BAC Information

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BAC

Clone NameB6Ng01-266G09
Chromosome2 (Build37)4 (Build37)
Map Location 37,239,315 - 37,240,211131,214,267 - 131,215,070
singlet/doubletsingletsinglet
Overlap geneRc3h2
Upstream geneLOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl
Downstream geneZbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266G09.bB6Ng01-266G09.g
ACCGA069805GA069806
length895977
definitionB6Ng01-266G09.b B6Ng01-266G09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,239,315 - 37,240,211)(131,214,267 - 131,215,070)
sequence
gaattccgttcccgcacctgggagagctcacagccatttgtaaccccggc
tccaagaacactgcaaacatgtgttacacatttatagaggccaatgctta
tgtatatataagagtaaaattaaacctttttttttttttttttttttgag
acagggtttttctctgtgtagccctggctgttctggaactcactttgtag
accaggctggccttgaactcagaaatccgcctgcctctgcctcccaagtg
ctgggattaaaggcgtgagccaccactgcccggcctaaacctttttttta
acagcacacaaaaaacacagacgtcatattttatacaccatttcatccag
ggcattcctagattctctatttgattcttacaaatgacaactagtggtac
ctgggcagaaaaaggaaatagactctttctctaaccagttataaaaatta
atttggtatgaatttggtatggatcacctggaactataaacctactagaa
gcaagcatgagaaatacctaaggtactggaaaacacaaaaacaaaggcaa
atcaggtaagcggaactatatcaaatcattgaaaaaaaaaatcatcagac
tgaggaggcaacccatagaatgaaagaaaatatttgcaagctatatatat
gacaaatgcaattgaaaacgaatcaacttgttaagtataagaagtaagtt
aaataaacgtttgtcgaaagaagacattcaaatggccaaccagtacaata
agaatgttttacatcggaaatattttagaatatataaataaaaatcaaaa
ggaaatatcacctcactccagtaagaatggttattagtaaaaaaaaaaaa
aaaagccgaaacaacaacatgtctcacttggtaagagcgcctatt
gaattcccgacggcccaataagcgctggcttggtgcgcccacaggatgta
tctgaaagctgtttccttgtccgtcggcaatcttcctcataggtaaatga
gcacaattcagattgccagtaagaaacatgggcagaggtggggatggaga
gagggaggagttgggatttatgagtgtttgcagaggactacaccaaagag
tgtggacagagagcttttagaaagtgagttatggctatcattgtctctag
atagctctgtaaaacatggggattcttggatcccatcactggtctctata
attaaaccatttgttttattaatattattaggcttttttttttttactgt
gatagtgtgttttatagtacttagtcaattatttaaaatataacaaagtg
aagatatcaagctaagtggtgtttgcatcccataactacgtcgttgtgtg
ctgtaattacacccgtgtctgtgatttatgagagggaaaagtctacatga
ggcataattgggggtgggggcgcttgaacaggacatgcggtgtgtgcaga
ctgagcagtcagctccggtccacacgtctctgtgtctccctcctctccac
gtgcactcgagtttgcagacacacttagcactgccccctctcagaccaca
ctcagcgctgtcctctcacagaccatacctcagtcctgccttctttctgt
gagcttccataagagcccacgggctttctctcctgtgtcctttgtcacac
attcacagtgtcatctagaatcctcccactgcaggtggcaaaaataaaca
aaacaaacaaataaatccaatccaatgcagttgaaattaaactgttgcaa
tgaaattaactggtacagtacctgaaatgccaagaactgaatgatggcct
cagacccagtagattgtcatgttccctccctgtcatgctgggaattcagg
tgggaaggggggggtgcattggggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37239315_37240211
seq2: B6Ng01-266G09.b_38_932

seq1  GAATTCAGTTCCCAGCACCTACAGAGAGCTCACAGCCATTTGTAACCCCA  50
      |||||| |||||| ||||||   |||||||||||||||||||||||||| 
seq2  GAATTCCGTTCCC-GCACCT-GGGAGAGCTCACAGCCATTTGTAACCCCG  48

seq1  GCTCCAAGAACACTGCAAACATGTGTTACACATTTATAGAGGCCAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAGAACACTGCAAACATGTGTTACACATTTATAGAGGCCAATGCT  98

seq1  TATGTATATATAAGAGTAAAATTAAACCTTTTTTTTTTTTTTTTTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATAAGAGTAAAATTAAACCTTTTTTTTTTTTTTTTTTTTTG  148

seq1  AGACAGGGTTTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCACTTTGT  198

seq1  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  248

seq1  TGCTGGGATTAAAGGCGTGAGCCACCACTGCCCGGCCTAAACCTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCGTGAGCCACCACTGCCCGGCCTAAACCTTTTTTT  298

seq1  TAACAGCACACAAAAAACACAGACGTCATATTTTATACACCATTTCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAACAGCACACAAAAAACACAGACGTCATATTTTATACACCATTTCATCC  348

seq1  AGGTCATTCATAGATTCTCTATTTGATTCTTACAAATGACAACTAGTAGT  400
      ||| ||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  AGGGCATTCCTAGATTCTCTATTTGATTCTTACAAATGACAACTAGTGGT  398

seq1  ACCTGGGCAGAAGAGTGAAATAGACTCTATCTCTAACCAGTTATAAAAAT  450
      |||||||||||| |  |||||||||||| |||||||||||||||||||||
seq2  ACCTGGGCAGAAAAAGGAAATAGACTCTTTCTCTAACCAGTTATAAAAAT  448

seq1  TAATTTGGTATGAATTTGGTATGGATCACCTGGAACTATAAACCTACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGTATGAATTTGGTATGGATCACCTGGAACTATAAACCTACTAG  498

seq1  AAGCAAGCATGAGAAATACCTAAGGTACTGGAAAACACAAAAACAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCATGAGAAATACCTAAGGTACTGGAAAACACAAAAACAAAGGC  548

seq1  AAATCAGGTAAGCGGAACTATATCAAATCATTGAAAAAAAAAATCATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGTAAGCGGAACTATATCAAATCATTGAAAAAAAAAATCATCAG  598

seq1  ACTGAGGAGGCAACCCAGAGAATGAAAGAAAATATTTGCAAGCTATATAT  650
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGAGGAGGCAACCCATAGAATGAAAGAAAATATTTGCAAGCTATATAT  648

seq1  ATGACAAATGCAATTCAAAACAAATCAACTTGTTAAGTATAAGAAGTAAG  700
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  ATGACAAATGCAATTGAAAACGAATCAACTTGTTAAGTATAAGAAGTAAG  698

seq1  TTAAATAAACGTTTGTCGAAAGAAGACATTCAAATGGCCAACCAGTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAACGTTTGTCGAAAGAAGACATTCAAATGGCCAACCAGTACAA  748

seq1  TAAGAATGTTTAACATCAGTAATATTTTAGAATATATAAATAAAAATCAA  800
      ||||||||||| ||||| | ||||||||||||||||||||||||||||||
seq2  TAAGAATGTTTTACATCGGAAATATTTTAGAATATATAAATAAAAATCAA  798

seq1  AATGAAATATCACCTCACTCCAGTAAGAATGGTTATTATTAAAAAAAAAA  850
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGGAAATATCACCTCACTCCAGTAAGAATGGTTATTAGTAAAAAAAAAA  848

seq1  AAAAAAGCCAAAACAACAACATGGCTCAGTTGGTAAGAGCGCCTATT  897
      ||||||||| ||||||||||||| |||| ||||||||||||||||||
seq2  AAAAAAGCCGAAACAACAACATGTCTCACTTGGTAAGAGCGCCTATT  895

seq1: chr4_131214267_131215070
seq2: B6Ng01-266G09.g_233_1039

seq1  ATGAGTGTTTGCAGAGGACTACACCAAAGAGTGTGGACAGAGAGCTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTTGCAGAGGACTACACCAAAGAGTGTGGACAGAGAGCTTTTA  50

seq1  GAAAGTGAGTTATGGCTATCATTGTCTCTAGATAGCTCTGTAAAACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGAGTTATGGCTATCATTGTCTCTAGATAGCTCTGTAAAACATGG  100

seq1  GGATTCTTGGATCCCATCACTGGTCTCTATAATTAAACCATTTGTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTGGATCCCATCACTGGTCTCTATAATTAAACCATTTGTTTTAT  150

seq1  TAATATTATTAGGCTTTTTTTTTTTTACTGTGATAGTGTGTTTTATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTATTAGGCTTTTTTTTTTTTACTGTGATAGTGTGTTTTATAGTA  200

seq1  CTTAGTCAATTATTTAAAATATAACAAAGTGAAGATATCAAGCTAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCAATTATTTAAAATATAACAAAGTGAAGATATCAAGCTAAGTGG  250

seq1  TGTTTGCATCCCATAACTACGTCGTTGTGTGCTGTAATTACACCCGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATCCCATAACTACGTCGTTGTGTGCTGTAATTACACCCGTGTC  300

seq1  TGTGATTTATGAGAGGGAAAAGTCTACATGAGGCATAATTGGGGGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTATGAGAGGGAAAAGTCTACATGAGGCATAATTGGGGGTGGGG  350

seq1  GCGCTTGAACAGGACATGCGGTGTGTGCAGACTGAGCAGTCAGCTCCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTGAACAGGACATGCGGTGTGTGCAGACTGAGCAGTCAGCTCCGGT  400

seq1  CCACACGTCTCTGTGTCTCCCTCCTCTCCACGTGCACTCGAGTTTGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGTCTCTGTGTCTCCCTCCTCTCCACGTGCACTCGAGTTTGCAGA  450

seq1  CACACTTAGCACTGCCCCCTCTCAGACCACACTCAGCGCTGTCCTCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTAGCACTGCCCCCTCTCAGACCACACTCAGCGCTGTCCTCTCAC  500

seq1  AGACCATACCTCAGTCCTGCCTTCTTTCTGTGAGCTTCCATAAGAGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATACCTCAGTCCTGCCTTCTTTCTGTGAGCTTCCATAAGAGCCCA  550

seq1  CGGGCTTTCTCTCCTGTGTCCTTTGTCACACATTCACAGTGTCATCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTTTCTCTCCTGTGTCCTTTGTCACACATTCACAGTGTCATCTAGA  600

seq1  ATCCTCCCACTGCAGGTGGCAAAAATAAAC-AAACAAACAAATAAATCCA  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCCTCCCACTGCAGGTGGCAAAAATAAACAAAACAAACAAATAAATCCA  650

seq1  ATCCAATGCAGTTGAAA-TAAACTGTTGCAATGAAATTAACTGGTACAGT  698
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  ATCCAATGCAGTTGAAATTAAACTGTTGCAATGAAATTAACTGGTACAG-  699

seq1  TACCTGAAAATGCCAAGAACTGATTGATGGCTTCAGACCCAGCAGATTGG  748
      |||||| |||||||||||||||| ||||||| |||||||||| |||||| 
seq2  TACCTG-AAATGCCAAGAACTGAATGATGGCCTCAGACCCAGTAGATTGT  748

seq1  CATG-TCCCTCCCTGTCATGCTGGGAATTCAGGTGGGA--GGGGGGGTGC  795
      |||| |||||||||||||||||||||||||||||||||  ||||||||||
seq2  CATGTTCCCTCCCTGTCATGCTGGGAATTCAGGTGGGAAGGGGGGGGTGC  798

seq1  ATTGTGGTC  804
      |||| ||||
seq2  ATTGGGGTC  807