BAC Information

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BAC

Clone NameB6Ng01-264J04
Chromosome4 (Build37)
Map Location 6,441,311 - 6,556,201
singlet/doubletdoublet
Overlap geneLOC100039414
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397
Downstream geneTox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264J04.bB6Ng01-264J04.g
ACCGA068444GA068445
length1,172996
definitionB6Ng01-264J04.b B6Ng01-264J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,441,311 - 6,442,494)(6,555,205 - 6,556,201)
sequence
gaattcagtgaaaatctgtttctgttgtttgagtttgcgctactttgttg
tggtggcaggagcagtccaagatccgtgcttactattatttttatggtct
tggctgttattttgttatttgtatcaccctgtcatacgtgcccacagtgc
tggcagggtccttcagtacaatattcagttggctataaactgcttcctac
acctggcctcctgcccatgcttggaaactattatcattttaatcctcatt
gcatagccttcctattagatcctgatgtatattaaaggattatgccattt
taagctaaatcttgctgataataggcattgcgcactggagtagaaatgga
acattaattgcaagcattgagaatcttaggagaagtttttaatgcgaaat
gcaagttttaagagtttgaggcatcaaagcttgatcagatgggagactcc
aatgctcacacaagaaggaccacgccactggaagagttctggcagatgga
agggctgagaaactctgtgtacactcattctatttaaaatctcctggttt
gtttagcttcactaattgaatcaatatttcttgtgctctctttctcttta
gaaaaagcaaaaacacagcacaaacagaatgccttaggcatttctgttgt
gttttgcctttggaagatttttttttttttagtgttagaattccctcagt
caatccgcaattctttattaagttttaatgtggtttaaactctccatctg
taggcaatttatcctctctccagtctggcagcagggccaatcattccctg
tagtgtggttatgagctccctctggtggtaaaaactataatgacgcattc
atcggcagcatctgcatccgtttcatctctagtgatgtctgagacctgga
acatcaaagcaaagcaatacaatgggccgcagacaagtttcagcttcaca
gtcaggccatttactcaaatgctgcctgtttggagaaaggacctcatgcc
tctgctaagagagcctgagagatgacttgtatcgtatggtggatattgtt
cgctagtttatctaaatgatgagatggaggatgttagttgctgtttatag
tgtgctcatactaagtcagtctcgtacagacattggacttcagcactcat
gagtcttccgtagactttggtg

gaattcatttctgaccatgtgttcatttaaaacactagtgtttgatatct
gtaaattatatttttcaaatagttaaagacagaatgagacagcaattaaa
tttattgtaatttctttaatccatttcatgtataaacacatctttgcaat
tcatgtactattttgttctacattcacaggttagttggtattaaattaat
tcttacatccacagaaacaaactttaggaagatttcttgctgtgcctgga
atttctcataaaattccatgatttcaggggcattcagagaagtgccgaac
aatgtcagagaaggttgagtcttccaggatcattcacagaagtactcagt
gatatcagaaatggttgagtcttcaatgtattaaagccatgttcacagct
aactaactcctgagtaactcaatagcttctactttgacattttgaagcaa
attaaccatttttactttgcctacttataaatatggttaatagcaggtta
gttaacctatccattgcttttcttcaggcccatgagtcactaactatagt
aacaatgtaggaggaatctctatgggagcctgtccatatctgaccatagc
tgtattaaataaataagtgtgtctgggtaacaagcactgtggcttctaca
gagcataggtttctgttcttttggtaacatgggttcttccttttgaaaca
agatttcattactgaactagaacttgatatgtccatgcagatcttgaact
tacagtgatttgcctgccactgtcttccaaggactggaatagaagtgtat
cattccaggaaccctggcattttgcttttatctatctatctatctatcta
tctatctatctatctatctaccaccaatctatgtctctcaatttctgtgt
ttctctctgtctctctgtctccctgtctctgtctctctgtctctgtctct
atgtgtatatgtatgtgtgtatatgtgtatcttgggtgggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6441311_6442494
seq2: B6Ng01-264J04.b_45_1216

seq1  GAATTCAGTGAAAATCTGTTTCTGTTGTTTGAGTTTGCGCTACTTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAAATCTGTTTCTGTTGTTTGAGTTTGCGCTACTTTGTTG  50

seq1  TGGTGGCAGGAGCAGTCCAAGATCCGTGCTTACTATTATTTTTATGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGGAGCAGTCCAAGATCCGTGCTTACTATTATTTTTATGGTCT  100

seq1  TGGCTGTTATTTTGTTATTTGTATCACCCTGTCATACGTGCCCACAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTATTTTGTTATTTGTATCACCCTGTCATACGTGCCCACAGTGC  150

seq1  TGGCAGGGTCCTTCAGTACAATATTCAGTTGGCTATAAACTGCTTCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGTCCTTCAGTACAATATTCAGTTGGCTATAAACTGCTTCCTAC  200

seq1  ACCTGGCCTCCTGCCCATGCTTGGAAACTATTATCATTTTAATCCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCCTCCTGCCCATGCTTGGAAACTATTATCATTTTAATCCTCATT  250

seq1  GCATAGCCTTCCTATTAGATCCTGATGTATATTAAAGGATTATGCCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCTTCCTATTAGATCCTGATGTATATTAAAGGATTATGCCATTT  300

seq1  TAAGCTAAATCTTGCTGATAATAGGCATTGCGCACTGGAGTAGAAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAATCTTGCTGATAATAGGCATTGCGCACTGGAGTAGAAATGGA  350

seq1  ACATTAATTGCAAGCATTGAGAATCTTAGGAGAAGTTTTTAATGCGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATTGCAAGCATTGAGAATCTTAGGAGAAGTTTTTAATGCGAAAT  400

seq1  GCAAGTTTTAAGAGTTTGAGGCATCAAAGCTTGATCAGATGGGAGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTTAAGAGTTTGAGGCATCAAAGCTTGATCAGATGGGAGACTCC  450

seq1  AATGCTCACACAAGAAGGACCACGCCACTGGAAGAGTTCTGGCAGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCACACAAGAAGGACCACGCCACTGGAAGAGTTCTGGCAGATGGA  500

seq1  AGGGCTGAGAAACTCTGTGTACACTCATTCTATTTAAAATCTCCTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGAAACTCTGTGTACACTCATTCTATTTAAAATCTCCTGGTTT  550

seq1  GTTTAGCTTCACTAATTGAATCAATATTTCTTGTGCTCTCTTTCTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCTTCACTAATTGAATCAATATTTCTTGTGCTCTCTTTCTCTTTA  600

seq1  GAAAAAGCAAAAACACAGCACAAACAGAATGCCTTAGGCATTTCTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCAAAAACACAGCACAAACAGAATGCCTTAGGCATTTCTGTTGT  650

seq1  GTTTTGCCTTTGGAAGATTTTTTTTTTTTTAGTGTTAGAATTCCCTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTTTGGAAGATTTTTTTTTTTTTAGTGTTAGAATTCCCTCAGT  700

seq1  CAATCCGCAATTCTTTATTAAGTTTTAATGTGGTTTAAACTCTCCATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCGCAATTCTTTATTAAGTTTTAATGTGGTTTAAACTCTCCATCTG  750

seq1  TAGGCAATTTATCCTCTCTCCAGTCTGGCAGCAGGGCCAATCATTCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATTTATCCTCTCTCCAGTCTGGCAGCAGGGCCAATCATTCCCTG  800

seq1  TAGTGTGGTTATGAGCTCCCTCTGGTGGTAAAAACTATAATGACGCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGTTATGAGCTCCCTCTGGTGGTAAAAACTATAATGACGCATTC  850

seq1  ATCGGCAGCATCTGCATCCGTTTCATCTCTAGTGATGTCTGAGACCTGG-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCGGCAGCATCTGCATCCGTTTCATCTCTAGTGATGTCTGAGACCTGGA  900

seq1  ACATCAAAGCAAAGCAATACAAT-GGCCGCAGACAAG-TTCAGCTTCACA  947
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  ACATCAAAGCAAAGCAATACAATGGGCCGCAGACAAGTTTCAGCTTCACA  950

seq1  GTCAAGGCCA-TTACTCAAATGCTGCCTG-TTGGAG-AAGGACCTCATGC  994
      ||| |||||| |||||||||||||||||| |||||| |||||||||||||
seq2  GTC-AGGCCATTTACTCAAATGCTGCCTGTTTGGAGAAAGGACCTCATGC  999

seq1  CTCTGCTAAGGAGAGCCTGAGAGATGAATTTTGTATTTGTATTGTGGATA  1044
      ||||||||| |||||||||||||||||   ||||| | |||| |||||||
seq2  CTCTGCTAA-GAGAGCCTGAGAGATGA--CTTGTA-TCGTATGGTGGATA  1045

seq1  -TGTTCGGCTAGTTTTAATCTAAAATGATGAGAATGAAAGATGTAGGTTT  1093
       ||||| ||||||||  |||| |||||||||| ||| | |||||  | ||
seq2  TTGTTC-GCTAGTTT--ATCT-AAATGATGAG-ATGGAGGATGTTAG-TT  1089

seq1  GGTG-TTATAGTGTGCTCATATTAAGTCATTCTCGAAAACAGGGACATTG  1142
      | || |||||||||||||||| ||||||| ||||| | |    |||||||
seq2  GCTGTTTATAGTGTGCTCATACTAAGTCAGTCTCGTACA----GACATTG  1135

seq1  TGACTTTCAGGGACA-TCAGTAGTTCCTTTC-TAGACTTTGGGG  1184
       ||| |||||   || |||  |||  ||| | |||||||||| |
seq2  -GAC-TTCAG---CACTCATGAGT--CTTCCGTAGACTTTGGTG  1172


seq1: chr4_6555205_6556201
seq2: B6Ng01-264J04.g_67_1062 (reverse)

seq1  CACACCCCCACACAAAGATACACATATACACACATACATATACACATAGA  50
      ||| ||||||| | ||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCCAC-CCAAGATACACATATACACACATACATATACACATAGA  49

seq1  GACAGAGACAGAGAGACAGAGACAGGGAGACAGAGAGACAGAGAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACAGAGAGACAGAGACAGGGAGACAGAGAGACAGAGAGAAACA  99

seq1  CAGAAATTGAGAGACATAGATTGGTGGTAGATAGATAGATAGATAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTGAGAGACATAGATTGGTGGTAGATAGATAGATAGATAGATAG  149

seq1  ATAGATAGATAGATAGATAAAAGCAAAATGCCAGGGTTCCTGGAATGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAAAAGCAAAATGCCAGGGTTCCTGGAATGATA  199

seq1  CACTTCTATTCCAGTCCTTGGAAGACAGTGGCAGGCAAATCACTGTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTATTCCAGTCCTTGGAAGACAGTGGCAGGCAAATCACTGTAAGT  249

seq1  TCAAGATCTGCATGGACATATCAAGTTCTAGTTCAGTAATGAAATCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCTGCATGGACATATCAAGTTCTAGTTCAGTAATGAAATCTTGT  299

seq1  TTCAAAAGGAAGAACCCATGTTACCAAAAGAACAGAAACCTATGCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGGAAGAACCCATGTTACCAAAAGAACAGAAACCTATGCTCTGT  349

seq1  AGAAGCCACAGTGCTTGTTACCCAGACACACTTATTTATTTAATACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACAGTGCTTGTTACCCAGACACACTTATTTATTTAATACAGCT  399

seq1  ATGGTCAGATATGGACAGGCTCCCATAGAGATTCCTCCTACATTGTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGATATGGACAGGCTCCCATAGAGATTCCTCCTACATTGTTACT  449

seq1  ATAGTTAGTGACTCATGGGCCTGAAGAAAAGCAATGGATAGGTTAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGTGACTCATGGGCCTGAAGAAAAGCAATGGATAGGTTAACTAA  499

seq1  CCTGCTATTAACCATATTTATAAGTAGGCAAAGTAAAAATGGTTAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATTAACCATATTTATAAGTAGGCAAAGTAAAAATGGTTAATTTG  549

seq1  CTTCAAAATGTCAAAGTAGAAGCTATTGAGTTACTCAGGAGTTAGTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATGTCAAAGTAGAAGCTATTGAGTTACTCAGGAGTTAGTTAGC  599

seq1  TGTGAACATGGCTTTAATACATTGAAGACTCAACCATTTCTGATATCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATGGCTTTAATACATTGAAGACTCAACCATTTCTGATATCACT  649

seq1  GAGTACTTCTGTGAATGATCCTGGAAGACTCAACCTTCTCTGACATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTCTGTGAATGATCCTGGAAGACTCAACCTTCTCTGACATTGTT  699

seq1  CGGCACTTCTCTGAATGCCCCTGAAATCATGGAATTTTATGAGAAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACTTCTCTGAATGCCCCTGAAATCATGGAATTTTATGAGAAATTCC  749

seq1  AGGCACAGCAAGAAATCTTCCTAAAGTTTGTTTCTGTGGATGTAAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGCAAGAAATCTTCCTAAAGTTTGTTTCTGTGGATGTAAGAATT  799

seq1  AATTTAATACCAACTAACCTGTGAATGTAGAACAAAATAGTACATGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATACCAACTAACCTGTGAATGTAGAACAAAATAGTACATGAATT  849

seq1  GCAAAGATGTGTTTATACATGAAATGGATTAAAGAAATTACAATAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATGTGTTTATACATGAAATGGATTAAAGAAATTACAATAAATTT  899

seq1  AATTGCTGTCTCATTCTGTCTTTAACTATTTGAAAAATATAATTTACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGTCTCATTCTGTCTTTAACTATTTGAAAAATATAATTTACAGA  949

seq1  TATCAAACACTAGTGTTTTAAATGAACACATGGTCAGAAATGAATTC  997
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAACACTAGTGTTTTAAATGAACACATGGTCAGAAATGAATTC  996


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