BAC Information

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BAC

Clone NameB6Ng01-265A03
Chromosome4 (Build37)12 (Build37)
Map Location 81,055,034 - 81,055,56556,929,121 - 56,929,954
singlet/doubletsingletsinglet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265A03.bB6Ng01-265A03.g
ACCGA068768GA068769
length1,004836
definitionB6Ng01-265A03.b B6Ng01-265A03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,055,034 - 81,055,565)(56,929,121 - 56,929,954)
sequence
gaattccttaatccacttagatttgaccttagtacaaggagataggaatg
gatcaatttgcattcttctacattataaccaccagttgtgccagcaccat
ttgttgaaaatgctgtattttttccactggttggatttagctcccttgtc
aaagatcaagtgaccataggtgtgtgggttcatttctgtttcttcaattc
tggtccattggtctacttgtctgtcactataccagtaccatgcagttttt
atcacaattgctcttgtagtaaagctttaggtcaggcatggtgattccac
cagaggttcttttatccttgagaagagtttttgctatcctaggttttttg
ttattccagatgaatttgcagattgctctttctaattcattgaagaattg
agttggaattttgatggggattgcattgaatctgtagattgcttttggca
agatagccatttttacaatgttgatcctgccaatccatgagcatgggaga
tctttccatcttctgagatcttctttaatttctttcttcaaagacttgaa
ttttttatcatacagatctttcactttcttagttagagtcacgccaagat
attttatattatttgtgactatacaagggtgttgtttccccaatttcttt
ctcagcctgtttattctttgtgtagagaaaggccattgacttgttttagt
taattttatatccagctacttcaccgaagctgtttatcaggtttaggagt
tctctggtggaatttttagggtcacttatatatactatcatatcatctgc
aaaaagtgatattttgacttcttcttttccaatttgtatccccttaatct
ccttttgttgtctaattgctctggctaggacttcaaatactatgttgaaa
aggtagggagaaaaatgggcagccttgtctagtccctgattttagtggga
atgcttccagcctctcaccatttactttgatgttgagctactgggtttgg
ctgt
gaattctgctcatcaggcttgtcttactgattggcttaccttctgagcca
tctttttgaccccctaagacgcttcctggcctggcaatgttagactgaaa
atgatggacatgtggttcagtccctagcactgcaaacaaaagtggataca
agtgaaaatatatgtacattatcaattttgagagaaattatatttgttta
ctaactagaaaaaaaagactggaaaaactactcccaaatagtggctgtgt
ttacaaagtagaatttctttgtttctgttttctttacaaaaggcatatgc
ttcttttatcaaaaaaacatcagcttttgtttttaattaacaaaagctgg
tgcagtcatcttttgtgtatatttctctgtccgtgttcacatgctatgat
gacagaaggttgactgttaagtgccttcctcagttactctcttcattcat
tcattcattcattcattcattcatcttcaggcagggtctcgttgttagtc
ttggctggctttgaactcccagagatccatctgactctgccttgcaactc
ctggtactacaaggcactcaccaccatacctggcctctgcatttttttaa
tttacttttatcatttttaatgatatgcatgtatgtgtatttatatgctg
gtgtgtgcatgtgagtgcaggtgccctttaaggccacagcttgacaaatg
cagactaaattttaccatcagaaacaaagacctattcttataatatgtaa
gttgtgctgttcacacaaaagctagattctaatcatgtcatactatcttt
tgcttaaagtgtgtgtgtgtgggggggggggaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81055034_81055565
seq2: B6Ng01-265A03.b_517_1050 (reverse)

seq1  ACAGC--AAACCAGTAGC-CAACATCAAAGTAAATGGAGAGAAGCTGGAA  47
      |||||  || |||||||| |||||||||||||||||| |||| |||||||
seq2  ACAGCCAAACCCAGTAGCTCAACATCAAAGTAAATGGTGAGAGGCTGGAA  50

seq1  GCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCA-CTTTCTCCCT  96
      ||| |||||||||||||||||||||||||||||||||||  |||||||||
seq2  GCATTCCCACTAAAATCAGGGACTAGACAAGGCTGCCCATTTTTCTCCCT  100

seq1  ACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAA  146
      ||||||||||||||||| |||||||  |||||||||||||| ||||||||
seq2  ACCTTTTCAACATAGTATTTGAAGTCCTAGCCAGAGCAATTAGACAACAA  150

seq1  AAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACT  196
      |||||||| |||||||||||||||||||| || |||||||||||||||||
seq2  AAGGAGATTAAGGGGATACAAATTGGAAAAGAAGAAGTCAAAATATCACT  200

seq1  TTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCA  250

seq1  GAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAA  300

seq1  ATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGC  346
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGC  350

seq1  TGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATA  396
      ||||||||||||| |||||||||||||||| |  ||||||||||||||||
seq2  TGAGAAAGAAATTGGGGAAACAACACCCTTGT--ATAGTCACAAATAATA  398

seq1  TAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGAT  446
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TAAAATATCTTGGCGTGACTCTAACTAAGAAAGTGAAAGATCTGTATGAT  448

seq1  AAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG  496
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAATTCAAGTCTTTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG  498

seq1  GAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA  532
      ||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTCCCATGCTCATGGATTGGCAGGATCAA  534

seq1: chr12_56929121_56929954
seq2: B6Ng01-265A03.g_68_903

seq1  GAATTCTGCTCATCAGGCTTGTCTTACTGATTGGCTTACCTTCTGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCATCAGGCTTGTCTTACTGATTGGCTTACCTTCTGAGCCA  50

seq1  TCTTTTTGACCCCCTAAGACGCTTCCTGGCCTGGCAATGTTAGACTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGACCCCCTAAGACGCTTCCTGGCCTGGCAATGTTAGACTGAAA  100

seq1  ATGATGGACATGTGGTTCAGTCCCTAGCACTGCAAACAAAAGTGGATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGACATGTGGTTCAGTCCCTAGCACTGCAAACAAAAGTGGATACA  150

seq1  AGTGAAAATATATGTACATTATCAATTTTGAGAGAAATTATATTTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATATATGTACATTATCAATTTTGAGAGAAATTATATTTGTTTA  200

seq1  CTAACTAGAAAAAAAAGACTGGAAAAACTACTCCCAAATAGTGGCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAGAAAAAAAAGACTGGAAAAACTACTCCCAAATAGTGGCTGTGT  250

seq1  TTACAAAGTAGAATTTCTTTGTTTCTGTTTTCTTTACAAAAGGCATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGTAGAATTTCTTTGTTTCTGTTTTCTTTACAAAAGGCATATGC  300

seq1  TTCTTTTATCAAAAAAACATCAGCTTTTGTTTTTAATTAACAAAAGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATCAAAAAAACATCAGCTTTTGTTTTTAATTAACAAAAGCTGG  350

seq1  TGCAGTCATCTTTTGTGTATATTTCTCTGTCCGTGTTCACATGCTATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCATCTTTTGTGTATATTTCTCTGTCCGTGTTCACATGCTATGAT  400

seq1  GACAGAAGGTTGACTGTTAAGTGCCTTCCTCAGTTACTCTCTTCATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGGTTGACTGTTAAGTGCCTTCCTCAGTTACTCTCTTCATTCAT  450

seq1  TCATTCATTCATTCATTCATTCATCTTCAGGCAGGGTCTCGTTGTTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCATTCATTCATTCATCTTCAGGCAGGGTCTCGTTGTTAGTC  500

seq1  TTGGCTGGCTTTGAACTCCCAGAGATCCATCTGACTCTGCCTTGCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGCTTTGAACTCCCAGAGATCCATCTGACTCTGCCTTGCAACTC  550

seq1  CTGGTACTACAAGGCACTCACCACCATACCTGGCCTCTGCATTTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTACAAGGCACTCACCACCATACCTGGCCTCTGCATTTTTTTAA  600

seq1  TTTACTTTTATCATTTTTAATGATATGCATGTATGTGTATTTATATGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTATCATTTTTAATGATATGCATGTATGTGTATTTATATGCTG  650

seq1  GTGTGTGCATGTGAGTGCAGGTGCCCTTTAAGGCCACAGCTTGACAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGTGAGTGCAGGTGCCCTTTAAGGCCACAGCTTGACAAATG  700

seq1  CAGACTAAATTTTACCATCAGAAACAAAGACCTATTCTTATAATATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAAATTTTACCATCAGAAACAAAGACCTATTCTTATAATATGTAA  750

seq1  GTTGTGCTGTTCACACAAAAGCTAGATTCTAATCATGTCATACTATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTGTTCACACAAAAGCTAGATTCTAATCATGTCATACTATCTTT  800

seq1  TGCTTAAAGTGTGTGTGTGT--GGGGGGGGGAAACA  834
      ||||||||||||||||||||  ||||||||||||||
seq2  TGCTTAAAGTGTGTGTGTGTGGGGGGGGGGGAAACA  836