BAC Information

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BAC

Clone NameB6Ng01-261K12
Chromosome4 (Build37)
Map Location 91,719,416 - 91,720,569
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664848, LOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik
Downstream geneLOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261K12.bB6Ng01-261K12.g
ACCGA066269GA066270
length9151,159
definitionB6Ng01-261K12.b B6Ng01-261K12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagctgaggaataccgaaaggctgagaagcacctgaaaaattg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccatgagat
tccacctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgagaatgtggagaaagaggaacactcctccattgttggtg
ggattgcaaacttgtacagccactctggaaatcagtcttgcagttcctca
gaaaattggacatggtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccagtaagaaggacacatgctctactatgttc
atagcacccatatttataatagccagaagctggaaagaacccagatgccc
ctcaacagaggaatggatacagaaaatgtggtacatttacacaatggact
actactcagcttttaaaaggaatgaatttatgaaattcctaggcaaatgg
atgaacctgaagggcatcatcctgagtgaggtaactcaatcacaaaagaa
ctcacatgatatgtactcactgataaatggatatcagcccagaaacttag
aatacccaagatataagatacaatgtgcaaaacacatgaaactcaagaag
aatgaagaccaaagtgtagacactttgctccttcttagaattgggaacaa
aacacctgtggaaggagatatggacacaaagattggagctgagacgaaag
gatggaccatctagagaatgccatacccaggattccatcacataatcagc
cttccaaacgtgggacaccattgcacaaactagcaagatgttgctgaagg
accctgatatagctgtctcttgtgaggctatgcttggggccttgccaaca
cataagtgggatgcc

gaattcataattaaatcaaagaactgattcccaagtgctgtctcttgtcc
tccacaagaggattggggcatacatgtgcctgaactcacatacagaatgt
tgatgttagaaggaatgattggataactcagaaatatgagaatgaatagg
gagaaagtttggagctcttacatgtacaaaacagtggatacttaaaatat
caaagtaaaagccgggtgtggtggcacacacctttaatcccagcacttgg
gaggcagaggcaggcagatcaatgagctcgaggccagcctggtctacaga
ttgagttccaggacagccagggctacacagagaactcctgtatcataaaa
taaaaaaaaaaatgaagtgatattatgaacaaatgtggcaaaggccaaat
tagttgaatggaggagtgcttacctagcagactcaagaacccctgcctat
tattgtcatggctctgctgtacaatcatcctgtgtatgtgcaatacagaa
gtatcttaagaaccacaatgtaacaaaattataattatcatttataatta
actaatttaaagtttgcagttcattttgccttccttacatttattaaatg
aaatctatcatcaagttctttatgcttgtttttattctttttgagtgaga
cagaaggagagaagaagggagaaagggagaaaaaaacatcaaggagaatt
tggggaaggggaaagaatctggtcacaatgactgcataaaaaaatccggt
tcatctttttccttttttaaaatcctaattgaattttttatgcaatatgt
tctaatcacactttttttctgtgtaatccctttgatatccctcacctccc
tacccacccaagctcatgcattttcttttttgtttcaaaacaaaaactag
aaacacaaacaatgtcagcaagataaaacccacaaaaatataagcaaagt
atacaagtgaaagaaccaataagaaacacacacctgtgtgcatgcaccct
tcgcagttacacacaacacacacacacggctcaacacacacacagccaaa
aaaagcagaattgagattaaaggtcgacgaaatactattgattctttttt
tatatagaacagtacttctggccatggaacctatcttgaagtttgttaat
atattccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91719416_91720569
seq2: B6Ng01-261K12.g_65_1223 (reverse)

seq1  ATGG-ATATATTAAACAAACTTCAAGATAGTTCCTATGCCCAGAAGTAAT  49
      |||| ||||||| ||||||||||||||||| | | ||| ||||||||| |
seq2  ATGGAATATATT-AACAAACTTCAAGATAGGTTCCATGGCCAGAAGTACT  49

seq1  TGTCTA-ATATAAAAAGAATTCAATAGTATTTCTGTCGACTTTTAATCTC  98
        |||| ||| |||||||| ||||||||||||| |||||| |||||||||
seq2  GTTCTATATAAAAAAAGAA-TCAATAGTATTTC-GTCGACCTTTAATCTC  97

seq1  -ATTCTGCTTTTTTTGGCTGTGTGTGTG-TGAG-CGTGTGTGTGTG-TGT  144
       ||||||||||||||||||||||||||| |||| |||||||||||| |||
seq2  AATTCTGCTTTTTTTGGCTGTGTGTGTGTTGAGCCGTGTGTGTGTGTTGT  147

seq1  GTGTACTTGCG-AGGGTGCATGCACACAGGTGTGTGTTTCTTATTGG-TC  192
      |||||  |||| ||||||||||||||||||||||||||||||||||| ||
seq2  GTGTAACTGCGAAGGGTGCATGCACACAGGTGTGTGTTTCTTATTGGTTC  197

seq1  TTTCACTTGTATACTTTGCTTTATATTTTTGTGGGTTTTATCTTGCTGAC  242
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTCACTTGTATACTTTGC-TTATATTTTTGTGGGTTTTATCTTGCTGAC  246

seq1  ATTGTTTGTGTTTCTAGTTTTTGTTTTGAAACAAAAAAGAAAATGCATGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGTGTTTCTAGTTTTTGTTTTGAAACAAAAAAGAAAATGCATGA  296

seq1  GCTTGGGTGGGTAGGGAGGTGAGGGATATCAAAGGGATTACACAG-AAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTGGGTGGGTAGGGAGGTGAGGGATATCAAAGGGATTACACAGAAAAA  346

seq1  AAGTGTGATTAGAACATATTGCATAAAAAATTCAATTAGGATTTTAAAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGATTAGAACATATTGCATAAAAAATTCAATTAGGATTTTAAAAA  396

seq1  AGGAAAAAGATGAACCGGATTTTTTTATGCAGTCATTGTGACCAGATTCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGATGAACCGGATTTTTTTATGCAGTCATTGTGACCAGATTCT  446

seq1  TTCCCCTTCCCCAAATTCTCCTTGATGTTTTTTTCTCCCTTTCTCCCTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCCCCAAATTCTCCTTGATGTTTTTTTCTCCCTTTCTCCCTTC  496

seq1  TTCTCTCCTTCTGTCTCACTCAAAAAGAATAAAAACAAGCATAAAGAACT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTTCTGTCTCACTCAAAAAGAATAAAAACAAGCATAAAGAACT  546

seq1  TGATGATAGATTTCATTTAATAAATGTAAGGAAGGCAAAATGAACTGCAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAGATTTCATTTAATAAATGTAAGGAAGGCAAAATGAACTGCAA  596

seq1  ACTTTAAATTAGTTAATTATAAATGATAATTATAATTTTGTTACATTGTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATTAGTTAATTATAAATGATAATTATAATTTTGTTACATTGTG  646

seq1  GTTCTTAAGATACTTCTGTATTGCACATACACAGGATGATTGTACAGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAAGATACTTCTGTATTGCACATACACAGGATGATTGTACAGCAG  696

seq1  AGCCATGACAATAATAGGCAGGGGTTCTTGAGTCTGCTAGGTAAGCACTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGACAATAATAGGCAGGGGTTCTTGAGTCTGCTAGGTAAGCACTC  746

seq1  CTCCATTCAACTAATTTGGCCTTTGCCACATTTGTTCATAATATCACTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCAACTAATTTGGCCTTTGCCACATTTGTTCATAATATCACTTC  796

seq1  ATTTTTTTTTTTATTTTATGATACAGGAGTTCTCTGTGTAGCCCTGGCTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTTATTTTATGATACAGGAGTTCTCTGTGTAGCCCTGGCTG  846

seq1  TCCTGGAACTCAATCTGTAGACCAGGCTGGCCTCGAGCTCATTGATCTGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCAATCTGTAGACCAGGCTGGCCTCGAGCTCATTGATCTGC  896

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACACCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACACCC  946

seq1  GGCTTTTACTTTGATATTTTAAGTATCCACTGTTTTGTACATGTAAGAGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTACTTTGATATTTTAAGTATCCACTGTTTTGTACATGTAAGAGC  996

seq1  TCCAAACTTTCTCCCTATTCATTCTCATATTTCTGAGTTATCCAATCATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTTTCTCCCTATTCATTCTCATATTTCTGAGTTATCCAATCATT  1046

seq1  CCTTCTAACATCAACATTCTGTATGTGAGTTCAGGCACATGTATGCCCCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAACATCAACATTCTGTATGTGAGTTCAGGCACATGTATGCCCCA  1096

seq1  ATCCTCTTGTGGAGGACAAGAGACAGCACTTGGGAATCAGTTCTTTGATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTGTGGAGGACAAGAGACAGCACTTGGGAATCAGTTCTTTGATT  1146

seq1  TAATTATGAATTC  1154
      |||||||||||||
seq2  TAATTATGAATTC  1159


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