BAC Information

Click to search

BAC

Clone NameB6Ng01-268C14
Chromosome4 (Build37)
Map Location 39,342,769 - 39,457,323
singlet/doubletdoublet
Overlap gene1700009N14Rik
Upstream geneLOC665520, LOC100039487
Downstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268C14.bB6Ng01-268C14.g
ACCGA071094GA071095
length1,1761,125
definitionB6Ng01-268C14.b B6Ng01-268C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,342,769 - 39,343,961)(39,456,200 - 39,457,323)
sequence
gaattctggagagaaaacagtaatctgacagaaagactgtctcccattcc
ttccttaaagctcggaatgtgacctaattatccctgcctgtaaacacaaa
ctataacatctcttgaaaaactcacatctgagaaacagaagagatgccat
ggtttggacagagctcctgtccccaccttctgatttgcagaagtccatgt
attaaaagcctattctaaaagtggtgctttggtgagctgaggaacctttg
ggaggtggagcctggtgggaaatccctttgccttcaaatgtatgtccctg
aggtgggtttggggacccaagcctagtcagtgtctctctctctctcttgt
ttcctgatgctggggttgttttctgttattgggtgtttacatctaacgtc
cttgcccaagaaatcacaccggtgggtttgcctaggcacagactgagact
gtaaaaccatgagttaaccatttcttctgggcaagttaactagtcacatg
ctttgtggtgatgacagaaagctggctaatccagaagctgagcaaacaca
ttcaactgattttgaatgctttggagaattaccagccatttgcatgagga
tgcctctgaagggggttggactatagttccatctcccttggtcagctgcc
ttctcataatacttgtagttagacaatggctggcacaacactgacatgaa
actccaccacactgacctgtagagagttgacacacttataaccccattct
ggactaggagacaaattgggactattttttttttcccttttggctttctg
tctaggaaacttttagattgtctcttgtcagcactttggaataagctagg
cagctaggagaaataagccaggtgaaaggcagaacattacattttccatg
tgctgagaatactggggcttggcagccagggacaaatgaattcctgcctg
tcaatttctgcctcagtgatgctgacattcttcctacctattaatttcca
tgaagactcaactgtggtgtgagctttactttcatataatactagattag
gatttgcatttttattgacatatttttccaacttatgttcagcttgctct
cttactctttcatgttaccatcactaacctactggggtttatctgggatc
tcagtacctttgccctatagaagact

gaattctcttactataaaaatacgtgtgtaatatttttattgtttcagga
ttttgtgtttataaaccaatctatccagaaaactgatcaattctttgctc
agagatttaggatgcccatgtctggagaaagtatcaccttgtcctgcttt
gttttagaagcaagaagtagcctcaggtccaggcaatagatgaataaact
tcaggcacacagctcagaacataaattaaaaatactttgaacttctaaag
gttaaaccacatggtttttgttttcatttttgttaccccccattcctttc
attacaatagctaacacagatggaaaccagctagttctaggaactgtgaa
cacaatacaggaaagcacaagacaaggaagaagaaccaggataaagttca
agaatcctcaatgagtaaaaatgtgataagtatttgaaattcaaaactca
ttatcatggctaatgcacaaaagtattttctagtaaactatgtcagttga
aaaggtaaggttttgttctcttgcatatgaagccagaatattctcttagg
agacagtggatacaagcaattcaacaatcaataaaatgtagttttagaaa
ctttgtagtgggaaagtatgaaaaaaaaaactgcattatctatgcaatga
ctctttaaaggggacatgctgttgtttctcagtggactcttgatagactg
gagttacacaaaagattttaatgtactgtcagcttgaaaactagaatgga
gcccagtgaaattttctggaaagtatagaagctcaataaaaaggagtcca
gtactgtggaggctgaactttatatgacctccagaggatgatgtagcaga
acaattatattgtagttttgagatttgtgatatgagggtgttagattaag
tctttgtcacttggtttaaaatactgaactctaaatgcagaaagacagcc
atccttttctatattgtgagactatcctaagtggctaagaaactgtattg
tcagtattcattattaacttcccattttttttctttgtgaacaaagaaaa
tgtagccctttacatgccatgatgctcagcaacagggtaacagttctaca
tttctttctgggttaagttattgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_39342769_39343961
seq2: B6Ng01-268C14.b_51_1226

seq1  GAATTCTGGAGAGAAAACAGTAATCTGACAGAAAGACTGTCTCCCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGAGAAAACAGTAATCTGACAGAAAGACTGTCTCCCATTCC  50

seq1  TTCCTTAAAGCTCGGAATGTGACCTAATTATCCCTGCCTGTAAACACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGCTCGGAATGTGACCTAATTATCCCTGCCTGTAAACACAAA  100

seq1  CTATAACATCTCTTGAAAAACTCACATCTGAGAAACAGAAGAGATGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACATCTCTTGAAAAACTCACATCTGAGAAACAGAAGAGATGCCAT  150

seq1  GGTTTGGACAGAGCTCCTGTCCCCACCTTCTGATTTGCAGAAGTCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGACAGAGCTCCTGTCCCCACCTTCTGATTTGCAGAAGTCCATGT  200

seq1  ATTAAAAGCCTATTCTAAAAGTGGTGCTTTGGTGAGCTGAGGAACCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGCCTATTCTAAAAGTGGTGCTTTGGTGAGCTGAGGAACCTTTG  250

seq1  GGAGGTGGAGCCTGGTGGGAAATCCCTTTGCCTTCAAATGTATGTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGAGCCTGGTGGGAAATCCCTTTGCCTTCAAATGTATGTCCCTG  300

seq1  AGGTGGGTTTGGGGACCCAAGCCTAGTCAGTGTCTCTCTCTCTCTCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTTTGGGGACCCAAGCCTAGTCAGTGTCTCTCTCTCTCTCTTGT  350

seq1  TTCCTGATGCTGGGGTTGTTTTCTGTTATTGGGTGTTTACATCTAACGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATGCTGGGGTTGTTTTCTGTTATTGGGTGTTTACATCTAACGTC  400

seq1  CTTGCCCAAGAAATCACACCGGTGGGTTTGCCTAGGCACAGACTGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCAAGAAATCACACCGGTGGGTTTGCCTAGGCACAGACTGAGACT  450

seq1  GTAAAACCATGAGTTAACCATTTCTTCTGGGCAAGTTAACTAGTCACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCATGAGTTAACCATTTCTTCTGGGCAAGTTAACTAGTCACATG  500

seq1  CTTTGTGGTGATGACAGAAAGCTGGCTAATCCAGAAGCTGAGCAAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGTGATGACAGAAAGCTGGCTAATCCAGAAGCTGAGCAAACACA  550

seq1  TTCAACTGATTTTGAATGCTTTGGAGAATTACCAGCCATTTGCATGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGATTTTGAATGCTTTGGAGAATTACCAGCCATTTGCATGAGGA  600

seq1  TGCCTCTGAAGGGGGTTGGACTATAGTTCCATCTCCCTTGGTCAGCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGAAGGGGGTTGGACTATAGTTCCATCTCCCTTGGTCAGCTGCC  650

seq1  TTCTCATAATACTTGTAGTTAGACAATGGCTGGCACAACACTGACATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATAATACTTGTAGTTAGACAATGGCTGGCACAACACTGACATGAA  700

seq1  ACTCCACCACACTGACCTGTAGAGAGTTGACACACTTATAACCCCATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCACACTGACCTGTAGAGAGTTGACACACTTATAACCCCATTCT  750

seq1  GGACTAGGAGACAAATTGGGACTATTTTTTTTTTCCCTTTTGGCTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGAGACAAATTGGGACTATTTTTTTTTTCCCTTTTGGCTTTCTG  800

seq1  TCTAGGAAACTTTTAGATTGTCTCTTGTCAGCACTTTGGAATAAGCTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAACTTTTAGATTGTCTCTTGTCAGCACTTTGGAATAAGCTAGG  850

seq1  CAGCTAGGAGAAATAAGCCAGGTGAAAGGCAGAACATTACATTTTCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGAGAAATAAGCCAGGTGAAAGGCAGAACATTACATTTTCCATG  900

seq1  TGCTGAGAATACTGGGGCTTGGCAGCCAGGGACAAATGAATTCCTGCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAATACTGGGGCTTGGCAGCCAGGGACAAATGAATTCCTGCCTG  950

seq1  TCAATTTCTGCCTCAGTGATGCTGACATTCTTCCTACCTATTAATTTCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTGCCTCAGTGATGCTGACATTCTTCCTACCTATTAATTTCCA  1000

seq1  TGAAAGAACTCAACTTGTGGTGTGAGCTTTTACTTTCATATAAAATACTA  1050
      ||||   ||||||| |||||||||||| |||||||||||||  |||||||
seq2  TGAA--GACTCAAC-TGTGGTGTGAGC-TTTACTTTCATAT--AATACTA  1044

seq1  GATTAGGAATTTTGCATTTTTA-TGACAATATTTTCCAACCTATG-TCAG  1098
      ||||||||  |||||||||||| |||||   ||||||||| |||| ||||
seq2  GATTAGGA--TTTGCATTTTTATTGACATATTTTTCCAACTTATGTTCAG  1092

seq1  CCTTTGCTCTCTTTCCTCTTTTTCATGTTACCCTTCAACCTAAACTACT-  1147
      |  ||||||||||    || |||||||||| || |||  |||| ||||| 
seq2  C--TTGCTCTCTT---ACTCTTTCATGTTA-CCATCA--CTAACCTACTG  1134

seq1  GGGTTTATCTGAGTTCTTCCAGTACCTTTTTGCCTAATAGAAGACT  1193
      ||||||||||| | |||  |||||||  ||||||  ||||||||||
seq2  GGGTTTATCTGGGATCT--CAGTACC--TTTGCCCTATAGAAGACT  1176


seq1: chr4_39456200_39457323
seq2: B6Ng01-268C14.g_67_1191 (reverse)

seq1  GACAATAACTTA--CCAGGAAGAAATGTAGAACTTGTTTCCTGTTGCTGA  48
      ||||||||||||  |||| |||||||||||||||  |  |||||||||||
seq2  GACAATAACTTAACCCAGAAAGAAATGTAGAACTGTTACCCTGTTGCTGA  50

seq1  GGCATCATTGGCATGT-AAGGGCTACATTTTCTTTGTTCACAAAGAAAAA  97
       |||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  -GCATCA-TGGCATGTAAAGGGCTACATTTTCTTTGTTCACAAAGAAAAA  98

seq1  AAAT-GGAAGTTAATAATGAATACTTGACAATACAGTTTCTTTAGCCACT  146
      |||| ||||||||||||||||||| ||||||||||||||| |||||||||
seq2  AAATGGGAAGTTAATAATGAATAC-TGACAATACAGTTTC-TTAGCCACT  146

seq1  TAGGATAGTCTCACAATATAG-AAAGGATGGCTGTCTTTCTGCATTTAGA  195
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGGATAGTCTCACAATATAGAAAAGGATGGCTGTCTTTCTGCATTTAGA  196

seq1  GTTCAGTATTTTAAACCAAGTGACAAAGACTTAATCTAACACCCTCATAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTATTTTAAACCAAGTGACAAAGACTTAATCTAACACCCTCATAT  246

seq1  CACAAATCTCAAAACTACAATATAATTGTTCTGCTACATCATCCTCTGGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCTCAAAACTACAATATAATTGTTCTGCTACATCATCCTCTGGA  296

seq1  GGTCATATAAAGTTCAGCCTCCACAGTACTGGACTCCTTTTTATTGAGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATATAAAGTTCAGCCTCCACAGTACTGGACTCCTTTTTATTGAGCT  346

seq1  TCTATACTTTCCAGAAAATTTCACTGGGCTCCATTCTAGTTTTCAAGCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACTTTCCAGAAAATTTCACTGGGCTCCATTCTAGTTTTCAAGCTG  396

seq1  ACAGTACATTAAAATCTTTTGTGTAACTCCAGTCTATCAAGAGTCCACTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACATTAAAATCTTTTGTGTAACTCCAGTCTATCAAGAGTCCACTG  446

seq1  AGAAACAACAGCATGTCCCCTTTAAAGAGTCATTGCATAGATAATGCAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACAGCATGTCCCCTTTAAAGAGTCATTGCATAGATAATGCAGT  496

seq1  TTTTTTTTTCATACTTTCCCACTACAAAGTTTCTAAAACTACATTTTATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCATACTTTCCCACTACAAAGTTTCTAAAACTACATTTTATT  546

seq1  GATTGTTGAATTGCTTGTATCCACTGTCTCCTAAGAGAATATTCTGGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGAATTGCTTGTATCCACTGTCTCCTAAGAGAATATTCTGGCTT  596

seq1  CATATGCAAGAGAACAAAACCTTACCTTTTCAACTGACATAGTTTACTAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAAGAGAACAAAACCTTACCTTTTCAACTGACATAGTTTACTAG  646

seq1  AAAATACTTTTGTGCATTAGCCATGATAATGAGTTTTGAATTTCAAATAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTTGTGCATTAGCCATGATAATGAGTTTTGAATTTCAAATAC  696

seq1  TTATCACATTTTTACTCATTGAGGATTCTTGAACTTTATCCTGGTTCTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACATTTTTACTCATTGAGGATTCTTGAACTTTATCCTGGTTCTTC  746

seq1  TTCCTTGTCTTGTGCTTTCCTGTATTGTGTTCACAGTTCCTAGAACTAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTCTTGTGCTTTCCTGTATTGTGTTCACAGTTCCTAGAACTAGC  796

seq1  TGGTTTCCATCTGTGTTAGCTATTGTAATGAAAGGAATGGGGGGTAACAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCATCTGTGTTAGCTATTGTAATGAAAGGAATGGGGGGTAACAA  846

seq1  AAATGAAAACAAAAACCATGTGGTTTAACCTTTAGAAGTTCAAAGTATTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAACAAAAACCATGTGGTTTAACCTTTAGAAGTTCAAAGTATTT  896

seq1  TTAATTTATGTTCTGAGCTGTGTGCCTGAAGTTTATTCATCTATTGCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATGTTCTGAGCTGTGTGCCTGAAGTTTATTCATCTATTGCCTG  946

seq1  GACCTGAGGCTACTTCTTGCTTCTAAAACAAAGCAGGACAAGGTGATACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAGGCTACTTCTTGCTTCTAAAACAAAGCAGGACAAGGTGATACT  996

seq1  TTCTCCAGACATGGGCATCCTAAATCTCTGAGCAAAGAATTGATCAGTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGACATGGGCATCCTAAATCTCTGAGCAAAGAATTGATCAGTTT  1046

seq1  TCTGGATAGATTGGTTTATAAACACAAAATCCTGAAACAATAAAAATATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATAGATTGGTTTATAAACACAAAATCCTGAAACAATAAAAATATT  1096

seq1  ACACACGTATTTTTATAGTAAGAGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  ACACACGTATTTTTATAGTAAGAGAATTC  1125


| Home | SequenceCutter | Blast | Download |