BAC Information

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BAC

Clone NameB6Ng01-261I21
Chromosome4 (Build37)
Map Location 94,162,837 - 94,271,382
singlet/doubletdoublet
Overlap gene5830433M19Rik, Plaa, LOC667250
Upstream genenone
Downstream geneLrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261I21.bB6Ng01-261I21.g
ACCGA066195GA066196
length1,2131,109
definitionB6Ng01-261I21.b B6Ng01-261I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,270,165 - 94,271,382)(94,162,837 - 94,163,937)
sequence
gaattcttcctgtagccagaatgacctagacctcattagataggctatgc
ttcattctcatgatcctcctgcatcagcctctcatagcactagtttttgt
ttgttttaggaatctagaaacaacaacttcaaacatggtatgttcagaga
aagatggcaaattcaatatggctgaggcagacacacacctaagggaaaag
accttagcaaaataaattagggaaatggggaaggccttatacaacagtgt
attctcaagaacgaaaagctgttggggctggagagattactcagtggtta
agagcactggctgctcttccagaggtcctgaattcaatttccagaaacca
catggtggttcacaaccatctggaatgggcacccgatgccactttctggt
gtgtctgaaggcagcgacagtatacctacattcatgaaataaatcgacat
aaaaaaataaataacgaaaagctattggggttaccgaacaaagtggaata
atacatttcagagctaaagtcaagagaaacacacacacacacagaggaat
agtgatttcaagcctagaatgaaagttttaagaagagtgaagaaaaacac
acaaattggatttggcaacttaacaaaggtttgtggtgtgatggatgccg
tgctacaatacggaaagctaactttactacaatgtagactgacaatctca
atgcaatgtagtgagactcctacctacaccatcggggtttggctaaaaat
atatattctcacctgtaatttcagagttcagagactggagcaaggaacca
cgagttttaggctagcccgagctaccgtaagaccttttaaataattaaag
gcattttctgcttcaccttagaccttctgcgccaaacctcgggcaaacag
tggtcacgttaggggagaatgggcaccgatcattctgcaaaatctggtat
tataggggtagcttgaggtgaaggcaagttcattaaaagtttccactttg
ggcttcagattcagtcatcttaaatgaaaaaaaaaacattactgatgaaa
tcttgggagactcttccagaattcagcagaaaatgggccaacaaatcgtg
ggcgtaaggcaaacagcatttgctcctacctactcgagtagtcaacaaga
cactagattgaacttcggattcagcggccggcgagtatcatctcggaacc
gctcggcaatgtg

gaattcaggctggtctggcggcacatgactctaattccagtgctaggaag
atgaagcaacagggtgcttaccacgaattcgcctgagcgaatggttcaaa
tgagcccagcatgggctacatagaaaaaccatgtctctggccaacaagat
gactgactgggcaaaaccaaatgcttcgaccctgaagacctaattgcatt
tgcagaacccacaggatgcaagaagaaaagtaactcctaagttgtccact
catctacacacacacacacacacacacacacacacaattgtgaggactca
catgcaaaaataaataaaatttattttttaaaaagatttatttatgtata
taagtacactgtagctatcttcagacacaccagaagagggcaccggatcc
ctttacagatggttgtgagccaccatgtggttgctgagaattgaactcag
gacctctggaagagcagtcagtgctcttaaccactgaaccatcttgccag
ccccaataaaattgatttttaattaaaaattttcgtctcaaagtctagtg
gagctggagaggtggcagagcgagttaagtatctactgccctttaaaggt
atcccgagtgggttcccagtactcaaagaaggttgctcacaactgcctgt
aactccagcttcagaggctccacaggaacctgtgttcacatacacacaaa
cacatataaatgaaaacagaaaatcattttttttaaagtctacttgaata
taagatggcaatgtaaaaataggaagatggctgccaacttgactaaccat
gatgttctgcagtgtctgaagattatagacatcttgggaccaggtatatt
gcttctctaccaccccttcttgaatatgaagaaaaaactgatccctgagg
aattcttcccattcctttatcctaaaactggtgtaacatggcccttacat
gcttggacatgggcttatcttgtatttttctatccaaagaaataaatgta
attaactcagagacctttctctatcatattcagtagtaaggctgactatg
ggattaaaaattatagtaacttttattagaatttatgaataaactttagt
aagccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_94270165_94271382
seq2: B6Ng01-261I21.b_43_1255 (reverse)

seq1  CACAATGCCGAGC-GTCCCGAG-TG--ACTCGCCGGCGCGCTGAATCCGG  46
      |||| |||||||| || ||||| ||  |||||||||| ||||||||||| 
seq2  CACATTGCCGAGCGGTTCCGAGATGATACTCGCCGGC-CGCTGAATCCGA  49

seq1  ATGTTTTAAATCTAGGTGCTCGTTTGACTACTCTGAGTA-GTA-GAGCAA  94
      |    || |||||||   || | |||||||||| ||||| ||| ||||||
seq2  A---GTTCAATCTAGTGTCTTG-TTGACTACTC-GAGTAGGTAGGAGCAA  94

seq1  AATTGCTTGTTTGCCTTACG-CCACGATTTGTTTGCCCATTTTCTGCTTG  143
      |  ||| ||||||||||||| |||||||||||| ||||||||||||||  
seq2  A--TGC-TGTTTGCCTTACGCCCACGATTTGTTGGCCCATTTTCTGCTGA  141

seq1  ATTCTGG-AGAGTCTCCCAAGATTTTCATCAGTTAATTGTTTTTTTTTTC  192
      ||||||| |||||||||||||| ||||||||||  | |||||||||||||
seq2  ATTCTGGAAGAGTCTCCCAAGA-TTTCATCAGT--AATGTTTTTTTTTTC  188

seq1  ATTTAAGATGACTGAATCTGAAG-CCAAAGTGGGAACTTTTAATGAACTT  241
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ATTTAAGATGACTGAATCTGAAGCCCAAAGTGGAAACTTTTAATGAACTT  238

seq1  GCCTTCACCTCAAGCTACCCCCTATAATACCAGATTTTGCAGAATGATCG  291
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GCCTTCACCTCAAGCTA-CCCCTATAATACCAGATTTTGCAGAATGATC-  286

seq1  GGTGCCCATTCTCCCCTAACGTGACCACTGTTTGCCCGAGGTTTGGCGCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCATTCTCCCCTAACGTGACCACTGTTTGCCCGAGGTTTGGCGCA  336

seq1  GAAGGTCTAAGGTGAAGCAGAAAATGCCTTTAATTATTTAAAAGGTCTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTAAGGTGAAGCAGAAAATGCCTTTAATTATTTAAAAGGTCTTA  386

seq1  CGGTAGCTCGGGCTAGCCTAAAACTCGTGGTTCCTTGCTCCAGTCTCTGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCTCGGGCTAGCCTAAAACTCGTGGTTCCTTGCTCCAGTCTCTGA  436

seq1  ACTCTGAAATTACAGGTGAGAATATATATTTTTAGCCAAACCCCGATGGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAATTACAGGTGAGAATATATATTTTTAGCCAAACCCCGATGGT  486

seq1  GTAGGTAGGAGTCTCACTACATTGCATTGAGATTGTCAGTCTACATTGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGGAGTCTCACTACATTGCATTGAGATTGTCAGTCTACATTGTA  536

seq1  GTAAAGTTAGCTTTCCGTATTGTAGCACGGCATCCATCACACCACAAACC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTAGCTTTCCGTATTGTAGCACGGCATCCATCACACCACAAACC  586

seq1  TTTGTTAAGTTGCCAAATCCAATTTGTGTGTTTTTCTTCACTCTTCTTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAGTTGCCAAATCCAATTTGTGTGTTTTTCTTCACTCTTCTTAA  636

seq1  AACTTTCATTCTAGGCTTGAAATCACTATTCCTCTGTGTGTGTGTGTGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCATTCTAGGCTTGAAATCACTATTCCTCTGTGTGTGTGTGTGTT  686

seq1  TCTCTTGACTTTAGCTCTGAAATGTATTATTCCACTTTGTTCGGTAACCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGACTTTAGCTCTGAAATGTATTATTCCACTTTGTTCGGTAACCC  736

seq1  CAATAGCTTTTCGTTATTTATTTTTTTATGTCGATTTATTTCATGAATGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTTTTCGTTATTTATTTTTTTATGTCGATTTATTTCATGAATGT  786

seq1  AGGTATACTGTCGCTGCCTTCAGACACACCAGAAAGTGGCATCGGGTGCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACTGTCGCTGCCTTCAGACACACCAGAAAGTGGCATCGGGTGCC  836

seq1  CATTCCAGATGGTTGTGAACCACCATGTGGTTTCTGGAAATTGAATTCAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGATGGTTGTGAACCACCATGTGGTTTCTGGAAATTGAATTCAG  886

seq1  GACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGTAATCTCTCCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGTAATCTCTCCAG  936

seq1  CCCCAACAGCTTTTCGTTCTTGAGAATACACTGTTGTATAAGGCCTTCCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAGCTTTTCGTTCTTGAGAATACACTGTTGTATAAGGCCTTCCC  986

seq1  CATTTCCCTAATTTATTTTGCTAAGGTCTTTTCCCTTAGGTGTGTGTCTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTAATTTATTTTGCTAAGGTCTTTTCCCTTAGGTGTGTGTCTG  1036

seq1  CCTCAGCCATATTGAATTTGCCATCTTTCTCTGAACATACCATGTTTGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCATATTGAATTTGCCATCTTTCTCTGAACATACCATGTTTGAA  1086

seq1  GTTGTTGTTTCTAGATTCCTAAAACAAACAAAAACTAGTGCTATGAGAGG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTCTAGATTCCTAAAACAAACAAAAACTAGTGCTATGAGAGG  1136

seq1  CTGATGCAGGAGGATCATGAGAATGAAGCATAGCCTATCTAATGAGGTCT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCAGGAGGATCATGAGAATGAAGCATAGCCTATCTAATGAGGTCT  1186

seq1  AGGTCATTCTGGCTACAGGAAGAATTC  1218
      |||||||||||||||||||||||||||
seq2  AGGTCATTCTGGCTACAGGAAGAATTC  1213


seq1: chr4_94162837_94163937
seq2: B6Ng01-261I21.g_67_1175

seq1  GAATTCAGGCTGGTCTGGCGGCACATGACTCTAATTCCAGTGCTAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTGGTCTGGCGGCACATGACTCTAATTCCAGTGCTAGGAAG  50

seq1  ATGAAGCAACAGGGTGCTTACCACGAATTCGCCTGAGCGAATGGTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAACAGGGTGCTTACCACGAATTCGCCTGAGCGAATGGTTCAAA  100

seq1  TGAGCCCAGCATGGGCTACATAGAAAAACCATGTCTCTGGCCAACAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGCATGGGCTACATAGAAAAACCATGTCTCTGGCCAACAAGAT  150

seq1  GACTGACTGGGCAAAACCAAATGCTTCGACCCTGAAGACCTAATTGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACTGGGCAAAACCAAATGCTTCGACCCTGAAGACCTAATTGCATT  200

seq1  TGCAGAACCCACAGGATGCAAGAAGAAAAGTAACTCCTAAGTTGTCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACCCACAGGATGCAAGAAGAAAAGTAACTCCTAAGTTGTCCACT  250

seq1  CATCTACACACACACACACACACACACACACACACAATTGTGAGGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACACACACACACACACACACACACACACAATTGTGAGGACTCA  300

seq1  CATGCAAAAATAAATAAAATTTATTTTTTAAAAAGATTTATTTATGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAAATAAATAAAATTTATTTTTTAAAAAGATTTATTTATGTATA  350

seq1  TAAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGCACCGGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACACTGTAGCTATCTTCAGACACACCAGAAGAGGGCACCGGATCC  400

seq1  CTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGAGAATTGAACTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGAGAATTGAACTCAG  450

seq1  GACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTTGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAACCATCTTGCCAG  500

seq1  CCCCAATAAAATTGATTTTTAATTAAAAATTTTCGTCTCAAAGTCTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATAAAATTGATTTTTAATTAAAAATTTTCGTCTCAAAGTCTAGTG  550

seq1  GAGCTGGAGAGGTGGCAGAGCGAGTTAAGTATCTACTGCCCTTTAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGAGGTGGCAGAGCGAGTTAAGTATCTACTGCCCTTTAAAGGT  600

seq1  ATCCCGAGTGGGTTCCCAGTACTCAAAGAAGGTTGCTCACAACTGCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAGTGGGTTCCCAGTACTCAAAGAAGGTTGCTCACAACTGCCTGT  650

seq1  AACTCCAGCTTCAGAGGCTCCACAGGAACCTGTGTTCACATACACACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGCTTCAGAGGCTCCACAGGAACCTGTGTTCACATACACACAAA  700

seq1  CACATATAAATGAAAACAGAAAATCA-TTTTTTTAAAGTCTACTTGAATA  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACATATAAATGAAAACAGAAAATCATTTTTTTTAAAGTCTACTTGAATA  750

seq1  TAAGATGGCAATGTAAAAATAGGAAGATGGCTGCCAACTTGACTAACCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGCAATGTAAAAATAGGAAGATGGCTGCCAACTTGACTAACCAT  800

seq1  GATGTTCTGCAGTGTCTGAAGATTATAGACATCTTGGGACCAGGTATATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTGCAGTGTCTGAAGATTATAGACATCTTGGGACCAGGTATATT  850

seq1  GCTTCTCTACCACCCCTTCTTGAATATGAAGAAAAAACTGATCCCTGAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTACCACCCCTTCTTGAATATGAAGAAAAAACTGATCCCTGAGG  900

seq1  AATTCTTCCCATTCCTTTATCCTAAAACTGGTGTAACATGGCCC-TACAT  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTCTTCCCATTCCTTTATCCTAAAACTGGTGTAACATGGCCCTTACAT  950

seq1  GCTTGGACATGGGCTTATCTTGTA-TTTTCTATCCAAAGAAATAAATGTA  997
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTTGGACATGGGCTTATCTTGTATTTTTCTATCCAAAGAAATAAATGTA  1000

seq1  ATTAACTCAGAGACC-TTCTCTATCATA-TCAGTAGTAAGGCTGACTATG  1045
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  ATTAACTCAGAGACCTTTCTCTATCATATTCAGTAGTAAGGCTGACTATG  1050

seq1  GGATTAAAAATTATAGTAACTTT--ATAGAATTTATGGATAAAC-TTAGT  1092
      |||||||||||||||||||||||   ||||||||||| |||||| |||||
seq2  GGATTAAAAATTATAGTAACTTTTATTAGAATTTATGAATAAACTTTAGT  1100

seq1  AAGCAAAAA  1101
      |||| ||||
seq2  AAGCCAAAA  1109


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