BAC Information

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BAC

Clone NameB6Ng01-266P14
Chromosome11 (Build37)4 (Build37)
Map Location 42,112,826 - 42,113,280114,510,416 - 114,511,478
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1
Downstream geneGabra6, Gabrb2, Atp10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266P14.bB6Ng01-266P14.g
ACCGA070230GA070231
length4401,057
definitionB6Ng01-266P14.b B6Ng01-266P14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,112,826 - 42,113,280)(114,510,416 - 114,511,478)
sequence
gaattctttttctttagtactgtttgctttttgtttgagagctttaagta
tctagacatttgcctatgatgaaatagggatctgacttttctatgaatgg
ataccaattctattcattgaaatggtgtcctagtatcacttattcatttt
ttgtcactgctttgtaaggtttttgttgttgttcacttttttaaatatag
gtctcatgtagtccagattgacctcaaactcactagaaagctgagtctga
tcctcttggctcttgctgtcacctctcaagtgctgggattacagggtatg
tcactacacttgcctcttcacttaggtttttttttttttttttttctcct
cctatggggtttgcagccccataggaggaacaacaatatgaactaaccag
tacctccagagctccctgggactaaaccaccaatcaaaga

gaattcatcgcttcctgactatgtggcactgagcaagtgatctaacatct
ccgtgttctgtttcctaacctgaaaaatggggccatgctattttccactt
cttaaggctgatgtgtgaactaaatgggctgccatgtaccacagcactta
gaacagagcctggcacatggacttcagtactatgaccacaaagtactggg
ttgtgacagcaagcagcatgcacttgaacaaaggacatggggctccagag
gattcaaccccatgggctcctggtcagaaagcccacccacactaggtctt
gactcacacaagtaaatggacattattttaagccactaggtatgcagtaa
ttgttcaggtcagtaagaacacctttcagtcagaacataagtcgccttgc
tacattctgttggctgaaggagtcacaggtgagcacagattcagtatgag
tgagaaccccatagcaccttgcacagcatgaggtatggtctctagtggac
tatctttggataccagcaatcaaaagtactatcaattcctcaaggctaaa
tcccaccttgacactgtgtctggctgacacttttctggaaggtagaatac
aacgttgtgttaagaaaactgtttgatggggtcgctgggtgcgatattag
aactgagctctcatactgaaatcatcatctactttatccctacccaaacc
aagtgtgtccgccctagaaagattctcaagggccacgtagcttgatcctc
tgccacgagggaagttgagcccttcagagggaaagagatttcccagtgtc
ccacaagcagccacagacagggcaagagatgaagtacctggatgttcaac
ctctagatcagctgagctaatgaacactctgctctgtccccaaaggaaga
agccccacaatgccttcacttcagagaggacaggtagagtgaaactttcc
ccaaagagaccaccagagactccagactctggagacaggcaccagagcac
actgcacactaaacacgtacatccaatcctctgcactctgatcagagaat
cacatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42112826_42113280
seq2: B6Ng01-266P14.b_216_488

seq1  GGTTTTTGTTGTTGTTGTTGTTGCTGGGTTTTTTTTTGTTTTGTTTTGGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTGTTTTTTGTTTTTTGTTTTGTTTTTTTTTGATGAGAAGAGATGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGATTACCTTTTCTGACTGCAGAATCTAAAGATGGAGAAAGCCACTTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTTTTATAAACGGTGGGGAACTTGTTGTTCTTC-CTGTGCAGTTGCA  199
                         ||   |||||||| ||| || |    ||  |
seq2  -------------------GGTTTTTGTTGTTGTTCACTTT----TTTAA  27

seq1  ATCCCCTTCTGCTCCATTTCTTCC--ACTGACCTTCCACTGGTCTCCCCA  247
      ||     |||    ||| |  |||  | ||||||   |     ||| | |
seq2  ATATAGGTCT----CATGTAGTCCAGATTGACCTCAAA-----CTCACTA  68

seq1  G---GCTCAGTCCAATGGTTGGTTGGCTGTGAGTATCTGCATCTACATTA  294
      |   ||| ||||  ||  |   |||||| |   | ||  | |||      
seq2  GAAAGCTGAGTCTGATCCT--CTTGGCTCTTGCTGTC-ACCTCT------  109

seq1  GGCAGGCACTGGCAGAGCCTCTAGGGGGTCAGCTATCACCAGGCTCCGGC  344
        || |  |||| |       ||  ||||    | |||| |         
seq2  --CAAGTGCTGGGA------TTACAGGGT---ATGTCACTA---------  139

seq1  CAGCAAGAGCATCTTGACATCAGTAATACTGTTGAGTTTGGTGTCTTCAG  394
         ||   || |||| || |  ||  |  | ||   |||  | || ||  
seq2  ---CACTTGCCTCTTCACTTAGGTTTTTTTTTTTTTTTTTTTCTCCTCCT  186

seq1  ATGGG--ATGGATCCC--TAG-------------ATGA----------AC  417
      |||||   || | |||  |||             ||||          ||
seq2  ATGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAACCAGTAC  236

seq1  CTCACAGAGCTCCCAGGTACTAAACCACCAACCAAAGA  455
      ||| |||||||||| || ||||||||||||| ||||||
seq2  CTC-CAGAGCTCCCTGGGACTAAACCACCAATCAAAGA  273


seq1: chr4_114510416_114511478
seq2: B6Ng01-266P14.g_75_1125

seq1  ATCGCTTCCTGACTATGTGGCACTGAGCAAGTGATCTAACATCTCCGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTCCTGACTATGTGGCACTGAGCAAGTGATCTAACATCTCCGTGT  50

seq1  TCTGTTTCCTAACCTGAAAAATGGGGCCATGCTATTTTCCACTTCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCTAACCTGAAAAATGGGGCCATGCTATTTTCCACTTCTTAAG  100

seq1  GCTGATGTGTGAACTAAATGGGCTGCCATGTACCACAGCACTTAGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTGTGAACTAAATGGGCTGCCATGTACCACAGCACTTAGAACAG  150

seq1  AGCCTGGCACATGGACTTCAGTACTATGACCACAAAGTACTGGGTTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCACATGGACTTCAGTACTATGACCACAAAGTACTGGGTTGTGA  200

seq1  CAGCAAGCAGCATGCACTTGAACAAAGGACATGGGGCTCCAGAGGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCAGCATGCACTTGAACAAAGGACATGGGGCTCCAGAGGATTCA  250

seq1  ACCCCATGGGCTCCTGGTCAGAAAGCCCACCCACACTAGGTCTTGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGGGCTCCTGGTCAGAAAGCCCACCCACACTAGGTCTTGACTCA  300

seq1  CACAAGTAAATGGACATTATTTTAAGCCACTAGGTATGCAGTAATTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTAAATGGACATTATTTTAAGCCACTAGGTATGCAGTAATTGTTC  350

seq1  AGGTCAGTAAGAACACCTTTCAGTCAGAACATAAGTCGCCTTGCTACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTAAGAACACCTTTCAGTCAGAACATAAGTCGCCTTGCTACATT  400

seq1  CTGTTGGCTGAAGGAGTCACAGGTGAGCACAGATTCAGTATGAGTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCTGAAGGAGTCACAGGTGAGCACAGATTCAGTATGAGTGAGAA  450

seq1  CCCCATAGCACCTTGCACAGCATGAGGTATGGTCTCTAGTGGACTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGCACCTTGCACAGCATGAGGTATGGTCTCTAGTGGACTATCTT  500

seq1  TGGATACCAGCAATCAAAAGTACTATCAATTCCTCAAGGCTAAATCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCAGCAATCAAAAGTACTATCAATTCCTCAAGGCTAAATCCCAC  550

seq1  CTTGACACTGTGTCTGGCTGACACTTTTCTGGAAGGTAGAATACAACGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACTGTGTCTGGCTGACACTTTTCTGGAAGGTAGAATACAACGTT  600

seq1  GTGTTAAGAAAACTGTTTGATGGGGTCGCTGGGTGCGATATTAGAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAGAAAACTGTTTGATGGGGTCGCTGGGTGCGATATTAGAACTGA  650

seq1  GCTCTCATACTGAAATCATCATCTACTTTATCCCTACCCAAACCAAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATACTGAAATCATCATCTACTTTATCCCTACCCAAACCAAGTGT  700

seq1  GTCCGCCCTAGAAAGATTCTCAAGGGCCACGTAGCTTGATCCTCTGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCCCTAGAAAGATTCTCAAGGGCCACGTAGCTTGATCCTCTGCCAC  750

seq1  GAGGGAAGTTGAGCCCTTCAGAGGGAAAGAGATTTCCCAGTGTCCCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGTTGAGCCCTTCAGAGGGAAAGAGATTTCCCAGTGTCCCACAA  800

seq1  GCAGCCACAGACAGGGCAAGAGATGAAGTACCTGGATGTTCAACCTCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACAGACAGGGCAAGAGATGAAGTACCTGGATGTTCAACCTCTAG  850

seq1  ATCAGCTGAGCTAATGAACACTCTGCTCTGTCCCCAAAGGAAGAAGCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGAGCTAATGAACACTCTGCTCTGTCCCCAAAGGAAGAAGCCCC  900

seq1  ACAATGCCTTCACTTCAGAAGAGGACAGGTAGAGTGAAACTTTCCCCAAA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAATGCCTTCACTTCAG-AGAGGACAGGTAGAGTGAAACTTTCCCCAAA  949

seq1  GAGACCACCAGAGACTCCAGACTCTGGAGAACAGGCACCAGAGCCACACT  1000
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  GAGACCACCAGAGACTCCAGACTCTGGAG-ACAGGCACCAGAG-CACACT  997

seq1  GCACACTAAACACGGTACATCCCAATCCTCTGGCCCACTCTGGATTCCAG  1050
      ||||||||||||| |||||| |||||||||||   |||||| |||  || 
seq2  GCACACTAAACAC-GTACAT-CCAATCCTCTG---CACTCT-GAT--CA-  1038

seq1  GAGAATCACATGT  1063
      |||||||||||||
seq2  GAGAATCACATGT  1051


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