BAC Information

Click to search

BAC

Clone NameB6Ng01-264F12
Chromosome4 (Build37)
Map Location 110,567,707 - 110,568,830
singlet/doubletsinglet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264F12.bB6Ng01-264F12.g
ACCGA068272GA068273
length1,1981,122
definitionB6Ng01-264F12.b B6Ng01-264F12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaccttcacagaagacctagtaccaagcaatacctctcaaact
attccacaaaacagaaatagaaggaacactatctaattcgttctataaag
ctgcagttgctcatacccaaatcacacaaagatgcaacaaagaaagagaa
cttcagaccaatttcacttatgaatatcaatgaaaaattactcctagcaa
accaaatccatgaacagatcaaaatgaccattcaacatgatgaagtaggc
ttcaccttcaccccagggatgtagggatggttcaacatacagaaatccat
caacatagtccattatataaacgaagtaaaaaaaaaaaacccaatcacac
gtttatctcattagatcttagaaaagcctttgacaaaatacaacacccct
catggtaaaagccatagccaacatcaaattaaatggagaaaaacttcaag
caatcccactaaaatgcaatcccactaaaatcagggacaagacaaggcta
tccactttctccctatttattctatacagtactcgaaattctagccagag
taattagacaataaaaggaggtcaaagggatacaagttggaaaggaagaa
gtcaaagtatcactatttgtgtatgatatgatagtaaacgtgtgattctt
agtcatcagggaaatgcaaatcaaaacaaccctgagattctacctcatac
caatcagaatggcaaagctcaaaaattcaggtgacagcacatgttggcaa
ggatgtgtaggaaaaagaacactcctccattgctggtggggttgcaaaaa
aggtacaattactttggaaatcaatcttgcagatactcagaaatttggaa
atagttctgtctgaagacccagctataccactcctgggcatatacccaaa
agatgctctaccatattccaaggtcatgtggtccactatatttgtagcag
ccttttttatatagccagaagctaggaacaacccagatgtccctcacaga
gatggataacagaaaaatatggtacttttacacaatgattactacttagc
aataaaaatgctcacaaatttgcagcaaatgcatgcacctagaaaatatc
attcttgaagtgagtaactagacccaaatacatacatgcatgactactga
tactggctactagccaagttcagaaatgcatggataccattccacgat
gaattcatggtactggtacagtggcagacaggtggatcaatggaatagaa
ttgaagacccagaaatgaacccacacgcctatggtcacttggaatttgac
aagctaaaaccatccagtaaaagacaagactgcattttcaacaaatggtg
ctagttcaactggtggtcaacatgtaaaagaatgaaaattgatccattta
gacattatattcagaactaagaagaggttagaaaaaaacatttagatccc
cataattatatattaaaaaaattctatttctgtgaacataaaatgtcaat
gcaaattaagaaaacaatacaaaatttacaagcagacccaaaagagcagg
caggattctgtgtgttgcttcaattacacagtagtaattaagattagaca
ttcaaaacacccactttaaaaatataacatccttaatgtagggtaatata
gcatggaacattgtagagatgtcagcttcacctaatattctaattacctt
atatgttttatcttataaaggttttcatgtagaaataatttaatttcact
ttctaattctttatttaaaattaaaatcatattacaaaatagttctttag
ctgtttaaattacaacagtatattctcttgcattttcagatatgcaattc
ctctgccattgagcaaatgaaagaaacagattatacaaatttttagagag
ctggctagtcagccttgtagaatgatgaaaaagtgtattaaaacattatg
gaagttcaggaataaacctcacctttcacaaaaatgtatgtgtctgctac
tttttaagtatgcaacactcttctggacaccttggcagagctacgtaatc
ttctaaaagacacttcatcttcgttttcctgtttccatagtagtaaagct
atgtgtcttaattgcttctttattgctatgataaaatacctccccttatt
ccttcttctcttcttcccttgtcttgtagcatgaagactttagattggcc
ttaattttccagaagaatgagatcttcctcatggtggggaggtttgacag
caggcatggtgctcggagtagatctagagctccacatactcatcccccaa
agtagagcagagtgaacatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110567707_110568830
seq2: B6Ng01-264F12.g_63_1184 (reverse)

seq1  CCTATGTTCACTCTGCTTCCTACTTTGGGGGATTGAGTATGT-GAGCTCT  49
      |||||||||||||||||  ||||||||||||| ||||||||| |||||| 
seq2  CCTATGTTCACTCTGCT--CTACTTTGGGGGA-TGAGTATGTGGAGCTC-  46

seq1  TAGATTCTTACT-CGAGCACCATGCCTGCTGTCAAACCTTCCCACCATGA  98
      |||||   |||| |||||||||||||||||||||||||| ||||||||||
seq2  TAGAT--CTACTCCGAGCACCATGCCTGCTGTCAAACCTCCCCACCATGA  94

seq1  -GAAGATCTCATTCTTCTGGAAAATTAA-GCCAATCTAAAGTCTTCATGC  146
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAGATCTCATTCTTCTGGAAAATTAAGGCCAATCTAAAGTCTTCATGC  144

seq1  TACAAGACAA-GGAAGAAGAGAAGAAGGAATAAGGGGAGGTATTTTATCA  195
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACAAGACAAGGGAAGAAGAGAAGAAGGAATAAGGGGAGGTATTTTATCA  194

seq1  TAGCAATAAAGAAGCAATTAAGACACATAGCTTTACTACTATGGAAACAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATAAAGAAGCAATTAAGACACATAGCTTTACTACTATGGAAACAG  244

seq1  GAAAACGAAGATGAAGTGTCTTTTAGAAGATTACGTAGCTCTGCCAAGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGAAGATGAAGTGTCTTTTAGAAGATTACGTAGCTCTGCCAAGGT  294

seq1  GTCCAGAAGAGTGTTGCATACTTAAAAAGTAGCAGACACATACATTTTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAAGAGTGTTGCATACTTAAAAAGTAGCAGACACATACATTTTTG  344

seq1  TGAAAGGTGAGGTTTATTCCTGAACTTCCATAATGTTTTAATACACTTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTGAGGTTTATTCCTGAACTTCCATAATGTTTTAATACACTTTT  394

seq1  TCATCATTCTACAAGGCTGACTAGCCAGCTCTCTAAAAATTTGTATAATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTCTACAAGGCTGACTAGCCAGCTCTCTAAAAATTTGTATAATC  444

seq1  TGTTTTCTTTCATTTGCTCAATGGCAGAGGAATTGCATATCTGAAAATGC  495
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTCTTTCATTTGCTCAATGGCAGAGGAATTGCATATCTGAAAATGC  493

seq1  AAGAGAATATACTGTTGTAATTTAAACAGCTAAAGAACTATTTTGTAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATATACTGTTGTAATTTAAACAGCTAAAGAACTATTTTGTAATA  543

seq1  TGATTTTAATTTTAAATAAAGAATTAGAAAGTGAAATTAAATTATTTCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAATTTTAAATAAAGAATTAGAAAGTGAAATTAAATTATTTCTA  593

seq1  CATGAAAACCTTTATAAGATAAAACATATAAGGTAATTAGAATATTAGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACCTTTATAAGATAAAACATATAAGGTAATTAGAATATTAGGT  643

seq1  GAAGCTGACATCTCTACAATGTTCCATGCTATATTACCCTACATTAAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGACATCTCTACAATGTTCCATGCTATATTACCCTACATTAAGGA  693

seq1  TGTTATATTTTTAAAGTGGGTGTTTTGAATGTCTAATCTTAATTACTACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTTTTAAAGTGGGTGTTTTGAATGTCTAATCTTAATTACTACT  743

seq1  GTGTAATTGAAGCAACACACAGAATCCTGCCTGCTCTTTTGGGTCTGCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTGAAGCAACACACAGAATCCTGCCTGCTCTTTTGGGTCTGCTT  793

seq1  GTAAATTTTGTATTGTTTTCTTAATTTGCATTGACATTTTATGTTCACAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTTGTATTGTTTTCTTAATTTGCATTGACATTTTATGTTCACAG  843

seq1  AAATAGAATTTTTTTAATATATAATTATGGGGATCTAAATGTTTTTTTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATTTTTTTAATATATAATTATGGGGATCTAAATGTTTTTTTCT  893

seq1  AACCTCTTCTTAGTTCTGAATATAATGTCTAAATGGATCAATTTTCATTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTCTTAGTTCTGAATATAATGTCTAAATGGATCAATTTTCATTC  943

seq1  TTTTACATGTTGACCACCAGTTGAACTAGCACCATTTGTTGAAAATGCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATGTTGACCACCAGTTGAACTAGCACCATTTGTTGAAAATGCAG  993

seq1  TCTTGTCTTTTACTGGATGGTTTTAGCTTGTCAAATTCCAAGTGACCATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTTTTACTGGATGGTTTTAGCTTGTCAAATTCCAAGTGACCATA  1043

seq1  GGCGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCCACCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCCACCT  1093

seq1  GTCTGCCACTGTACCAGTACCATGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  GTCTGCCACTGTACCAGTACCATGAATTC  1122