BAC Information

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BAC

Clone NameB6Ng01-263D09
Chromosome4 (Build37)
Map Location 26,819,637 - 26,820,797
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263D09.bB6Ng01-263D09.g
ACCGA067436GA067437
length1,2061,147
definitionB6Ng01-263D09.b B6Ng01-263D09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtattggatcttg
tcgaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattcgtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaattagttg
catagactaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacctgtctg
gtcctgggcttttttttttggctgggagactattaataactgcttctatt
tctttaggggatatgggactgtttagaaggtcaacttgatcctgattcaa
ccttggtacctggtatctttccagaaatttgtccatttcgtccagatttt
ccagttttgtcgagtatagccttttgtagaaggatctgatggtgttttgg
atttcttcaggatctgttgttatgtctcccttttcatttctgattttgtt
gattaggattttgtccctttgccctttagtgagtctagctaagggtttat
ctatcttgttgattttctcaaagaaccaactcctcgtttggttaattctt
tgaatagttcttcttgtttccacttggttaatttcacccctgagtttgat
tatttcctgccgtctactcctcttgggtgaatttgcttcctctttttcta
gagcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttc
tttttggaggtactcagagctatgagttccctcttagaattctttcattg
tgtcccaagtttgggtacgttgtgctcattttcataactctaaaagtctt
tatttctttcttatcttcctgacagtatcatggaagagtgttgttcagtt
tcaaggtgaatgtggcctttcatattatgtgtattgaagaatcagctagc
atgtggctctgatgatacatgggaccaatttccacatattttgtacatcc
tgttta

gaattccctttcactattgttttacttattaaacttaatatatatttgaa
tacttacatttactgactgcaaagaatgagcaaattcattatgaaatact
atactcctatactcatcaggaagtagatgattactctctatagtcattac
tagtggatgtaatttttttctgtttgtttctttcagaattttagctaagc
ttcaactgtcagtggagaagagcttctctgtgtttactgagagacaaatg
ctttcccataataagagaagtttccctatttatctagaaaattaccctct
atatacagaatcatttccctgtctagagaaaagtcttcttctgtatgtct
agagatgaacctttgtcttccaaatagagaatttctgtgtctgtccaaag
gtcttctttttattcagaaaaggactttcctttatcaagcaactaataca
aacaaggaaagactattatataattttcaaactacataattttggaaagt
gtgaaaaataagtgatcaatcttaaaatcatatacataaaagaaatctaa
tatggaataaatattctatatgtatacacattcataatttactcagataa
tttgatagaaagtatacatgaaaattaaagaaaatgaggccagaggcatt
taatttgagagcaaggtagctttgtgcagagggttcaagagagaaaagag
aaaatgggaaaatgtatatcaatttcaataaaaatagaataatgaaaagt
aaaagttaatcatagggaataaacttggacatattgtataaatcaaattt
gtggagtgacgatgacttaaactatgcaatgacagaaaacaattattttc
tttttcctttaaaccactgctctttgtttgagttcccttaagtggctcct
ttcctgcaatcttccattaatgacatcatcacacaagatccacaatctcc
tcttaacatttccccctttgggcccttaaatatgatgcttactcactttc
tgccatcatgccttacttttcattttgaagaaaatctgtgctttattcta
tgacttgtttctccctgtatttcactagaatattagctttactgtacctt
tgtgtataagatgccatgaatgtgtgcctcgtaggtaatgattcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_26819637_26820797
seq2: B6Ng01-263D09.g_65_1211

seq1  GAATTCCCTTTCACTATTGTTTTACTTATTAAACTTAATATATATTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCACTATTGTTTTACTTATTAAACTTAATATATATTTGAA  50

seq1  TACTTACATTTACTGACTGCAAAGAATGAGCAAATTCATTATGAAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATTTACTGACTGCAAAGAATGAGCAAATTCATTATGAAATACT  100

seq1  ATACTCCTATACTCATCAGGAAGTAGATGATTACTCTCTATAGTCATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTATACTCATCAGGAAGTAGATGATTACTCTCTATAGTCATTAC  150

seq1  TAGTGGATGTAATTTTTTTCTGTTTGTTTCTTTCAGAATTTTAGCTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGATGTAATTTTTTTCTGTTTGTTTCTTTCAGAATTTTAGCTAAGC  200

seq1  TTCAACTGTCAGTGGAGAAGAGCTTCTCTGTGTTTACTGAGAGACAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGTCAGTGGAGAAGAGCTTCTCTGTGTTTACTGAGAGACAAATG  250

seq1  CTTTCCCATAATAAGAGAAGTTTCCCTATTTATCTAGAAAATTACCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCATAATAAGAGAAGTTTCCCTATTTATCTAGAAAATTACCCTCT  300

seq1  ATATACAGAATCATTTCCCTGTCTAGAGAAAAGTCTTCTTCTGTATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGAATCATTTCCCTGTCTAGAGAAAAGTCTTCTTCTGTATGTCT  350

seq1  AGAGATGAACCTTTGTCTTCCAAATAGAGAATTTCTGTGTCTGTCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAACCTTTGTCTTCCAAATAGAGAATTTCTGTGTCTGTCCAAAG  400

seq1  GTCTTCTTTTTATTCAGAAAAGGACTTTCCTTTATCAAGCAACTAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTTTATTCAGAAAAGGACTTTCCTTTATCAAGCAACTAATACA  450

seq1  AACAAGGAAAGACTATTATATAATTTTCAAACTACATAATTTTGGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAAAGACTATTATATAATTTTCAAACTACATAATTTTGGAAAGT  500

seq1  GTGAAAAATAAGTGATCAATCTTAAAATCATATACATAAAAGAAATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATAAGTGATCAATCTTAAAATCATATACATAAAAGAAATCTAA  550

seq1  TATGGAATAAATATTCTATATGTATACACATTCATAATTTACTCAGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATAAATATTCTATATGTATACACATTCATAATTTACTCAGATAA  600

seq1  TTTGATAGAAAGTATACATGAAAATTAAAGAAAATGAGGCCAGAGGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGAAAGTATACATGAAAATTAAAGAAAATGAGGCCAGAGGCATT  650

seq1  TAATTTGAGAGCAAGGTAGCTTTGTGCAGAGGGTTCAAGAGAGAAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGAGAGCAAGGTAGCTTTGTGCAGAGGGTTCAAGAGAGAAAAGAG  700

seq1  AAAATGGGAAAATGTATATCAATTTCAATAAAAATAGAATAATGAAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAAAATGTATATCAATTTCAATAAAAATAGAATAATGAAAAGT  750

seq1  AAAAGTTAATCATAGGGAATAAACTTGGACATATTGTATAAATCAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAATCATAGGGAATAAACTTGGACATATTGTATAAATCAAATTT  800

seq1  GTGGAGTGACGATGACTTAAACTATGCAATGACAGAAAACAATTATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGACGATGACTTAAACTATGCAATGACAGAAAACAATTATTTTC  850

seq1  TTTTTCCTTTAAACCACTGCTCTTTGTTTGAGTTCCCTTAAGTGGCTCC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTCCTTTAAACCACTGCTCTTTGTTTGAGTTCCCTTAAGTGGCTCCT  900

seq1  TTCCTGCAATCTTCCATTAATGACATCATCACACAAGATCCACAATCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAATCTTCCATTAATGACATCATCACACAAGATCCACAATCTCC  950

seq1  TCTTAACATTTCCCCCTTTGGCCCTTAAAATATGATGCTTACTCACTTTC  999
      ||||||||||||||||||||| || | |||||||||||||||||||||||
seq2  TCTTAACATTTCCCCCTTTGGGCCCTTAAATATGATGCTTACTCACTTTC  1000

seq1  TGCCATCCAATGCCTTACTTTTCATTTTGAAGAAAATCTGTGGCTTTATT  1049
      |||||||  |||||||||||||||||||||||||||||||| ||||||||
seq2  TGCCATC--ATGCCTTACTTTTCATTTTGAAGAAAATCTGT-GCTTTATT  1047

seq1  CTAATGACTTGTTTCTCCCTGTATTTCACTAGAATATTAAGCTTTACTGT  1099
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CT-ATGACTTGTTTCTCCCTGTATTTCACTAGAATATT-AGCTTTACTGT  1095

seq1  AACCCTTTGTGTATAAGATGCCAATGAATGTGTGCCCTTTCTGTAGTGTA  1149
      |  ||||||||||||||||||| |||||||||||||   || ||||    
seq2  A--CCTTTGTGTATAAGATGCC-ATGAATGTGTGCC---TC-GTAG---G  1135

seq1  TAATGATTCATG  1161
      ||||||||||||
seq2  TAATGATTCATG  1147


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