BAC Information

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BAC

Clone NameB6Ng01-265O22
Chromosome4 (Build37)
Map Location 28,862,814 - 29,081,119
singlet/doubletdoublet
Overlap geneEpha7, LOC100040907
Upstream geneTpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265O22.bB6Ng01-265O22.g
ACCGA069453GA069454
length1,0681,108
definitionB6Ng01-265O22.b B6Ng01-265O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,862,814 - 28,863,890)(29,079,992 - 29,081,119)
sequence
gaattctctcattgtttattgacacatcttgtccaaacagctccctcgca
agtgagtggagtcatgaaggagcgagtactgcagcggagtgtgcagcttt
cctggcaggagccggagcatcccaatggagtcatcacggaatatgaaatc
aagtattatgagaaagtaagtgtgagagagctgtggcgccaacagtgcgg
tgcctgacaccatccaactgcgctgcatgcagtcctgggcattccactac
aattcggagctacatcaggatccatacttactattaatagccatcaccac
cacctctggtttaggattgtgaccaacagctctattggttagctttctgt
gtcacacaaatgagaatattgtactcgtagtggatttcttcaggtttttt
ttttaatttaattattcgatagagcgcttttatgacacagaaactaatca
atccaatacattttgaacagtgtccctttcagtcaatttgtgtgcttaat
gaaactttaatttagggctttcataggaccgatgttttcaaatactgttg
taatagctgatgatattgtgcataatatgtatataataccctccaacact
aagattgtcatgatgttattccattccttagattctctagcataaataca
gaattattatgccttatgcctctttttctatagaaagtctaaaactcatg
tggtgttcctttctatactctccatagaatgaacaaatattaataagaaa
gaatctgtccatatgaatccattcatccatgtcttgtttagaaaggatga
aactgtcaaccttatttactaacacttatgtgagttttaccacacagaaa
cacatcactcaatttaaaatgcagaaaccaccactaataaatagtatgac
cataattgtaataaatgatactatatacatttaatgcagttaggtgaatg
ctccagtacatgaaactacttcactatttagacatgattataaaaataaa
tcctaatatttgacaaaatttgggatgatcactcataaatgtgtacattc
agcatgcactcccacacc

gaattctcacttgtggtggatcctgatttattcctgcaaaataatggaaa
tattgagaaatatttaaatttgtaactttcaaagttatgctaccttggtc
ttgttaagacactgaatgacaccataggaaaataaataattatgtaggtt
gtaactaaatcattgacctgagagaggggatctcatccattggatatcaa
atcaaaatgccgaaaaagatgggtacaaagaaaatgtcttaggctaatga
atgagacaactttggacttatacttttgtttcaaagaaaaatagaagctt
agaaatatatcaaaacagggggctatcaacttaaattctagtcttcaata
catattttcaaatgtcttttgtggttgcagttcatctgtgttactagaag
caaattatcatttttaggcactaaaatcacacagaaaaaggatttttttt
cttccatttccttaaattaccccatggacaaattattactcctcatcatc
accttctttagacagaagaactttagtatttattatcttcttccgggttg
gtagcagagcataacaagtagcaatgactttacgacagggcacacagtgg
acagagcaaaagaaagaggcaccttgtcaactcaggtagagtcatttgtg
attcagaagatcaatgtgctgtcagacgagcttcatgccttttagttagg
tagaggtacgttatctttttacgttcaaaattagtgagccctgtatgaac
tcaagtattaaaaagcagtgtgagatctatattcattctgtacagttatc
ttggccacgcttgagatcctgtaatcaagagaggaagtaaccaggtccat
caataaccacctggagctacccaagcagcaggatgcgcaacaggtaatgg
cagttgcaggacagatctcccaggatcctttttgttaaaaatatataaat
aaatttaaataaatgaagagaggagagagagagagagagagagagagaga
gagagattctgccttcaccagataggagaagagtagatatgagtgaagag
aagagtaagagagagtttcctggccttaaccgtgccaggcttccagtttg
tctcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28862814_28863890
seq2: B6Ng01-265O22.b_44_1111

seq1  GAATTCTCTCATTGTTTATTGACACATCTTGTCCAAACAGCTCCCTCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATTGTTTATTGACACATCTTGTCCAAACAGCTCCCTCGCA  50

seq1  AGTGAGTGGAGTCATGAAGGAGCGAGTACTGCAGCGGAGTGTGCAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGGAGTCATGAAGGAGCGAGTACTGCAGCGGAGTGTGCAGCTTT  100

seq1  CCTGGCAGGAGCCGGAGCATCCCAATGGAGTCATCACGGAATATGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGGAGCCGGAGCATCCCAATGGAGTCATCACGGAATATGAAATC  150

seq1  AAGTATTATGAGAAAGTAAGTGTGAGAGAGCTGTGGCGCCAACAGTGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATGAGAAAGTAAGTGTGAGAGAGCTGTGGCGCCAACAGTGCGG  200

seq1  TGCCTGACACCATCCAACTGCGCTGCATGCAGTCCTGGGCATTCCACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACACCATCCAACTGCGCTGCATGCAGTCCTGGGCATTCCACTAC  250

seq1  AATTCGGAGCTACATCAGGATCCATACTTACTATTAATAGCCATCACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGGAGCTACATCAGGATCCATACTTACTATTAATAGCCATCACCAC  300

seq1  CACCTCTGGTTTAGGATTGTGACCAACAGCTCTATTGGTTAGCTTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGTTTAGGATTGTGACCAACAGCTCTATTGGTTAGCTTTCTGT  350

seq1  GTCACACAAATGAGAATATTGTACTCGTAGTGGATTTCTTCAGGTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACAAATGAGAATATTGTACTCGTAGTGGATTTCTTCAGGTTTTTT  400

seq1  TTTTAATTTAATTATTCGATAGAGCGCTTTTATGACACAGAAACTAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTAATTATTCGATAGAGCGCTTTTATGACACAGAAACTAATCA  450

seq1  ATCCAATACATTTTGAACAGTGTCCCTTTCAGTCAATTTGTGTGCTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATACATTTTGAACAGTGTCCCTTTCAGTCAATTTGTGTGCTTAAT  500

seq1  GAAACTTTAATTTAGGGCTTTCATAGGACCGATGTTTTCAAATACTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTAATTTAGGGCTTTCATAGGACCGATGTTTTCAAATACTGTTG  550

seq1  TAATAGCTGATGATATTGTGCATAATATGTATATAATACCCTCCAACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTGATGATATTGTGCATAATATGTATATAATACCCTCCAACACT  600

seq1  AAGATTGTCATGATGTTATTCCATTCCTTAGATTCTCTAGCATAAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTCATGATGTTATTCCATTCCTTAGATTCTCTAGCATAAATACA  650

seq1  GAATTATTATGCCTTATGCCTCTTTTTCTATAGAAAGTCTAAAACTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTATGCCTTATGCCTCTTTTTCTATAGAAAGTCTAAAACTCATG  700

seq1  TGGTGTTCCTTTCTATACTCTCCATAGAATGAACAAATATTAATAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCCTTTCTATACTCTCCATAGAATGAACAAATATTAATAAGAAA  750

seq1  GAATCTGTCCATATGAATCCATTCATCCATGTCTTGTTTAGAAAGGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTCCATATGAATCCATTCATCCATGTCTTGTTTAGAAAGGATGA  800

seq1  AACTGTCAACCTTATTTACTAACACTTATGTGAGTTTTACCACACAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAACCTTATTTACTAACACTTATGTGAGTTTTACCACACAGAAA  850

seq1  CACATCACTCAATTTAAAATGCAGAAACCACCACTAATAAATAGTATGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACTCAATTTAAAATGCAGAAACCACCACTAATAAATAGTATGAC  900

seq1  CATAATTGTAATAAATGATACTATATACATTTAATGCAGTTAGGTGAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGTAATAAATGATACTATATACATTTAATGCAGTTAGGTGAATG  950

seq1  CTCCAGTACATGAAACTACTTCACTATTTAGACATGATTATAAAAATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTACATGAAACTACTTCACTATTTAGACATGATTATAAAAATAAA  1000

seq1  TCCTAATATTTGACAAAATTTGGGAATGATCAACTTCATTAAAATGTGTA  1050
      |||||||||||||||||||||||| |||||||   ||||  |||||||||
seq2  TCCTAATATTTGACAAAATTTGGG-ATGATCA--CTCAT--AAATGTGTA  1045

seq1  CAATTCAAGGCAATGGCACT-CCACACC  1077
      | |||||  |||   ||||| |||||||
seq2  C-ATTCA--GCA--TGCACTCCCACACC  1068


seq1: chr4_29079992_29081119
seq2: B6Ng01-265O22.g_66_1173 (reverse)

seq1  TTAAGAGACAAACTTGGGAAGACT-GCACGGGTGAAGCAAGGATATCTCT  49
      ||||||||||||||  ||||| || |||||| | | || |||| | ||||
seq2  TTAAGAGACAAACT--GGAAGCCTGGCACGGTTAAGGCCAGGA-AACTCT  47

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTG  99
      ||||  |||| ||||| || |||  | |||  |||| |||| || |||  
seq2  CTCTTACTCT-TCTCT-TCACTC-ATATCT-ACTCT-TCTC-CTATCT--  89

seq1  GGTGAAGCAAGGATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC  149
      |||||||  || || |||||||||||||||||||||||||||||||   |
seq2  GGTGAAGGCAGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT---C  136

seq1  CTCTCTTTCCATTTATTTTAAAATTTAATTTATATATTTTTTAACAAAAA  199
      |||||||  |||||||||  |||||| ||||||||| |||||||||||||
seq2  CTCTCTT--CATTTATTT--AAATTT-ATTTATATA-TTTTTAACAAAAA  180

seq1  GGATCCTGGGAGATCTGTCCTGCAACTGCCATTACCCTGTTGCGCATCCT  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGATCCTGGGAGATCTGTCCTGCAACTGCCATTA-CCTGTTGCGCATCCT  229

seq1  GCTGCTTGGGTAGCTCCAGGTGGTTATTGATGGACCTGGTTACTTCCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGGGTAGCTCCAGGTGGTTATTGATGGACCTGGTTACTTCCTCT  279

seq1  CTTGATTACAGGATCTCAAGCGTGGCCAAGATAACTGTACAGAATGAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTACAGGATCTCAAGCGTGGCCAAGATAACTGTACAGAATGAATA  329

seq1  TAGATCTCACACTGCTTTTTAATACTTGAGTTCATACAGGGCTCACTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCACACTGCTTTTTAATACTTGAGTTCATACAGGGCTCACTAAT  379

seq1  TTTGAACGTAAAAAGATAACGTACCTCTACCTAACTAAAAGGCATGAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACGTAAAAAGATAACGTACCTCTACCTAACTAAAAGGCATGAAGC  429

seq1  TCGTCTGACAGCACATTGATCTTCTGAATCACAAATGACTCTACCTGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGACAGCACATTGATCTTCTGAATCACAAATGACTCTACCTGAGT  479

seq1  TGACAAGGTGCCTCTTTCTTTTGCTCTGTCCACTGTGTGCCCTGTCGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTGCCTCTTTCTTTTGCTCTGTCCACTGTGTGCCCTGTCGTAA  529

seq1  AGTCATTGCTACTTGTTATGCTCTGCTACCAACCCGGAAGAAGATAATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGCTACTTGTTATGCTCTGCTACCAACCCGGAAGAAGATAATAA  579

seq1  ATACTAAAGTTCTTCTGTCTAAAGAAGGTGATGATGAGGAGTAATAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAGTTCTTCTGTCTAAAGAAGGTGATGATGAGGAGTAATAATTT  629

seq1  GTCCATGGGGTAATTTAAGGAAATGGAAGAAAAAAAATCCTTTTTCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGGGTAATTTAAGGAAATGGAAGAAAAAAAATCCTTTTTCTGTG  679

seq1  TGATTTTAGTGCCTAAAAATGATAATTTGCTTCTAGTAACACAGATGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAGTGCCTAAAAATGATAATTTGCTTCTAGTAACACAGATGAAC  729

seq1  TGCAACCACAAAAGACATTTGAAAATATGTATTGAAGACTAGAATTTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCACAAAAGACATTTGAAAATATGTATTGAAGACTAGAATTTAAG  779

seq1  TTGATAGCCCCCTGTTTTGATATATTTCTAAGCTTCTATTTTTCTTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCCCCCTGTTTTGATATATTTCTAAGCTTCTATTTTTCTTTGAA  829

seq1  ACAAAAGTATAAGTCCAAAGTTGTCTCATTCATTAGCCTAAGACATTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTATAAGTCCAAAGTTGTCTCATTCATTAGCCTAAGACATTTTC  879

seq1  TTTGTACCCATCTTTTTCGGCATTTTGATTTGATATCCAATGGATGAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCCATCTTTTTCGGCATTTTGATTTGATATCCAATGGATGAGAT  929

seq1  CCCCTCTCTCAGGTCAATGATTTAGTTACAACCTACATAATTATTTATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTCAGGTCAATGATTTAGTTACAACCTACATAATTATTTATTT  979

seq1  TCCTATGGTGTCATTCAGTGTCTTAACAAGACCAAGGTAGCATAACTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGTGTCATTCAGTGTCTTAACAAGACCAAGGTAGCATAACTTTG  1029

seq1  AAAGTTACAAATTTAAATATTTCTCAATATTTCCATTATTTTGCAGGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACAAATTTAAATATTTCTCAATATTTCCATTATTTTGCAGGAAT  1079

seq1  AAATCAGGATCCACCACAAGTGAGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  AAATCAGGATCCACCACAAGTGAGAATTC  1108


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