAAGAGGCGCAT  250

seq1  TTAGAGATGCTGTGCATTCCTAGTCAGCAAGACTTGTCAATTTCTCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATGCTGTGCATTCCTAGTCAGCAAGACTTGTCAATTTCTCCTCC  300

seq1  TGTTCGGATCTGAAAGGGGGGAGATAAACTTTAAACAGAGAAAGAGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGGATCTGAAAGGGGGGAGATAAACTTTAAACAGAGAAAGAGATGC  350

seq1  ACTAGGTAATTTCAGAGAGGGATAAAGCAGCTAATAAAACAGCTGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTAATTTCAGAGAGGGATAAAGCAGCTAATAAAACAGCTGAAGGG  400

seq1  CGGCTTAGGTGCGAGCATGGGACGCCCATTTAGATTGGGTTGTCAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTAGGTGCGAGCATGGGACGCCCATTTAGATTGGGTTGTCAGGGAA  450

seq1  TGTACCTTTAAGAATGTGACATTTTTCCTGAGGTCTGAGTGCCAGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTTAAGAATGTGACATTTTTCCTGAGGTCTGAGTGCCAGGAAGA  500

seq1  TTCAGTGGCCTAGAAATATCAAATGTATCTCCTTGGAGATGCAAGTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGCCTAGAAATATCAAATGTATCTCCTTGGAGATGCAAGTATGA  550

seq1  TTGACATTTAGCCATGGCAGGGTAGCTTGAACCAAGTTCAGGGCTAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTAGCCATGGCAGGGTAGCTTGAACCAAGTTCAGGGCTAGCCA  600

seq1  GCCCAGCGTTCTGAGTTGATTTGTTTGTTTTGTTTTGTTTTGTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCGTTCTGAGTTGATTTGTTTGTTTTGTTTTGTTTTGTTTTGTTT  650

seq1  TGTTTTGTTTTGTATTTTCCTCTTTTATTTGTGTGTCTGGAAGGCATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTATTTTCCTCTTTTATTTGTGTGTCTGGAAGGCATCAG  700

seq1  AGACTTTAAGCTAGTAAGTGACAGGATCAAAATTGGTTTTTCAGAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAAGCTAGTAAGTGACAGGATCAAAATTGGTTTTTCAGAAGATA  750

seq1  AATTGAGCTGCTTCTGTGTCTTCCATTTAGTAAGCATCCTCTATAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGCTGCTTCTGTGTCTTCCATTTAGTAAGCATCCTCTATAATGGA  800

seq1  AGGGGGAGATGAGTTTTAAATTCATTGAGGTTTGCACTTAAATTGGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAGATGAGTTTTAAATTCATTGAGGTTTGCACTTAAATTGGCATT  850

seq1  AGCATGGATTATTATTTATTTTAATCACTTGGTTT-GGCTAAGTAATTTT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCATGGATTATTATTTATTTTAATCACTTGGTTTGGGCTAAGTAATTTT  900

seq1  TGAGGCATGGTCTCATGTCCA-GGGTGGCCCTGAACTCACTAAGTAATGC  948
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGGCATGGTCTCATGTCCAGGGGTGGCCCTGAACTCACTAAGTAATGC  950

seq1  CTGTTCTCTCTGAACTCACGCATCTCCTGTTTCCACTCCCAAGTGC-TAG  997
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CTGTTCTCTCTGAACTCACGCATCTCCTGTTT-CACTCCCAAGTGCTTAG  999

seq1  ATTATAGGCATGTGCCACATTCTGTCCAGCATATACTGCC-AGGGCATAC  1046
      ||||||||||||||||||| ||||| |||||  ||||||| ||| |||||
seq2  ATTATAGGCATGTGCCACA-TCTGT-CAGCAATTACTGCCAAGGCCATAC  1047

seq1  AACCATCTCTTGGATTTTAGCCTAGCTATT-CGCTTGGTGTTTGACTCTG  1095
       | ||||||||||| ||||| ||||||||| |||||| || |||||  ||
seq2  -ATCATCTCTTGGA-TTTAG-CTAGCTATTCCGCTTGATG-TTGACCTTG  1093

seq1  AGTGGCCATTT  1106
      ||||| |||||
seq2  AGTGG-CATTT  1103


seq1: chr4_13904927_13906036
seq2: B6Ng01-261D19.g_71_1211 (reverse)

seq1  TGAAGA-TAAGT-GATG-TTGAAAAAAT--GGCATTCATTTTA-GTCATT  44
      |||||| ||||| |||| ||||||||||  | ||||||||||| ||||||
seq2  TGAAGATTAAGTGGATGTTTGAAAAAATTGGCCATTCATTTTAGGTCATT  50

seq1  CAGGG-TTGAG--CACTG-CATATAAT-AACCTTATGGGACCAGAA-GTT  88
      ||||| |||||  ||||| |||||||| ||| |||| ||||||||| |||
seq2  CAGGGTTTGAGGCCACTGCCATATAATAAACTTTATTGGACCAGAAGGTT  100

seq1  TAGTAA-TCAATATT--CATGTGG-TTGAAATG-TTGTTAG-AAAAGAAG  132
      |||||| ||| ||||   |||||| |||||||| ||||||| ||||||||
seq2  TAGTAATTCATTATTTCAATGTGGTTTGAAATGTTTGTTAGAAAAAGAAG  150

seq1  ACA-TTTGGTTAT--CCTTAATCC--ATTCATCTTGAAGG---ATACCAC  174
      ||| |||||||||  | |||||||   ||||||||||| |   |||||||
seq2  ACATTTTGGTTATTCCTTTAATCCCATTTCATCTTGAAAGGATATACCAC  200

seq1  CACTTAGCTGACTCCTT--GGGGTTACTGCAAATGTCTTTATTTTCTCTC  222
      |||||||||||||||||  ||| |||||||||||||||||||||||||||
seq2  CACTTAGCTGACTCCTTTGGGGTTTACTGCAAATGTCTTTATTTTCTCTC  250

seq1  TGA-CCACTGTACCATCAAGG-AAAAATCTTCTCCCTGTCTTCAATTAGG  270
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGACCCACTGTACCATCAAGGAAAAAATCTTCTCCCTGTCTTCAATTAGG  300

seq1  GGAATGAGTCTAGTTGCTTGGTAACCTCAGTAATTACTTTCCATCCAGGC  320
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGTCTAGTTGCTTGGTAACCTCAGTAATTACTTTCCATCCAGGC  350

seq1  TATAGATTATATTGG-TTACATCTACTAAGGCAGTTTGCATCCTTTTTCT  369
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATAGATTATATTGGTTTACATCTACTAAGGCAGTTTGCATCCTTTTTCT  400

seq1  CCTCTCTGTTCTCTGAAGTAGAAAGTCTATGGCTTCTATCTTACCTGTCA  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTTCTCTGAAGTAGAAAGTCTATGGCTTCTATCTTACCTGTCA  450

seq1  GCTGTGACCTGAATCATCTCTTTAGTCTATAGGATGTTCTTCTTTCTTCT  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACCTGAATCATCTCTTTAGTCTATAGGATGTTCTTCTTTCTTCT  500

seq1  GACCTAGGATTTCCTAACTTAGGATATAGCTACCAAGTAGAAAAATCCAT  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGGATTTCCTAACTTAGGATATAGCTACCAAGTAGAAAAATCCAT  550

seq1  TCTCATGAGGTTCTCTTACTCTTGGCTAAAAGAGGGAAGATGAAAATGTA  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAGGTTCTCTTACTCTTGGCTAAAAGAGGGAAGATGAAAATGTA  600

seq1  CCATCCTGGTGTCCTTCAAGTAAGGATCTTTGAAATACTTTTATGGTTTC  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGGTGTCCTTCAAGTAAGGATCTTTGAAATACTTTTATGGTTTC  650

seq1  TTTAGACATGGTTCATAATACTAGCTAACCTGATAGCAAATTTTATTATC  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACATGGTTCATAATACTAGCTAACCTGATAGCAAATTTTATTATC  700

seq1  TTTCTCTGTTTCCTTGCTTCTTTTGCAAATATCTCACCTGTTCACAAACT  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTTTCCTTGCTTCTTTTGCAAATATCTCACCTGTTCACAAACT  750

seq1  CTCTTTCCAGTCTTTCCATGTCTGTCCCCCACCATTGTGACACCCCTCTC  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGTCTTTCCATGTCTGTCCCCCACCATTGTGACACCCCTCTC  800

seq1  CTCAAAAAAAAAGCAAAACACTCAAGAACAACTTGTGTTGCCCTTATATT  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAAAAAAGCAAAACACTCAAGAACAACTTGTGTTGCCCTTATATT  850

seq1  CACTGGAGCATGGCTGAACTCCCAGTGTCTAGACCCCTAAAGAAAACCAT  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGCATGGCTGAACTCCCAGTGTCTAGACCCCTAAAGAAAACCAT  900

seq1  GTGGACAGGGATGAAGTAGGGACTGAGGGAATGACCAGTCAATGGCTGGC  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGGGATGAAGTAGGGACTGAGGGAATGACCAGTCAATGGCTGGC  950

seq1  CCAACTTGGGACCCATCTTATGGGTGGGAACCTGTCCCTGACACTATTGA  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGGGACCCATCTTATGGGTGGGAACCTGTCCCTGACACTATTGA  1000

seq1  TGGTGCTCTGTTGTGCTTGCAGACAGGAGCCTAGCATGCCTGTCCTTTGG  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCTGTTGTGCTTGCAGACAGGAGCCTAGCATGCCTGTCCTTTGG  1050

seq1  GAAGCTCCACACAGAAGCTGACTGAGGTAGAAGCAGAGACCCACCTTGAA  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCACACAGAAGCTGACTGAGGTAGAAGCAGAGACCCACCTTGAA  1100

seq1  TGAAACTTGAGAAGTTTGTGGAAGAGCAGTGGGGAGAATTC  1110
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTGAGAAGTTTGTGGAAGAGCAGTGGGGAGAATTC  1141


| Home | SequenceCutter | Blast | Download |