BAC Information

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BAC

Clone NameB6Ng01-267C21
Chromosome4 (Build37)
Map Location 36,257,173 - 36,435,401
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267C21.bB6Ng01-267C21.g
ACCGA070381GA070382
length1,1471,114
definitionB6Ng01-267C21.b B6Ng01-267C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,434,256 - 36,435,401)(36,257,173 - 36,258,290)
sequence
gaattcatagcaaagagaaaattgtgggcctcagtagttgtttaaactag
attctacacaaagaagaatttcagatttcatccttaatagttgtggattg
agacccaaatgctttatgaatttaaaatattaatctgatttcttcctctc
ataactgctgaagtatattgtcttctgtcaatgtaagtgacttgcatttg
tgtgtttctcaccaatttgtccctagtggtctctttcttggtacttcatc
tagctggcaatagacttaagttgtactcaatcttgtgtttcacagagtca
cattactttgttgccacttctgttttggttttataagacatgatcacatt
aagtggaatagggtgaaagtgaaatattctgttgcccaggctgcccttga
atttgtgctgatcctcctgcatcagccaccagactgccctgattacaggt
gcgacccaccatgcttagttttcttaatctgataatttgtcttactgatg
agttctgaagcaggttgttatgacttgcatagcataggtctcccacatct
tcatatttatcccgtaggctccactccacatgtattagaattttcatctt
gtttcatttattttctttgactctgattttgtatccttgtccctctggat
tgtataatttataaatacattaaattttttattctgtatctagttctgat
tcagctgctagatgatttgctttcaaaatgtgatttgagttgtttttctt
ttccattttctttgttcattttttctcaaatggatagtgctaatttatct
tcagctctttgactcctcatgcctatggggtgaaatacagctgtttgttt
ttacatatctagggctcagtggattcctttcttgtatggttttaattttc
agtgacttttttatgtaaattttaaacattgtggcaatctatagaaattt
acataagtgatatttttatccatattgtcaaacatctagtagaatttaga
aacattccttgaaaagcacctggagatttagaatagaaattatagaatat
ttgagggactcaagaataaaaattggtgatgctttctgtagaccttttcc
ttttccttctttccatcagagctctgaacggaaatggattcagtggt

gaattcaaataaatagctttgcaatcatacctggttaaaacttctttatt
tgaaggagaaatgttgtgattgtatataaaggaactgatgtacatataag
aaaactgactacacaaaaattttggcaatgttgaaactcaaagtaattaa
ataatacacatccagcaaagccaatgtataaaagtgagattgtgatagca
tgtagaaatattgatttcagttgaagcattttatttttatgaaataggtc
attttagtacatgcaaggatacatgttgaattctttatattaatttatct
tagaagtctatgccatataataggttccagatatgtccattgaacaaact
tgaattaataccaagagaaaacgtagttcatatcatcctgaatctatgca
caattaaaaaccacgctgttgcagtaatttccaacctcaacaagcccata
taaaaaggcataactcagttattatatttataagttatctgcctagatcg
ggcagatctatcactctcctcacttattccgggaccctttgctacttgca
gtttttcctggacacattgttctgctccatattggcttctaactcttcct
ccttcatcctttctccttctcctttttgccccctctgagacctccagtct
cacctttccccttctgcccaatcataggttctagtccttatttgaccagt
tagaatggggagaaggttcactgtgatcacctgagtatgtgatctactcc
ttgttgggggcagcccctctttttttggggggtgagggtttcaagacagg
gtttctctgtataaccctggctatcctagaactcactttgtagaccaggc
tagcctcgaactcagaaatctgcctgcctctgccttccgagtgctgggat
taaaggcgggtgccaccatgccccggctcgggggggcagcccctcttgag
gaagaagaattaaatcaaattacaacagcatcaggcactcacacaccaca
caatatacacacacattatgttatattatgccataaggtatatgcacaca
catcgtttggagaaaagaacgccaattgacagaaatgaatcaacttctgc
attgaattcgcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36434256_36435401
seq2: B6Ng01-267C21.b_48_1194 (reverse)

seq1  ACCACTAGAATCCCATCTCCGTTCAGAGCTCTTGATGGAAAGAAGGAAAA  50
      |||||| |||| |||| |||||||||||||| ||||||||||||||||||
seq2  ACCACT-GAAT-CCATTTCCGTTCAGAGCTC-TGATGGAAAGAAGGAAAA  47

seq1  AGAAAAGTCTTACAGAAAGCATTCACAA-TTTTATTCTTGAGTCCCTC-A  98
       ||||||   ||||||||||||   ||| ||||||||||||||||||| |
seq2  GGAAAAGGTCTACAGAAAGCATCACCAATTTTTATTCTTGAGTCCCTCAA  97

seq1  ATA-TCTATAATTTCTA-TCTAAAT-TCTCAGTGCTTTTCAAGGAATGTA  145
      ||| ||||||||||||| ||||||| ||   |||||||||||||||||| 
seq2  ATATTCTATAATTTCTATTCTAAATCTCCAGGTGCTTTTCAAGGAATGT-  146

seq1  TCCTAAATTTCTACTAGATGTTTGACAATATGGAT-AAAATATCACTTAT  194
      | ||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTAAA-TTCTACTAGATGTTTGACAATATGGATAAAAATATCACTTAT  195

seq1  GTAAATTTCTATAGATTGCCACAATGTTTAAAATTTACATAAAAAAGTCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTCTATAGATTGCCACAATGTTTAAAATTTACATAAAAAAGTCA  245

seq1  CTGAAAATTAAAACCATACAAGAAAGGAATCCACTGAGCCCTAGATATGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATTAAAACCATACAAGAAAGGAATCCACTGAGCCCTAGATATGT  295

seq1  AAAAACAAACAGCTGTATTTCACCCCATAGGCATGAGGAGTCAAAGAGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAGCTGTATTTCACCCCATAGGCATGAGGAGTCAAAGAGCT  345

seq1  GAAGATAAATTAGCACTATCCATTTGAGAAAAAATGAACAAAGAAAATGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAATTAGCACTATCCATTTGAGAAAAAATGAACAAAGAAAATGG  395

seq1  AAAAGAAAAACAACTCAAATCACATTTTGAAAGCAAATCATCTAGCAGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAACAACTCAAATCACATTTTGAAAGCAAATCATCTAGCAGCT  445

seq1  GAATCAGAACTAGATACAGAATAAAAAATTTAATGTATTTATAAATTATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAACTAGATACAGAATAAAAAATTTAATGTATTTATAAATTATA  495

seq1  CAATCCAGAGGGACAAGGATACAAAATCAGAGTCAAAGAAAATAAATGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGAGGGACAAGGATACAAAATCAGAGTCAAAGAAAATAAATGAA  545

seq1  ACAAGATGAAAATTCTAATACATGTGGAGTGGAGCCTACGGGATAAATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGAAAATTCTAATACATGTGGAGTGGAGCCTACGGGATAAATAT  595

seq1  GAAGATGTGGGAGACCTATGCTATGCAAGTCATAACAACCTGCTTCAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTGGGAGACCTATGCTATGCAAGTCATAACAACCTGCTTCAGAA  645

seq1  CTCATCAGTAAGACAAATTATCAGATTAAGAAAACTAAGCATGGTGGGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGTAAGACAAATTATCAGATTAAGAAAACTAAGCATGGTGGGTC  695

seq1  GCACCTGTAATCAGGGCAGTCTGGTGGCTGATGCAGGAGGATCAGCACAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTAATCAGGGCAGTCTGGTGGCTGATGCAGGAGGATCAGCACAA  745

seq1  ATTCAAGGGCAGCCTGGGCAACAGAATATTTCACTTTCACCCTATTCCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGGCAGCCTGGGCAACAGAATATTTCACTTTCACCCTATTCCAC  795

seq1  TTAATGTGATCATGTCTTATAAAACCAAAACAGAAGTGGCAACAAAGTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGATCATGTCTTATAAAACCAAAACAGAAGTGGCAACAAAGTAA  845

seq1  TGTGACTCTGTGAAACACAAGATTGAGTACAACTTAAGTCTATTGCCAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTGTGAAACACAAGATTGAGTACAACTTAAGTCTATTGCCAGC  895

seq1  TAGATGAAGTACCAAGAAAGAGACCACTAGGGACAAATTGGTGAGAAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAGTACCAAGAAAGAGACCACTAGGGACAAATTGGTGAGAAACA  945

seq1  CACAAATGCAAGTCACTTACATTGACAGAAGACAATATACTTCAGCAGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGCAAGTCACTTACATTGACAGAAGACAATATACTTCAGCAGTT  995

seq1  ATGAGAGGAAGAAATCAGATTAATATTTTAAATTCATAAAGCATTTGGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGAAGAAATCAGATTAATATTTTAAATTCATAAAGCATTTGGGT  1045

seq1  CTCAATCCACAACTATTAAGGATGAAATCTGAAATTCTTCTTTGTGTAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCACAACTATTAAGGATGAAATCTGAAATTCTTCTTTGTGTAGA  1095

seq1  ATCTAGTTTAAACAACTACTGAGGCCCACAATTTTCTCTTTGCTATGAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTTAAACAACTACTGAGGCCCACAATTTTCTCTTTGCTATGAAT  1145

seq1  TC  1146
      ||
seq2  TC  1147


seq1: chr4_36257173_36258290
seq2: B6Ng01-267C21.g_66_1179

seq1  GAATTCAAATAAATAGCTTTGCAATCATACCTGGTTAAAACTTCTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAAATAGCTTTGCAATCATACCTGGTTAAAACTTCTTTATT  50

seq1  TGAAGGAGAAATGTTGTGATTGTATATAAAGGAACTGATGTACATATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGAAATGTTGTGATTGTATATAAAGGAACTGATGTACATATAAG  100

seq1  AAAACTGACTACACAAAAATTTTGGCAATGTTGAAACTCAAAGTAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGACTACACAAAAATTTTGGCAATGTTGAAACTCAAAGTAATTAA  150

seq1  ATAATACACATCCAGCAAAGCCAATGTATAAAAGTGAGATTGTGATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACACATCCAGCAAAGCCAATGTATAAAAGTGAGATTGTGATAGCA  200

seq1  TGTAGAAATATTGATTTCAGTTGAAGCATTTTATTTTTATGAAATAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATATTGATTTCAGTTGAAGCATTTTATTTTTATGAAATAGGTC  250

seq1  ATTTTAGTACATGCAAGGATACATGTTGAATTCTTTATATTAATTTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTACATGCAAGGATACATGTTGAATTCTTTATATTAATTTATCT  300

seq1  TAGAAGTCTATGCCATATAATAGGTTCCAGATATGTCCATTGAACAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCTATGCCATATAATAGGTTCCAGATATGTCCATTGAACAAACT  350

seq1  TGAATTAATACCAAGAGAAAACGTAGTTCATATCATCCTGAATCTATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAATACCAAGAGAAAACGTAGTTCATATCATCCTGAATCTATGCA  400

seq1  CAATTAAAAACCACGCTGTTGCAGTAATTTCCAACCTCAACAAGCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAACCACGCTGTTGCAGTAATTTCCAACCTCAACAAGCCCATA  450

seq1  TAAAAAGGCATAACTCAGTTATTATATTTATAAGTTATCTGCCTAGATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGCATAACTCAGTTATTATATTTATAAGTTATCTGCCTAGATCG  500

seq1  GGCAGATCTATCACTCTCCTCACTTATTCCGGGACCCTTTGCTACTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTATCACTCTCCTCACTTATTCCGGGACCCTTTGCTACTTGCA  550

seq1  GTTTTTCCTGGACACATTGTTCTGCTCCATATTGGCTTCTAACTCTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTGGACACATTGTTCTGCTCCATATTGGCTTCTAACTCTTCCT  600

seq1  CCTTCATCCTTTCTCCTTCTCCTTTTTGCCCCCTCTGAGACCTCCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCCTTTCTCCTTCTCCTTTTTGCCCCCTCTGAGACCTCCAGTCT  650

seq1  CACCTTTCCCCTTCTGCCCAATCATAGGTTCTAGTCCTTATTTGACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCCCCTTCTGCCCAATCATAGGTTCTAGTCCTTATTTGACCAGT  700

seq1  TAGAATGGGGAGAAGGTTCACTGTGATCACCTGAGTATGTGATCTACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGGGAGAAGGTTCACTGTGATCACCTGAGTATGTGATCTACTCC  750

seq1  TTGTTGGGGGCAGCCCCTCTTTTTTTGGGGGGTGAGGGTTTCAAGACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGGGCAGCCCCTCTTTTTTTGGGGGGTGAGGGTTTCAAGACAGG  800

seq1  GTTTCTCTGTATAACCCTGGCTATCCTAGAACTCACTTTGTAGACCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTATAACCCTGGCTATCCTAGAACTCACTTTGTAGACCAGGC  850

seq1  TAGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGAT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTCCGAGTGCTGGGAT  900

seq1  TAAAGGCGGGTGCCACCATG-CCCGGCTC-GGGGGGCAGCCCCTCTTGAG  948
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  TAAAGGCGGGTGCCACCATGCCCCGGCTCGGGGGGGCAGCCCCTCTTGAG  950

seq1  GAAGAAGAATTAACATCAAAATACAAACAGCATCAGGGCAACTCACAACA  998
      ||||||||||||| |||||| ||| ||||||||||||   |||||| |||
seq2  GAAGAAGAATTAA-ATCAAATTAC-AACAGCATCAGG--CACTCAC-ACA  995

seq1  CCACACAATATAACAACACACATTATGTTATATTAATGCCATAAGGTATA  1048
      ||||||||||||   ||||||||||||||||||| |||||||||||||||
seq2  CCACACAATATA--CACACACATTATGTTATATT-ATGCCATAAGGTATA  1042

seq1  TGCACACACACCGTTT-GAGAAAAGAAAGGCAATTGACAGAAATG-ATCA  1096
      |||||||||| ||||| |||||||||| | ||||||||||||||| ||||
seq2  TGCACACACATCGTTTGGAGAAAAGAACGCCAATTGACAGAAATGAATCA  1092

seq1  AC-TCTGGAATGAAATTCGCACT  1118
      || |||| | || ||||||||||
seq2  ACTTCTGCATTG-AATTCGCACT  1114


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