BAC Information

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BAC

Clone NameB6Ng01-266E04
Chromosome4 (Build37)
Map Location 65,125,160 - 65,126,320
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa
Downstream geneTrim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266E04.bB6Ng01-266E04.g
ACCGA069699GA069700
length1,2141,155
definitionB6Ng01-266E04.b B6Ng01-266E04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctaaaaaaatg
ttccacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatctagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcgacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
aacatccaaacgctgataccattgcatacacaagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggccccca
atggaggagctagagaaagtaccaaggagctaaagggatctgcaacctat
agtggacacattatgaactaaccagtaccccggagctcttgtctctagct
gcatatgtatcaaagatggcctagtcggcatcactggaaagagagcccat
ggacccgctaactttaatatgcccagttacatggacgccaagggcaaagg
aagtgctggctagggcagttagctctctctacacggcgagctagatcgtc
tgcatgcagctgag

gaattcactatgcatgcaaagcaaagaaaacatattcaaagcagtgagag
agaagcattaagttacacatcaacatgaatccatgagaatagcagacttc
ttaacaaaagctcacgactaagaagacatggactatattttttaaattct
gaaatgcaatagctgccaacccaaacttccatgttcagcaaaactgaaga
atgagaaacttttcatgataaacacaaactaaatgtttgatgtccactaa
tgtgatgcagcagatgatactagagggaatctatacatcaaagaaacaaa
ttcatacatgaggatacagaaggattctcccaacctcagcatctatcatg
taccaatagcctttcagaagatagggactttctttttcagagggtggtca
caggtagagctcctgtactctattggcaacatcatgtccatttggtacct
aactggacatagtgaattatcaaaagaagcagaagaagagtaggaagagg
agaggaagaagaagaaaagaagaaagaatgaaaaagtgtgttgatagata
tgtgttggttaaagatggaaatggatgtagatatgatcatatatctctgt
atacatgtttgaaattatcaataaaaataaatgtaggaagagtgtgtgaa
aaggacttcaaaatctctggaaataatcacaagaaataacaaataatgtt
gtatgaaagtgaaaagctcctgcagggtacaagagacaaatctacataaa
ggaaaaacaagcctttgctaatacatacacacacatacacacacacacac
acacacacacacacacacacacacacacatatataatatatatatatgca
tatatatgataagttcatatcatatgtgtatatatatatatatatatata
tatatatatatatatatatatatataccatatacatacgcatatatttca
tattcaagacatatatagtagatagatagatagatagatagatgtgtgat
atgcctatgagtacgcgtaagctatgatcaataatatgtccatggaaatg
aatgatgttccaaagaataactacaataacctttttgtaagaaattatgt
gccataaaacatatgtaaccttcagatctctatcccaactaaaattgcca
tcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65125160_65126320
seq2: B6Ng01-266E04.g_64_1218

seq1  GAATTCACTATGCATGCAAAGCAAAGAAAACATATTCAAAGCAGTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGCATGCAAAGCAAAGAAAACATATTCAAAGCAGTGAGAG  50

seq1  AGAAGCATTAAGTTACACATCAACATGAATCCATGAGAATAGCAGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATTAAGTTACACATCAACATGAATCCATGAGAATAGCAGACTTC  100

seq1  TTAACAAAAGCTCACGACTAAGAAGACATGGACTATATTTTTTAAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAAGCTCACGACTAAGAAGACATGGACTATATTTTTTAAATTCT  150

seq1  GAAATGCAATAGCTGCCAACCCAAACTTCCATGTTCAGCAAAACTGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAATAGCTGCCAACCCAAACTTCCATGTTCAGCAAAACTGAAGA  200

seq1  ATGAGAAACTTTTCATGATAAACACAAACTAAATGTTTGATGTCCACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACTTTTCATGATAAACACAAACTAAATGTTTGATGTCCACTAA  250

seq1  TGTGATGCAGCAGATGATACTAGAGGGAATCTATACATCAAAGAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGCAGCAGATGATACTAGAGGGAATCTATACATCAAAGAAACAAA  300

seq1  TTCATACATGAGGATACAGAAGGATTCTCCCAACCTCAGCATCTATCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACATGAGGATACAGAAGGATTCTCCCAACCTCAGCATCTATCATG  350

seq1  TACCAATAGCCTTTCAGAAGATAGGGACTTTCTTTTTCAGAGGGTGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATAGCCTTTCAGAAGATAGGGACTTTCTTTTTCAGAGGGTGGTCA  400

seq1  CAGGTAGAGCTCCTGTACTCTATTGGCAACATCATGTCCATTTGGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAGCTCCTGTACTCTATTGGCAACATCATGTCCATTTGGTACCT  450

seq1  AACTGGACATAGTGAATTATCAAAAGAAGCAGAAGAAGAGTAGGAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACATAGTGAATTATCAAAAGAAGCAGAAGAAGAGTAGGAAGAGG  500

seq1  AGAGGAAGAAGAAGAAAAGAAGAAAGAATGAAAAAGTGTGTTGATAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAAGAAGAAAAGAAGAAAGAATGAAAAAGTGTGTTGATAGATA  550

seq1  TGTGTTGGTTAAAGATGGAAATGGATGTAGATATGATCATATATCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGTTAAAGATGGAAATGGATGTAGATATGATCATATATCTCTGT  600

seq1  ATACATGTTTGAAATTATCAATAAAAATAAATGTAGGAAGAGTGTGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTTTGAAATTATCAATAAAAATAAATGTAGGAAGAGTGTGTGAA  650

seq1  AAGGACTTCAAAATCTCTGGAAATAATCACAAGAAATAACAAATAATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTCAAAATCTCTGGAAATAATCACAAGAAATAACAAATAATGTT  700

seq1  GTATGAAAGTGAAAAGCTCCTGCAGGGTACAAGAGACAAATCTACATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAGTGAAAAGCTCCTGCAGGGTACAAGAGACAAATCTACATAAA  750

seq1  GGAAAAACAAGCCTTTGCTAATACATACACACACATACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACAAGCCTTTGCTAATACATACACACACATACACACACACACAC  800

seq1  ACACACACACACACACACACACACACACATATATAATATATATATATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACATATATAATATATATATATGCA  850

seq1  TATATATGATAAGGTTCATATCATATGTG--TATATATATATATATATAT  898
      |||||||||||| ||||||||||||||||  |||||||||||||||||||
seq2  TATATATGATAA-GTTCATATCATATGTGTATATATATATATATATATAT  899

seq1  ATATATATATATATATATATATATATACCATATACATACACATATATTTC  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATATATATATATATATATATATATACCATATACATACGCATATATTTC  949

seq1  ATATTCAAGACATATATAGGTAGATAGATAGATAGATAGATAGATATGT-  997
      |||||||||||||||||| |||||||||||||||||||||||||| ||| 
seq2  ATATTCAAGACATATATA-GTAGATAGATAGATAGATAGATAGATGTGTG  998

seq1  ATATGCCTATAAATAC-CCTAAACTATAATCAATAAATATGTTCAT-GAA  1045
      |||||||||| | ||| | ||| |||| |||||| ||||||| ||| |||
seq2  ATATGCCTATGAGTACGCGTAAGCTATGATCAAT-AATATGTCCATGGAA  1047

seq1  ATGAATGGATGTTCCAAAGATAAACTACAAATTAACTTTTTGTAAAGAAT  1095
      |||||| |||||||||||||  |||||| ||| | |||||||| ||||| 
seq2  ATGAAT-GATGTTCCAAAGAATAACTAC-AATAACCTTTTTGT-AAGAAA  1094

seq1  TTATGTGGCCAATAAACATATGTAACCCTTTCAGAATCTCTATCCATCAT  1145
      |||||| ||||  ||||||||||||||  ||||| ||||||||||    |
seq2  TTATGT-GCCATAAAACATATGTAACC--TTCAG-ATCTCTATCCCAACT  1140

seq1  AAAATTGCTAATCAAA  1161
      ||||||||  ||||||
seq2  AAAATTGC-CATCAAA  1155


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