BAC Information

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BAC

Clone NameB6Ng01-269G05
Chromosome4 (Build37)
Map Location 33,777,972 - 33,779,158
singlet/doubletsinglet
Overlap genenone
Upstream geneMdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269G05.bB6Ng01-269G05.g
ACCGA072001GA072002
length8751,171
definitionB6Ng01-269G05.b B6Ng01-269G05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttgtatctattccctattttaaaattggattattttgtt
gttttgttttgtttgatatttggtttcttgagttccttatatatcttgga
cattatttctctactagatgtgaagttagtaaaaaaaaaaaaaatccttt
cctattctgtagactgacactttatactattgactattttagtttcatga
ggtctcgtttattaactgttcatcttagtgcctgagctattggtgttctt
gtcagaaagttatctcctgtgccaatggattcaatgttattgccactttt
tcttctatcagattcagaggatctggtaaatgttgaggtctttgatcccc
ttggacttgagttttatgcaaggtgatacatatggatctagttgcattct
tctacatgcagtcatccagtttgaccagcaccatttgttaaagatgttgt
cttttttatactgcatatttctggtttctttatcaaaagtcaggtgtcca
taggtatgtggatatatgccttggtcttaaattcaattccattcaccaat
gtgtctatttttatgccaataccatgtctttcttttctttctttctttct
ttctttctttctttctttctttctttctttctttcttccttccttccttc
cttccttccgtccatctgtctgtctgtctttctttttcgttcgttcgttc
gttcattcgttcattttctgagacagggtttctctgtatagctctggctg
tcctagaactcactttgtagaccaggctggccttgaactcagaaatctgc
ctgccactgcctcccgagtgctgggattaaaggcgtgcaccaccacgccc
agctcgctcatccttccttccttcc
gaattccaggtcagcctggactacagaacaagaccttgccttgtaaaaaa
aagagaactcataggaatggcatggtggtttggtttggtttaatgttctg
ttttgttttgtcttgtctttgtcattttcggttttgttttctcggttcaa
ttgccctgccttgtggaggttacattggcagaggagccaagcttcatctg
cttcagcccctattccccgtggctctgcctctgccaaggctggagcgtga
agtcagtgcttgcttccctagggcttccctgacataggggaccttgctgt
aactttttatctcacctctgagaaatcctgagttctgtaccgattcaaca
atgaatcctgactctattaaagcaacttggtgcttaatgtatttccctta
agaaggctgcttggggaccctaatgccctggctgttgcctaggccctttg
ccttgttaacatggtaattcctgtgcccagagagtcgaagaatcatcaac
taacttatcaaagttagttatgctaaatgaatcccaaaaacaaagaaacc
attctagttacctaacattgctgtgatagagcccattgctctgggcagaa
gaacttgagaggaagggcttgattgcccagcccagcctgcttccttataa
accctaggaccactcccccagggtgacacccctgccccgacagtgggctg
tcaatcatcaatcaagaaaatgtcctccagagatggccatgccaacctga
tggtggcaattcctcattaagatcccctctttccaggtagctctagttta
tgacaagttgacaaaaactgaccagcacaccaacagaccaaaaagggcta
taatctctttatgtggcaaaataaaacctaaattttacttggcaaaaatt
aaataatagtaaagttaaggagaattatataccaactgccacgaaaggcc
tgtgagtccaaatcagctctcaattcaacgggatgggaatctgaacaggg
cgatatttctgtagataactaaggaaatactgttttttaaaaataatatc
tatggacagggaagatgtagaaggtagttatatctagtgatgaaacctat
aaccatagtatcttggttttgctttgcccctctgaacgtatgccattaga
tgttgttgttagaagaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_33777972_33779158
seq2: B6Ng01-269G05.g_68_1238 (reverse)

seq1  AATTTTCTTCTTACAA-AACATACTTATTGCATATGTTTTTAGAGGGGCA  49
      ||||||||||| |||| ||||| || || ||||| |  || |||||||| 
seq2  AATTTTCTTCTAACAACAACAT-CTAATGGCATACG--TTCAGAGGGGC-  46

seq1  AAAGCAAAAACAAGATACTAATGTGTTATAGTTTCTATCACTAAGATATA  99
      ||||||||| ||||||||| ||| ||||||| ||  |||||| |||||||
seq2  AAAGCAAAACCAAGATACT-ATG-GTTATAGGTTTCATCACT-AGATATA  93

seq1  ACTACTTTCTCCCATCTTCCCCTGTCCATTAGAATATTATTTTTTAAAAA  149
      ||||| ||||  |||||| ||||||||| ||| |||||| ||||||||||
seq2  ACTACCTTCT-ACATCTT-CCCTGTCCA-TAG-ATATTA-TTTTTAAAAA  138

seq1  ACAGTATTTCCTTACCTTTATCTACAGAAATTATCGCCCTGTTCAGATTC  199
      ||||||||||||||   ||||||||||||| |||||||||||||||||||
seq2  ACAGTATTTCCTTA--GTTATCTACAGAAA-TATCGCCCTGTTCAGATTC  185

seq1  CCATCCCGTTGAATTTGAGAGCTGATTTGGACTCACAGGCCTTTCGTGGC  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCATCCCGTTGAA-TTGAGAGCTGATTTGGACTCACAGGCCTTTCGTGGC  234

seq1  AGTTTGGTATATAATTCTCCTTAACTTTACTATTATTTAATTTTTGCCAA  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TTGGTATATAATTCTCCTTAACTTTACTATTATTTAATTTTTGCCAA  283

seq1  GTAAAATTTAGGTTTTATTTTGCCACATAAAGAGATTATAGCCCTTTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTAGGTTTTATTTTGCCACATAAAGAGATTATAGCCCTTTTTG  333

seq1  GTCTGTTGGTGTGCTGGTCAGTTTTTGTCAACTTGTCATAAACTAGAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTGGTGTGCTGGTCAGTTTTTGTCAACTTGTCATAAACTAGAGCT  383

seq1  ACCTGGAAAGAGGGGATCTTAATGAGGAATTGCCACCATCAGGTTGGCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAAGAGGGGATCTTAATGAGGAATTGCCACCATCAGGTTGGCAT  433

seq1  GGCCATCTCTGGAGGACATTTTCTTGATTGATGATTGACAGCCCACTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTCTGGAGGACATTTTCTTGATTGATGATTGACAGCCCACTGTC  483

seq1  GGGGCAGGGGTGTCACCCTGGGGGAGTGGTCCTAGGGTTTATAAGGAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGGGTGTCACCCTGGGGGAGTGGTCCTAGGGTTTATAAGGAAGC  533

seq1  AGGCTGGGCTGGGCAATCAAGCCCTTCCTCTCAAGTTCTTCTGCCCAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGCTGGGCAATCAAGCCCTTCCTCTCAAGTTCTTCTGCCCAGAG  583

seq1  CAATGGGCTCTATCACAGCAATGTTAGGTAACTAGAATGGTTTCTTTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCTCTATCACAGCAATGTTAGGTAACTAGAATGGTTTCTTTGTT  633

seq1  TTTGGGATTCATTTAGCATAACTAACTTTGATAAGTTAGTTGATGATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATTCATTTAGCATAACTAACTTTGATAAGTTAGTTGATGATTCT  683

seq1  TCGACTCTCTGGGCACAGGAATTACCATGTTAACAAGGCAAAGGGCCTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTCTCTGGGCACAGGAATTACCATGTTAACAAGGCAAAGGGCCTAG  733

seq1  GCAACAGCCAGGGCATTAGGGTCCCCAAGCAGCCTTCTTAAGGGAAATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCCAGGGCATTAGGGTCCCCAAGCAGCCTTCTTAAGGGAAATAC  783

seq1  ATTAAGCACCAAGTTGCTTTAATAGAGTCAGGATTCATTGTTGAATCGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCACCAAGTTGCTTTAATAGAGTCAGGATTCATTGTTGAATCGGT  833

seq1  ACAGAACTCAGGATTTCTCAGAGGTGAGATAAAAAGTTACAGCAAGGTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCAGGATTTCTCAGAGGTGAGATAAAAAGTTACAGCAAGGTCC  883

seq1  CCTATGTCAGGGAAGCCCTAGGGAAGCAAGCACTGACTTCACGCTCCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTCAGGGAAGCCCTAGGGAAGCAAGCACTGACTTCACGCTCCAGC  933

seq1  CTTGGCAGAGGCAGAGCCACGGGGAATAGGGGCTGAAGCAGATGAAGCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGAGGCAGAGCCACGGGGAATAGGGGCTGAAGCAGATGAAGCTT  983

seq1  GGCTCCTCTGCCAATGTAACCTCCACAAGGCAGGGCAATTGAACCGAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCTGCCAATGTAACCTCCACAAGGCAGGGCAATTGAACCGAGAA  1033

seq1  AACAAAACCGAAAATGACAAAGACAAGACAAAACAAAACAGAACATTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCGAAAATGACAAAGACAAGACAAAACAAAACAGAACATTAAA  1083

seq1  CCAAACCAAACCACCATGCCATTCCTATGAGTTCTCTTTTTTTTACAAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAACCACCATGCCATTCCTATGAGTTCTCTTTTTTTTACAAGG  1133

seq1  CAAGGTCTTGTTCTGTAGTCCAGGCTGACCTGGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTTGTTCTGTAGTCCAGGCTGACCTGGAATTC  1171