BAC Information

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BAC

Clone NameB6Ng01-264M09
Chromosome4 (Build37)
Map Location 85,321,945 - 85,431,464
singlet/doubletdoublet
Overlap geneA930009N24
Upstream geneLOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264M09.bB6Ng01-264M09.g
ACCGA068592GA068593
length1,1541,113
definitionB6Ng01-264M09.b B6Ng01-264M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,321,945 - 85,323,115)(85,430,339 - 85,431,464)
sequence
gaattcttggaacatatcaagttaggagacaggatgcaatatttgaggga
tgtctcacgaagaacaaaagtcatagatgtcaactcttataaactgactg
gcactggggaactaaggtaacttattgaaactcaagagttactacttgtt
aaagaagatagcatttggttgtatctcagggagtaggtagagattggaga
ttctacagcagattcttcaaatcttgttaggctagtgttgttaagatgtg
gctccagacaggaactcagcctgttttatgctttgcttttgcagaaactt
taaacgttaggccatcatgtaagtaagatgaagttatcttggaggcatgc
ttgtttccagaagtggtttgtttctgtaagtggtgtgcctctctaggttt
gtttcttggagcatctcagaattctctagtctttgagtacaggagacatg
aagttacaaatcaagcctctaccttactttggtgtgggctcaagattccc
agcagctgactcacacaacaacttctctaatgataggcttctactttacc
taccaagtgttttctcagtttctgaggtattgttgcttgaatgaatactg
ttgcctataggttcatgtatctaaacacccttccaataggtagttctgtt
tgggaaggttataaagccttgaggagtgtattgccttgctgaagtaagta
acctactaggggaggactttgaggtgtctattgattgttcttacttcctg
ttcttgctctctacttccggtttttggataaaaatcttcctgttcctact
cttatgctttcccttcttattaccatggcttcaatggcataatgggctcc
atctctctggaacctaatgcaaaataaaccctttccttctctacgttgct
tttaatcatgatattttaacacaacacagaaaatagctaaaacatgatgt
ttattcttattttatttagcaaaccacaatgcaattctggagcactatac
agcttctttcaacacccagaattgtacacaggatagatgagatgcctgag
cttgggtgatgtatatatgcaagaagagccaggatttactgttgcagaga
ttgttagagatattttcagacgtgccttccttcagtttctccatctttgc
tttc

gaattcttcacatcctcaatggttgggtgtggccctaagggtaagaggac
atcaatgaaagttttaactaccagttcttatgaaggtacaatggaggcag
ggacaaacacaccaatcactttcttcttttcgttgctcctacccataagg
ctaaaaataagtttggcaggcatctaccatgtaaaatatcaactcccttt
cataagcatccttgactgaacttcttctcaactagtccatctaagagaaa
tactgcacaggaagtaaatatttatttaatgcccctcccctgaacctctc
atcacagcaaaaaccattgcaagaggataattttcacatgcttatttata
aaatcatcctagattttatgtgcaaatgtgaattatattgacatatgtag
gttgactagtaagaaaacaggttaccttgtttgcctttaggatgtattaa
atcaaaagtcattaaaatcatgtctccatgtctgctatttctgcatccat
agattcagtcaggtacagattaaaaatatattaaggaataattatatgtg
tactgaaaattaccccccccctgcccattataccccagctgggatggtat
aacatctatttgtgtggaatttaaattattttaggcattataagtaatac
agaggtgatttaaaataaatgagagcccttatgaataatatatgcaaatg
gtaatccatttcttataagaggcttgaacatctgaataatctggtggtcc
ccatgagtgccttgaaaagagatccattgatatcaaaggtttttagactg
cgttctccgtattttggacgggtatgatggcacatgcctttaaagggagg
attcctatgaatttgaaaccattcaaaagcaccaaaataaacaaaaccta
tactctgaaatggcaatgatttagcgccatctatggcactaatgatgaga
ccagggttgtttcagtctgttacagatttatgatattgaaagaaaaggag
gtagggttaaacaaagagaattgttatgaatgccactggaaagttgtata
agcaacacagttactagaaatgttatactcagaaaaatctgtagtcattt
caattaacatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85321945_85323115
seq2: B6Ng01-264M09.b_47_1200

seq1  GAATTCTTGGAACATATCAAGTTAGGAGACAGGATGCAATATTTGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAACATATCAAGTTAGGAGACAGGATGCAATATTTGAGGGA  50

seq1  TGTCTCACGAAGAACAAAAGTCATAGATGTCAACTCTTATAAACTGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACGAAGAACAAAAGTCATAGATGTCAACTCTTATAAACTGACTG  100

seq1  GCACTGGGGAACTAAGGTAACTTATTGAAACTCAAGAGTTACTACTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGAACTAAGGTAACTTATTGAAACTCAAGAGTTACTACTTGTT  150

seq1  AAAGAAGATAGCATTTGGTTGTATCTCAGGGAGTAGGTAGAGATTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATAGCATTTGGTTGTATCTCAGGGAGTAGGTAGAGATTGGAGA  200

seq1  TTCTACAGCAGATTCTTCAAATCTTGTTAGGCTAGTGTTGTTAAGATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGCAGATTCTTCAAATCTTGTTAGGCTAGTGTTGTTAAGATGTG  250

seq1  GCTCCAGACAGGAACTCAGCCTGTTTTATGCTTTGCTTTTGCAGAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGACAGGAACTCAGCCTGTTTTATGCTTTGCTTTTGCAGAAACTT  300

seq1  TAAACGTTAGGCCATCATGTAAGTAAGATGAAGTTATCTTGGAGGCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGTTAGGCCATCATGTAAGTAAGATGAAGTTATCTTGGAGGCATGC  350

seq1  TTGTTTCCAGAAGTGGTTTGTTTCTGTAAGTGGTGTGCCTCTCTAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCAGAAGTGGTTTGTTTCTGTAAGTGGTGTGCCTCTCTAGGTTT  400

seq1  GTTTCTTGGAGCATCTCAGAATTCTCTAGTCTTTGAGTACAGGAGACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGGAGCATCTCAGAATTCTCTAGTCTTTGAGTACAGGAGACATG  450

seq1  AAGTTACAAATCAAGCCTCTACCTTACTTTGGTGTGGGCTCAAGATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAATCAAGCCTCTACCTTACTTTGGTGTGGGCTCAAGATTCCC  500

seq1  AGCAGCTGACTCACACAACAACTTCTCTAATGATAGGCTTCTACTTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGACTCACACAACAACTTCTCTAATGATAGGCTTCTACTTTACC  550

seq1  TACCAAGTGTTTTCTCAGTTTCTGAGGTATTGTTGCTTGAATGAATACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGTGTTTTCTCAGTTTCTGAGGTATTGTTGCTTGAATGAATACTG  600

seq1  TTGCCTATAGGTTCATGTATCTAAACACCCTTCCAATAGGTAGTTCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATAGGTTCATGTATCTAAACACCCTTCCAATAGGTAGTTCTGTT  650

seq1  TGGGAAGGTTATAAAGCCTTGAGGAGTGTATTGCCTTGCTGAAGTAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGTTATAAAGCCTTGAGGAGTGTATTGCCTTGCTGAAGTAAGTA  700

seq1  ACCTACTAGGGGAGGACTTTGAGGTGTCTATTGATTGTTCTTACTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAGGGGAGGACTTTGAGGTGTCTATTGATTGTTCTTACTTCCTG  750

seq1  TTCTTGCTCTCTACTTCCGGTTTTTGGATAAAAATCTTCCTGTTCCTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTCTCTACTTCCGGTTTTTGGATAAAAATCTTCCTGTTCCTACT  800

seq1  CTTATGCTTTCCCTTCTTATTACCATGGCTTCAATGGCATAATGGGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTTTCCCTTCTTATTACCATGGCTTCAATGGCATAATGGGCTCC  850

seq1  ATCTCTCTGGAACCTAATGCAAAATAAACCCTTTCCTTCTCTACGTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTGGAACCTAATGCAAAATAAACCCTTTCCTTCTCTACGTTGCT  900

seq1  TTTAATCATGATATTTTAAACACAACAACAGAAAAATAGCTAAAACATGA  950
      ||||||||||||||||| |||||||| |||| ||||||||||||||||| 
seq2  TTTAATCATGATATTTT-AACACAAC-ACAG-AAAATAGCTAAAACATG-  946

seq1  ATGTTTATTCTTA-TTTATTTAGCAAAACCAACAATGCAATTCTGGAAGC  999
      ||||||||||||| |||||||||||||  | ||||||||||||||| |||
seq2  ATGTTTATTCTTATTTTATTTAGCAAA--CCACAATGCAATTCTGG-AGC  993

seq1  ACTATACAGGCTCTTCCAACACCCAAGAATTGGTACACAGGATAGATGAG  1049
      |||||||||  |||| |||||||| |||||| ||||||||||||||||||
seq2  ACTATACAGCTTCTTTCAACACCC-AGAATT-GTACACAGGATAGATGAG  1041

seq1  ATGCCTGAGCCTGGGGTGATG--TATATGC-AGAGAGGCCAAGATATTAA  1096
      ||||||||| || ||||||||  ||||||| |||   |||| |  ||| |
seq2  ATGCCTGAG-CTTGGGTGATGTATATATGCAAGAAGAGCCAGG--ATTTA  1088

seq1  CTGTTGCCAGGAGATTGTAGAAGAATAAATTTTCAGACGGTGGCTTCTTT  1146
      |||||||   ||||||||   ||   | |||||||||| ||| ||||  |
seq2  CTGTTGC--AGAGATTGTTAGAG---ATATTTTCAGAC-GTGCCTTC-CT  1131

seq1  TCAATTTTTCTCCATCTTTTCTTTC  1171
      |||   ||||||||||||| |||||
seq2  TCA--GTTTCTCCATCTTTGCTTTC  1154


seq1: chr4_85430339_85431464
seq2: B6Ng01-264M09.g_69_1181 (reverse)

seq1  CAAATGTTATTTGAAATTGGACTACCAGAATTTTTCTTGAGTATACATTT  50
      ||||||||| |||||||  ||||| ||| ||||||| ||||||||   ||
seq2  CAAATGTTAATTGAAAT--GACTA-CAG-ATTTTTC-TGAGTATAACATT  45

seq1  TCTAAGTACTGTGTTTGCTTTATACAACTTTTCCAAGTGCATTTCATAAC  100
      ||||   |||||| |||| ||||||||||||  | ||||   ||||||||
seq2  TCTAGTAACTGTG-TTGC-TTATACAACTTT--CCAGTGGCATTCATAAC  91

seq1  AA-TCTCTTTGGTTTAACCCTACCTCCTTTTCTTTCAAATATTCATAAAT  149
      || ||||||| ||||||||||||||||||||||||| |||| ||||||||
seq2  AATTCTCTTT-GTTTAACCCTACCTCCTTTTCTTTC-AATA-TCATAAAT  138

seq1  CCTGTAACAAGACTGAAACAA-CCTGGTCTCATCATTAGTGCCATTAGAT  198
       ||||||| |||||||||||| |||||||||||||||||||||| |||||
seq2  -CTGTAAC-AGACTGAAACAACCCTGGTCTCATCATTAGTGCCA-TAGAT  185

seq1  GGCGCTAAATCATTGCCATTTCAGAGTATAGGTTTTTGTTTATTTTGGTG  248
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCGCTAAATCATTGCCATTTCAGAGTATAGG-TTTTGTTTATTTTGGTG  234

seq1  CTTTTGAATGGTTTCAAATTCATAGGAATCCTCCCTTTAAAGGCATGTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAATGGTTTCAAATTCATAGGAATCCTCCCTTTAAAGGCATGTGC  284

seq1  CATCATACCCGTCCAAAATACGGAGAACGCAGTCTAAAAACC-TTGATAT  347
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATCATACCCGTCCAAAATACGGAGAACGCAGTCTAAAAACCTTTGATAT  334

seq1  CAATGGATCTCTTTTCAAGGCACTCATGGGGACCACCAGATTATTCAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATCTCTTTTCAAGGCACTCATGGGGACCACCAGATTATTCAGAT  384

seq1  GTTCAAGCCTCTTATAAGAAATGGATTACCATTTGCATATATTATTCATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGCCTCTTATAAGAAATGGATTACCATTTGCATATATTATTCATA  434

seq1  AGGGCTCTCATTTATTTTAAATCACCTCTGTATTACTTATAATGCCTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTCATTTATTTTAAATCACCTCTGTATTACTTATAATGCCTAAA  484

seq1  ATAATTTAAATTCCACACAAATAGATGTTATACCATCCCAGCTGGGGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAATTCCACACAAATAGATGTTATACCATCCCAGCTGGGGTAT  534

seq1  AATGGGCAGGGGGGGGGTAATTTTCAGTACACATATAATTATTCCTTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCAGGGGGGGGGTAATTTTCAGTACACATATAATTATTCCTTAAT  584

seq1  ATATTTTTAATCTGTACCTGACTGAATCTATGGATGCAGAAATAGCAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAATCTGTACCTGACTGAATCTATGGATGCAGAAATAGCAGAC  634

seq1  ATGGAGACATGATTTTAATGACTTTTGATTTAATACATCCTAAAGGCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACATGATTTTAATGACTTTTGATTTAATACATCCTAAAGGCAAA  684

seq1  CAAGGTAACCTGTTTTCTTACTAGTCAACCTACATATGTCAATATAATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAACCTGTTTTCTTACTAGTCAACCTACATATGTCAATATAATTC  734

seq1  ACATTTGCACATAAAATCTAGGATGATTTTATAAATAAGCATGTGAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCACATAAAATCTAGGATGATTTTATAAATAAGCATGTGAAAAT  784

seq1  TATCCTCTTGCAATGGTTTTTGCTGTGATGAGAGGTTCAGGGGAGGGGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTTGCAATGGTTTTTGCTGTGATGAGAGGTTCAGGGGAGGGGCA  834

seq1  TTAAATAAATATTTACTTCCTGTGCAGTATTTCTCTTAGATGGACTAGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATATTTACTTCCTGTGCAGTATTTCTCTTAGATGGACTAGTT  884

seq1  GAGAAGAAGTTCAGTCAAGGATGCTTATGAAAGGGAGTTGATATTTTACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGTTCAGTCAAGGATGCTTATGAAAGGGAGTTGATATTTTACA  934

seq1  TGGTAGATGCCTGCCAAACTTATTTTTAGCCTTATGGGTAGGAGCAACGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATGCCTGCCAAACTTATTTTTAGCCTTATGGGTAGGAGCAACGA  984

seq1  AAAGAAGAAAGTGATTGGTGTGTTTGTCCCTGCCTCCATTGTACCTTCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAAGTGATTGGTGTGTTTGTCCCTGCCTCCATTGTACCTTCAT  1034

seq1  AAGAACTGGTAGTTAAAACTTTCATTGATGTCCTCTTACCCTTAGGGCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGGTAGTTAAAACTTTCATTGATGTCCTCTTACCCTTAGGGCCA  1084

seq1  CACCCAACCATTGAGGATGTGAAGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  CACCCAACCATTGAGGATGTGAAGAATTC  1113


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