BAC Information

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BAC

Clone NameB6Ng01-261J21
Chromosome4 (Build37)
Map Location 13,175,168 - 13,176,335
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261J21.bB6Ng01-261J21.g
ACCGA066243GA066244
length1,0341,132
definitionB6Ng01-261J21.b B6Ng01-261J21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaactcgttgacatgaaaaggagctctttctctcacaaagctg
ttggattactctcgagatttgaataaaaatctcctttctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
aagaacatataaatgcgtgtgtgggactcacacggtgattctctttatgt
tgctataaattgaagaataaatagctttaactctctggatggtttgtgaa
aggccatatctcccgctctcccatgtaaatactctccttgttttttctct
ctcgtgaggtaaagagtgggaagcaggatcaggactgcatatagacaaag
atctctctatggctatatctctctctcactcacacacagaaatagagaga
cagttgctctcacactctctcacattattgtgggcatgttgactgaatac
agaccccttcaccttttcagagaaatctgaccatccgtgatggtcctcct
tccttcttgctggattctaggttaaacctggagactcatatgggtatctc
aggacctagagtggggtggtaatggcactgaaatgacattgtctgcattt
tgtagtttcaactgttaaaatggtatgtgataatatgtagaacttttatt
tgtacaaaagagatccttttctataaggagtaaaggtatattttaataat
ttgctatatctctctctcactcatgacagttgtgggctatgtgcttatat
tgcctatgcttattatacagagatttatggagtgtcacctctatgttcga
ggcaatctgggtagatgctgaagaacagagtgtcacacgggacgctttgc
tgtaggctgcaaggaatgcaaaaatgatataaagcagagtatgaagtcac
gtgcatgtcaaatagaaagcgtgtgtttgttcgttagtgtacacatggtg
gcttagtcatgatgcgaagagaaggagaacaatccttaacagaaaatata
atgtgacgtagatttctgctctgcacacaataac

gaattctctagattctcaggaaaatctatgtgagtgagcaggactagaga
tgtgtctctgaagttgatgggcttcctccactataaaggaattcttcaaa
gagaatggacaggaagtcacttctctatttttggaactcattaacaaaca
aaagcagactatatgtgccttccacacctatgaacaacttccaagtgacc
ttttatttatatcaccaccacccccccccccaaaaaaaattctccggtaa
gcaattttctatgcacagagttattcctgtagtttggcagatgaggggcg
ggggaggcgaagaggaccacaaacactaagaatcaaatgcaagctcagct
cgtcagttcctctgccaaaaagtgcgctgaagccaacggacctcccacgt
tctccatagtgtgcttctgtgcatggtgatctgcaaatattatcattcca
tgacaatgcagtttcatcaaggtacgtctcaatccatgggatacgagtcc
cacacaacagacggggactttggcggagctgtgtgcacgctgcgtgtgtt
acttactggttatattgcggtggccacactgagtcccgtatggcgcagta
ttaacgaatggcatgcaagcaccttctgtcgaaacatctgcgacagggaa
atttcaggcatttttccagaaaatttttgtgctctggaccaaattttcat
taggactctgaaacctggcaagcagcattgttgtgtatgatttttttttt
ttttttaaataaactgggacatgcctttgttacaggagcgagggaaaggg
ccctgccatggctcccttctattctaaaaagttcaggaaacatatgacag
ctcacaaaataacatctcccaacttttggctttttgtcgacatacaaata
aaattcacagtttgggatatgtagcttttcccatctcaggtagagattcc
aatggaggcttcctcaagaaacggtttgtgaggaggacatgctagcaaca
ggatgatttgtcgtgtttcattttgatgctgctggcagtatataacatca
acgcagagttactggtttaggacagcatgtcagatagaaattaatcaagg
cagtcatttgtacatgctgcttgaactctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13175168_13176335
seq2: B6Ng01-261J21.g_64_1195 (reverse)

seq1  TTTATGAGTTCAAGCAGGCATGTACAAAATGCACCCTGCTCTTTGATTTA  50
      |||| ||||||||||| |||||||| |||||    |||  | |||||| |
seq2  TTTA-GAGTTCAAGCA-GCATGTAC-AAATG---ACTG--CCTTGATTAA  42

seq1  TTTTTCCTAATTCTGGGACATGCTGTCCCCTTAAAACAAGTAAAAACTCT  100
      |||   |||  |||  ||||||||||||     |||| |||   ||||| 
seq2  TTT---CTA--TCT--GACATGCTGTCC----TAAACCAGT---AACTC-  77

seq1  TGCGTGGATTTGTTTTATTTATTTTTTTGGCAGCCAGCATCAAAAATGAA  150
      ||||| ||  |||| ||       |  || ||| ||||||| ||||||||
seq2  TGCGTTGA--TGTTATA-------TACTGCCAG-CAGCATC-AAAATGAA  116

seq1  ACACGAACAAATCATCCCTGTTGCTAGCATGTCCTCCTCACAAACCGTTT  200
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACACG-ACAAATCAT-CCTGTTGCTAGCATGTCCTCCTCACAAACCGTTT  164

seq1  CTTGAGGAAGCCTCCATTGGAATCTCTTACCCTGAGATGGGAAAAGCTAC  250
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  CTTGAGGAAGCCTCCATTGGAATCTCT--ACCTGAGATGGGAAAAGCTAC  212

seq1  ATATCCCAAACTGTGAATTTTATTTGTATGTCGACAAAAAGCCAAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCAAACTGTGAATTTTATTTGTATGTCGACAAAAAGCCAAAAGTT  262

seq1  GGGAGATGTTATTTTGTGAGCTGTCATATGTTTCCTGAACTTTTTAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGTTATTTTGTGAGCTGTCATATGTTTCCTGAACTTTTTAGAAT  312

seq1  AGAAGGGAGCCATGGCAGGGCCCTTTCCCTCGCTCCTGTAACAAAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAGCCATGGCAGGGCCCTTTCCCTCGCTCCTGTAACAAAGGCAT  362

seq1  GTCCCAGTTTATTT--AAAAAAAAAAAAAATCATACACAACAATGCTGCT  448
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTTTATTTAAAAAAAAAAAAAAAATCATACACAACAATGCTGCT  412

seq1  TGCCAGGTTTCAGAGTCCTAATGAAAATTTGGTCCAGAGCACAAAAATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTTTCAGAGTCCTAATGAAAATTTGGTCCAGAGCACAAAAATTT  462

seq1  TCTGGAAAAATGCCTGAAATTTCCCTGTCGCAGATGTTTCGACAGAAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAATGCCTGAAATTTCCCTGTCGCAGATGTTTCGACAGAAGGT  512

seq1  GCTTGCATGCCATTCGTTAATACTGCGCCATACGGGACTCAGTGTGGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATGCCATTCGTTAATACTGCGCCATACGGGACTCAGTGTGGCCA  562

seq1  CCGCAATATAACCAGTAAGTAACACACGCAGCGTGCACACAGCTCCGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAATATAACCAGTAAGTAACACACGCAGCGTGCACACAGCTCCGCCA  612

seq1  AAGTCCCCGTCTGTTGTGTGGGACTCGTATCCCATGGATTGAGACGTACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCGTCTGTTGTGTGGGACTCGTATCCCATGGATTGAGACGTACC  662

seq1  TTGATGAAACTGCATTGTCATGGAATGATAATATTTGCAGATCACCATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAACTGCATTGTCATGGAATGATAATATTTGCAGATCACCATGC  712

seq1  ACAGAAGCACACTATGGAGAACGTGGGAGGTCCGTTGGCTTCAGCGCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCACACTATGGAGAACGTGGGAGGTCCGTTGGCTTCAGCGCACT  762

seq1  TTTTGGCAGAGGAACTGACGAGCTGAGCTTGCATTTGATTCTTAGTGTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAGAGGAACTGACGAGCTGAGCTTGCATTTGATTCTTAGTGTTT  812

seq1  GTGGTCCTCTTCGCCTCCCCCGCCCCTCATCTGCCAAACTACAGGAATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTCTTCGCCTCCCCCGCCCCTCATCTGCCAAACTACAGGAATAA  862

seq1  CTCTGTGCATAGAAAATTGCTTACCGGAGAATTTTTTTTGGGGGGGGGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCATAGAAAATTGCTTACCGGAGAATTTTTTTTGGGGGGGGGGG  912

seq1  TGGTGGTGATATAAATAAAAGGTCACTTGGAAGTTGTTCATAGGTGTGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGATATAAATAAAAGGTCACTTGGAAGTTGTTCATAGGTGTGGA  962

seq1  AGGCACATATAGTCTGCTTTTGTTTGTTAATGAGTTCCAAAAATAGAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATATAGTCTGCTTTTGTTTGTTAATGAGTTCCAAAAATAGAGAA  1012

seq1  GTGACTTCCTGTCCATTCTCTTTGAAGAATTCCTTTATAGTGGAGGAAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCCTGTCCATTCTCTTTGAAGAATTCCTTTATAGTGGAGGAAGC  1062

seq1  CCATCAACTTCAGAGACACATCTCTAGTCCTGCTCACTCACATAGATTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACTTCAGAGACACATCTCTAGTCCTGCTCACTCACATAGATTTT  1112

seq1  CCTGAGAATCTAGAGAATTC  1168
      ||||||||||||||||||||
seq2  CCTGAGAATCTAGAGAATTC  1132


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