BAC Information

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BAC

Clone NameB6Ng01-263E11
Chromosome4 (Build37)
Map Location 132,788,840 - 132,914,114
singlet/doubletdoublet
Overlap geneFcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
Upstream geneGmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2
Downstream geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263E11.bB6Ng01-263E11.g
ACCGA067488GA067489
length1891,031
definitionB6Ng01-263E11.b B6Ng01-263E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,913,926 - 132,914,114)(132,788,840 - 132,789,881)
sequence
ttacttcatttccaactggagatggtcaggaaagttgttatgagtcaaat
gatgtggggagttggagtttttttcaatcttcttggggtgttgtgtgtac
gcactctctttctatatatgtgtgcatgcatttatgcctctctttctctc
tctctgtgattgtgtctgtatatgcattcgtgtgtgtgt
gaattccagggctaccttggctccctaggcaagatggatcccaagggaga
gtctaccctctgactttactttttgcacagactagggctgggccctctca
gctacttagggctgtaagtgccctcggaggagccaacattggaaggagta
gtaagaatttggaggagcgggggctggagaggtggcccagtggttaagag
cactggctgctcttccagaggtcctgagttcaattcccagcaaccacatg
gtggctcacagccatctgtattgagatctgacgccctcttctggtgtgtc
tgaagacagctagagtgtgctcatatacataaaataaataaatcttaaaa
ataataatttggagaagggctggctctgccccatgctggctcatggggcc
tcccttagggtactcagacctcagagtcagttgacacctggtcctttatc
tctgggcaggacatcagccacctgctctgccgctaagaggctaaggaggc
gtccacgggagtgaggaacttggaatcaggccagacgggggtggtggaag
tttccaggcatgtaagcctctcctcatagctctatagtgcgcacctcttc
cccaggtcccaggatctgagaggactgctcggtcccttacttgttccaga
atctgggtggaggcttttgggaaacaacttgggggcctttctcaatccac
caccaccccctttcccaggtctcaagaacttttccagtctttcccatttt
ttggacactccagggggtaagaaaaaaaaagaggcaacaggcaaagcccg
gtggtgacttctctctaactccctagggggagccagagtccactgaagcc
aggcatacctgacaggacagctcctacagggccagaagtctgagaggctt
catggagagtgttatttggaggaaagtaaagctctgtgaacatctctagg
tcttggtgagtgcagagtacttgcgggtagaataaaggcgagcagagatg
tggagagaggatagcttagaagtaagctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132913926_132914114
seq2: B6Ng01-263E11.b_49_237 (reverse)

seq1  ACACACACACGAATGCATATACAGACACAATCACAGAGAGAGAGAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGAATGCATATACAGACACAATCACAGAGAGAGAGAAAGAG  50

seq1  AGGCATAAATGCATGCACACATATATAGAAAGAGAGTGCGTACACACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAATGCATGCACACATATATAGAAAGAGAGTGCGTACACACAAC  100

seq1  ACCCCAAGAAGATTGAAAAAAACTCCAACTCCCCACATCATTTGACTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGAAGATTGAAAAAAACTCCAACTCCCCACATCATTTGACTCAT  150

seq1  AACAACTTTCCTGACCATCTCCAGTTGGAAATGAAGTAA  189
      |||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTTCCTGACCATCTCCAGTTGGAAATGAAGTAA  189

seq1: chr4_132788840_132789881
seq2: B6Ng01-263E11.g_68_1098

seq1  GAATTCCAGGGCTACCTTGGCTCCCTAGGCAAGATGGATCCCAAGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTACCTTGGCTCCCTAGGCAAGATGGATCCCAAGGGAGA  50

seq1  GTCTACCCTCTGACTTTACTTTTTGCACAGACTAGGGCTGGGCCCTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCCTCTGACTTTACTTTTTGCACAGACTAGGGCTGGGCCCTCTCA  100

seq1  GCTACTTAGGGCTGTAAGTGCCCTCGGAGGAGCCAACATTGGAAGGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTAGGGCTGTAAGTGCCCTCGGAGGAGCCAACATTGGAAGGAGTA  150

seq1  GTAAGAATTTGGAGGAGCGGGGGCTGGAGAGGTGGCCCAGTGGTTAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATTTGGAGGAGCGGGGGCTGGAGAGGTGGCCCAGTGGTTAAGAG  200

seq1  CACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATG  250

seq1  GTGGCTCACAGCCATCTGTATTGAGATCTGACGCCCTCTTCTGGTGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAGCCATCTGTATTGAGATCTGACGCCCTCTTCTGGTGTGTC  300

seq1  TGAAGACAGCTAGAGTGTGCTCATATACATAAAATAAATAAATCTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTAGAGTGTGCTCATATACATAAAATAAATAAATCTTAAAA  350

seq1  ATAATAATTTGGAGAAGGGCTGGCTCTGCCCCATGCTGGCTCATGGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTTGGAGAAGGGCTGGCTCTGCCCCATGCTGGCTCATGGGGCC  400

seq1  TCCCTTAGGGTACTCAGACCTCAGAGTCAGTTGACACCTGGTCCTTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAGGGTACTCAGACCTCAGAGTCAGTTGACACCTGGTCCTTTATC  450

seq1  TCTGGGCAGGACATCAGCCACCTGCTCTGCCGCTAAGAGGCTAAGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCAGGACATCAGCCACCTGCTCTGCCGCTAAGAGGCTAAGGAGGC  500

seq1  GTCCACGGGAGTGAGGAACTTGGAATCAGGCCAGACGGGGGTGGTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGGGAGTGAGGAACTTGGAATCAGGCCAGACGGGGGTGGTGGAAG  550

seq1  TTTCCAGGCATGTAAGCCTCTCCTCATAGCTCTATAGTGCGCACCTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGCATGTAAGCCTCTCCTCATAGCTCTATAGTGCGCACCTCTTC  600

seq1  CCCAGGTCCCAGGATCTGAGAGGACTGCTCGGTCCCTTACTTGTTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCCCAGGATCTGAGAGGACTGCTCGGTCCCTTACTTGTTCCAGA  650

seq1  ATCTGGGTGGAGGCTTTTGGGAAACAACTTGGGGGCCTTTCTCAATCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTGGAGGCTTTTGGGAAACAACTTGGGGGCCTTTCTCAATCCAC  700

seq1  CACCACCCCCTTTCCCAGGTCTCAAGAACTTTTCCAGTCTTTCCCATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCCCTTTCCCAGGTCTCAAGAACTTTTCCAGTCTTTCCCATTTT  750

seq1  TTGGACACTCCAGGGGGTAAGAAAAAAAAAGAGGCAACAGGCAAAGCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTCCAGGGGGTAAGAAAAAAAAAGAGGCAACAGGCAAAGCCCG  800

seq1  GTGGTGACTTCTCTCTAACTCCCTAGGGGGAGCCAGAGTCCACTGAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACTTCTCTCTAACTCCCTAGGGGGAGCCAGAGTCCACTGAAGCC  850

seq1  AGGCATACCTGACAGGACAGCTCCTACAGGGCCAGAAGTCTGAGAAGGCT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGCATACCTGACAGGACAGCTCCTACAGGGCCAGAAGTCTGAG-AGGCT  899

seq1  TCATGGAGGAGGTGTTATTTGGAGGAAAGTAAAGGCTCTGTGAACATTCT  950
      ||||||||   |||||||||||||||||||||| |||||||||||| |||
seq2  TCATGGAG--AGTGTTATTTGGAGGAAAGTAAA-GCTCTGTGAACA-TCT  945

seq1  CTAGGTCT--GTGAGTGCAGAGTACTTTGCGGGTAGAAATAAAGGCGAGC  998
      ||||||||  ||||||||||||||| |||||||||| |||||||||||||
seq2  CTAGGTCTTGGTGAGTGCAGAGTAC-TTGCGGGTAG-AATAAAGGCGAGC  993

seq1  AGGAGGAGGTG-GGAGAGAGGAAAGGCTAAGGAAAGTAAGCTAGG  1042
      |    ||| || |||||||||| | ||| ||  ||||||||||||
seq2  A----GAGATGTGGAGAGAGGATA-GCTTAG--AAGTAAGCTAGG  1031