BAC Information

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BAC

Clone NameB6Ng01-265J04
Chromosome4 (Build37)
Map Location 76,937,837 - 77,087,842
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265J04.bB6Ng01-265J04.g
ACCGA069187GA069188
length1,0561,163
definitionB6Ng01-265J04.b B6Ng01-265J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,086,782 - 77,087,842)(76,937,837 - 76,938,991)
sequence
gaattcagctcttcaatttaaactaagatctatcaacaaaaaaaaaaaca
agcaggtggaaagaaatgtgtgcattattggctttttcttccaaggtaac
tcttgtgagaaaggagaaatgtgattcttaatcaaacaatgaacagttct
tccaggcaaatgagaaaagggtccatatcaggaacatcataagctttaga
tgacaggaatgatcctaaagtaatggagactaaacccttaggtttcatgt
caaagacattgtaatcctatgaattcagctaaaactagcagctctcatcc
atagaaaaaaattaatatttaatcaatgctacacagtatctgtaagtttc
attttccttagctaaggacttagaattggggatatgtacattgctttctt
tactctgcatttgtagctacctcaaccacagaaccactgaattcttaact
gtctttgcatttaatgagcataccagtgaatacacttaaattaaagcagt
gtactaaagactcccagagtttgtacatgtccttgagagatttaaaagta
taaggcatttatttcaggtacttttggttatatctcacagtgtaaaagca
agatacaacttagttaaattgaaatgattgtgttgaacacatctgacagc
aaagttagatctaaaaacatactatagagacaaagccaagtgtatcaaca
tagctaacaaaagcattctactagtcctaagctgcacaagccttttatta
cagcacttgagatagaaaataatttaataatgcccttccaggaccgaaag
gggcctccatgggtttgcagccacatggagggggcaacagtgtcaacagg
ccagaccctccccgactagagttcctggggactggaccagcaaacaaaga
atatacatggaggggtccatggcgctggccacatatatggcagaggatgg
ccttgttgtacatcaatgggaggagatgcccttaagcttgagggtttcgg
tgccctatgtagggatgccaggactagagacagagtagttggatgtttgt
gtggga

gaattccagtcaaaacattatcatccagattaatcagtgcatttaaataa
tggcaaaactaagtcacttctttgtaacactaaaatttgaaaatattatt
caaaatataaacagataatattttaaaaggcatattataatcacaaaaag
agcagcaaaagcattttatataacatattttatttttaaagttgttcaga
aaattaaggaaaataatgtttccattagatataaaagatatttaataaaa
attgtagaaaacatcctcatttgtgaatgtgatacattgcagcattaatt
agaaaggcagtgaatcttcaaggttatatgtccccattcctccactacca
atacagtataattaagtcagaatcctctaagagaatgttctctgtgtcac
tagaccacaaagagcattcagtgtcaaaccgctccagatggaaaagaaat
gcaagcacaggttgcagctttccctctttgtgacacatcacaggcaggtt
caaacagataccataaagtccaatcctgcctcatggcaacacaatatcag
aaaatacagtttccaaaatatttagcaggagcatcagaatacttaagcaa
gaggaaactatcactacaatagagttgtatgtagtattcaaagttaatgg
aaagtaagtctcaaatggagagttacacattagggaatagcttctgaaag
tacaacaaatcaaagaggcagagcgctatttcaaagaaaaagcagccaaa
aatgacacaaagtatgtcatctgttttttttttacacacacacacacaca
cacacacacacacacagagagagagagagagagagagagagagagagaga
gagagagagtcttagacactgttgtcagaaaagcccatgataaatacaac
cttgttggaatgaccatacatctaaaaaccttgaaacttacaaacataat
aacacaaggtgagaatgaagaaaaatctgccaaacactaattaatcaata
gaatcctaacaacctgtaggaaatataagcacaacaatacatagccttta
aaaggtactgactggtgcaactaatggaacggcttaggaaataaacactg
gaaacaacacaggtaaatacattggacatttttgtgtgttaaggccagat
agaaaggatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77086782_77087842
seq2: B6Ng01-265J04.b_47_1102 (reverse)

seq1  TCCCACACACCCACCCACCTACTTCTGTCTTCTAGTCCTGGCATTCCCCT  50
      |||||||||  || ||| |||| |||||| ||||||||||||||  ||||
seq2  TCCCACACAAACATCCAACTAC-TCTGTC-TCTAGTCCTGGCAT--CCCT  46

seq1  ACATTAGGGCACCGAAAACCCTCAAGCTTAAGGGCATCTCCTCCCATTGA  100
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACA-TAGGGCACCG-AAACCCTCAAGCTTAAGGGCATCTCCTCCCATTGA  94

seq1  TGTACAACAAGGCCATCCTCTGCCATATATGTGGCCAGCGCCATGGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACAAGGCCATCCTCTGCCATATATGTGGCCAGCGCCATGGACCC  144

seq1  CTCCATGTATATTCTTTGTTTGCTGGTCCAGTCCCCAGGAACTCTAGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTATATTCTTTGTTTGCTGGTCCAGTCCCCAGGAACTCTAGTCG  194

seq1  GGGAGGGTCTGGCCTGTTGACACTGTTGCCCCCTCCATGTGGCTGCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTCTGGCCTGTTGACACTGTTGCCCCCTCCATGTGGCTGCAAAC  244

seq1  CCATGGAGGCCCC-TTCGGTCCTGGAAGGGCATTATTAAATTATTTTCTA  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGGCCCCTTTCGGTCCTGGAAGGGCATTATTAAATTATTTTCTA  294

seq1  TCTCAAGTGCTGTAATAAAAGGCTTGTGCAGCTTAGGACTAGTAGAATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTGCTGTAATAAAAGGCTTGTGCAGCTTAGGACTAGTAGAATGC  344

seq1  TTTTGTTAGCTATGTTGATACACTTGGCTTTGTCTCTATAGTATGTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGCTATGTTGATACACTTGGCTTTGTCTCTATAGTATGTTTTT  394

seq1  AGATCTAACTTTGCTGTCAGATGTGTTCAACACAATCATTTCAATTTAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAACTTTGCTGTCAGATGTGTTCAACACAATCATTTCAATTTAAC  444

seq1  TAAGTTGTATCTTGCTTTTACACTGTGAGATATAACCAAAAGTACCTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTATCTTGCTTTTACACTGTGAGATATAACCAAAAGTACCTGAA  494

seq1  ATAAATGCCTTATACTTTTAAATCTCTCAAGGACATGTACAAACTCTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCCTTATACTTTTAAATCTCTCAAGGACATGTACAAACTCTGGG  544

seq1  AGTCTTTAGTACACTGCTTTAATTTAAGTGTATTCACTGGTATGCTCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAGTACACTGCTTTAATTTAAGTGTATTCACTGGTATGCTCATT  594

seq1  AAATGCAAAGACAGTTAAGAATTCAGTGGTTCTGTGGTTGAGGTAGCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAAGACAGTTAAGAATTCAGTGGTTCTGTGGTTGAGGTAGCTAC  644

seq1  AAATGCAGAGTAAAGAAAGCAATGTACATATCCCCAATTCTAAGTCCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAGTAAAGAAAGCAATGTACATATCCCCAATTCTAAGTCCTTA  694

seq1  GCTAAGGAAAATGAAACTTACAGATACTGTGTAGCATTGATTAAATATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGAAAATGAAACTTACAGATACTGTGTAGCATTGATTAAATATTA  744

seq1  ATTTTTTTCTATGGATGAGAGCTGCTAGTTTTAGCTGAATTCATAGGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTATGGATGAGAGCTGCTAGTTTTAGCTGAATTCATAGGATT  794

seq1  ACAATGTCTTTGACATGAAACCTAAGGGTTTAGTCTCCATTACTTTAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCTTTGACATGAAACCTAAGGGTTTAGTCTCCATTACTTTAGGA  844

seq1  TCATTCCTGTCATCTAAAGCTTATGATGTTCCTGATATGGACCCTTTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTGTCATCTAAAGCTTATGATGTTCCTGATATGGACCCTTTTCT  894

seq1  CATTTGCCTGGAAGAACTGTTCATTGTTTGATTAAGAATCACATTTCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCTGGAAGAACTGTTCATTGTTTGATTAAGAATCACATTTCTCC  944

seq1  TTTCTCACAAGAGTTACCTTGGAAGAAAAAGCCAATAATGCACACATTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACAAGAGTTACCTTGGAAGAAAAAGCCAATAATGCACACATTTC  994

seq1  TTTCCACCTGCTTGTTTTTTTTTTTGTTGATAGATCTTAGTTTAAATTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTGCTTGTTTTTTTTTTTGTTGATAGATCTTAGTTTAAATTGA  1044

seq1  AGAGCTGAATTC  1061
      ||||||||||||
seq2  AGAGCTGAATTC  1056


seq1: chr4_76937837_76938991
seq2: B6Ng01-265J04.g_67_1229

seq1  GAATTCCAGTCAAAACATTATCATCCAGATTAATCAGTGCATTTAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCAAAACATTATCATCCAGATTAATCAGTGCATTTAAATAA  50

seq1  TGGCAAAACTAAGTCACTTCTTTGTAACACTAAAATTTGAAAATATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACTAAGTCACTTCTTTGTAACACTAAAATTTGAAAATATTATT  100

seq1  CAAAATATAAACAGATAATATTTTAAAAGGCATATTATAATCACAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATAAACAGATAATATTTTAAAAGGCATATTATAATCACAAAAAG  150

seq1  AGCAGCAAAAGCATTTTATATAACATATTTTATTTTTAAAGTTGTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAAGCATTTTATATAACATATTTTATTTTTAAAGTTGTTCAGA  200

seq1  AAATTAAGGAAAATAATGTTTCCATTAGATATAAAAGATATTTAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGGAAAATAATGTTTCCATTAGATATAAAAGATATTTAATAAAA  250

seq1  ATTGTAGAAAACATCCTCATTTGTGAATGTGATACATTGCAGCATTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGAAAACATCCTCATTTGTGAATGTGATACATTGCAGCATTAATT  300

seq1  AGAAAGGCAGTGAATCTTCAAGGTTATATGTCCCCATTCCTCCACTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCAGTGAATCTTCAAGGTTATATGTCCCCATTCCTCCACTACCA  350

seq1  ATACAGTATAATTAAGTCAGAATCCTCTAAGAGAATGTTCTCTGTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTATAATTAAGTCAGAATCCTCTAAGAGAATGTTCTCTGTGTCAC  400

seq1  TAGACCACAAAGAGCATTCAGTGTCAAACCGCTCCAGATGGAAAAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCACAAAGAGCATTCAGTGTCAAACCGCTCCAGATGGAAAAGAAAT  450

seq1  GCAAGCACAGGTTGCAGCTTTCCCTCTTTGTGACACATCACAGGCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACAGGTTGCAGCTTTCCCTCTTTGTGACACATCACAGGCAGGTT  500

seq1  CAAACAGATACCATAAAGTCCAATCCTGCCTCATGGCAACACAATATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGATACCATAAAGTCCAATCCTGCCTCATGGCAACACAATATCAG  550

seq1  AAAATACAGTTTCCAAAATATTTAGCAGGAGCATCAGAATACTTAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAGTTTCCAAAATATTTAGCAGGAGCATCAGAATACTTAAGCAA  600

seq1  GAGGAAACTATCACTACAATAGAGTTGTATGTAGTATTCAAAGTTAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACTATCACTACAATAGAGTTGTATGTAGTATTCAAAGTTAATGG  650

seq1  AAAGTAAGTCTCAAATGGAGAGTTACACATTAGGGAATAGCTTCTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGTCTCAAATGGAGAGTTACACATTAGGGAATAGCTTCTGAAAG  700

seq1  TACAACAAATCAAAGAGGCAGAGCGCTATTTCAAAGAAAAAGCAGCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAAATCAAAGAGGCAGAGCGCTATTTCAAAGAAAAAGCAGCCAAA  750

seq1  AATGACACAAAGTATGTCATCTG-TTTTTTTTTACACACACACACACACA  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATGACACAAAGTATGTCATCTGTTTTTTTTTTACACACACACACACACA  800

seq1  CACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  850

seq1  GAGAGAGAGTCTTAGACACTGTTGTCAGAAAAGCCCATGATAAATACAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGTCTTAGACACTGTTGTCAGAAAAGCCCATGATAAATACAAC  900

seq1  CTTGTTGGAATGACCATACATCTAAAAACCTTGAAACTTACAAACATAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGAATGACCATACATCTAAAAACCTTGAAACTTACAAACATAAT  950

seq1  AACACAA-GTGAG-ATG-AGAAAAATCTGCCAAACACTTATTAATCAATA  996
      ||||||| ||||| ||| |||||||||||||||||||| |||||||||||
seq2  AACACAAGGTGAGAATGAAGAAAAATCTGCCAAACACTAATTAATCAATA  1000

seq1  GAATCCT-ACAACCTGTAGGAAATATTAGCACCACAATACATAG-CTTTA  1044
      ||||||| |||||||||||||||||| ||||| ||||||||||| |||||
seq2  GAATCCTAACAACCTGTAGGAAATATAAGCACAACAATACATAGCCTTTA  1050

seq1  AAA-GTACTGACTGTGCCAACTAAT-GAAC-GCTTAGGAAATTAAAACAC  1091
      ||| ||||||||||   |||||||| |||| |||||||||||  ||||||
seq2  AAAGGTACTGACTGGTGCAACTAATGGAACGGCTTAGGAAAT--AAACAC  1098

seq1  T-GAAACAACACAGTTAAATACATTGACCATTTTTGTG---TAAGCACCA  1137
      | |||||||||||| |||||||||||  ||||||||||   ||||  |||
seq2  TGGAAACAACACAGGTAAATACATTGGACATTTTTGTGTGTTAAG-GCCA  1147

seq1  GTATAGAAAGGGATGTTT  1155
      | ||||||| ||||||||
seq2  G-ATAGAAA-GGATGTTT  1163


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