BAC Information

Click to search

BAC

Clone NameB6Ng01-269J12
Chromosome4 (Build37)
Map Location 68,790,851 - 68,791,731
singlet/doubletsinglet
Overlap genenone
Upstream geneTcp1-ps1, Dbc1
Downstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269J12.bB6Ng01-269J12.g
ACCGA072147GA072148
length1,169881
definitionB6Ng01-269J12.b B6Ng01-269J12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
tttaacatccttaatcatcagggaaatacaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaatactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattgtacatagtagtaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaactgtaagaaggacacatgctcctctacg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacaaaaatgtggtacatttacacaatgga
gtactactcagctattgaaaagaatgaacttatgaaattcctaggcaaat
ggatggatctggagggtatcatcctgagtgaagtaagccaatcagaaagg
aactcgcacaatatgtactcactgataagtggatattagcccagaaactt
agtatagtgagatataaggtacaatttgcaaaacacatgaaactgaagaa
gaacaaagaccaaagtgtggacactttcccccttcttagaattggaaaca
atcacccattcaaggagttacagagacaaaatttggagctgagacaaaag
gatgagtcaagagactgccatatccaggtatccatcccataattagcctc
caaacgatgacaccattgcatacactagcaagtgtttgttgtaaggaccg
tgatatagctgtctcttgtgagactaggccagggcctagcaaacacagaa
gtggatgctcacagtcaactattggatggatcacagggcccccaatggag
gagctagagaaagtatacaaggagctaaagaggtctgcaaccctgtaggt
tcaacatatgaactaaccaatacctggactcttgactctagctgcatatg
tatcaaaatatgggctagtcggcatcactggaaaagagaggccactgaca
tgcaactttatatgcccagttacaggaacggcaggctaaaaacatggaat
tggggtatagggggaagtg

gaattcagcctcctcgacagctcctgagcataggataattgcaatataat
taatgaattaaaaagaatgaaatgttttaagtgccttcaatattcccttt
cctataattatcaacaggaaacatattcattaacaatcttgtgctgacag
gccccaggctctggtaacctacctaagcttccaacaagaaaatgagtaga
tggcctccccaggtcatgcctcccagttttatggatgacaagccaaagct
agactgcaccctggaaactgtttactagatcaggtgcctgcctctactct
tcttcttcctttttttaaattgtaaatatcactttatttttccctccaat
tttttattaggtatttacttcatttacactttaaatgctatcacaaaagt
cccctataccccccttttctcccctacccacccactcctacttcctggcc
ctggtatttccctgtactggggcatataaagtttgcaagaccaaggggcc
tctcttcccaatgatggtcttctttagggacacctttattagtttcaagt
gacaaaatgattctgttggcctccccaagacctatttctctcccacgctc
aaggaaacacaatactaattgtggccgctattaagtttctcattgctcat
attgtgtttcctttagtttcagctgaaaaatgatgaatcactaattcatt
catatataatatccactaaggtcttttaatgttgtactcactgactctca
tctatgatggagagtcataatacacttagagcagcctaatatatctggtc
cagataaatatctttgatataattttacttgatttggggagggattatat
atatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_68790851_68791731
seq2: B6Ng01-269J12.g_63_943 (reverse)

seq1  TATATATATATATATATATATATATATATATATATAATCCCTCCCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATAATCCCTCCCCAAAT  50

seq1  CAAGTAAAATTATATCAAAGATATTTATCTGGACCAGATATATTAGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAATTATATCAAAGATATTTATCTGGACCAGATATATTAGGCTG  100

seq1  CTCTAAGTGTATTATGACTCTCCATCATAGATGAGAGTCAGTGAGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTGTATTATGACTCTCCATCATAGATGAGAGTCAGTGAGTACAA  150

seq1  CATTAAAAGACCTTAGTGGATATTATATATGAATGAATTAGTGATTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGACCTTAGTGGATATTATATATGAATGAATTAGTGATTCATC  200

seq1  ATTTTTCAGCTGAAACTAAAGGAAACACAATATGAGCAATGAGAAACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGCTGAAACTAAAGGAAACACAATATGAGCAATGAGAAACTTA  250

seq1  ATAGCGGCCACAATTAGTATTGTGTTTCCTTGAGCGTGGGAGAGAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGGCCACAATTAGTATTGTGTTTCCTTGAGCGTGGGAGAGAAATAG  300

seq1  GTCTTGGGGAGGCCAACAGAATCATTTTGTCACTTGAAACTAATAAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGGAGGCCAACAGAATCATTTTGTCACTTGAAACTAATAAAGGT  350

seq1  GTCCCTAAAGAAGACCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAAAGAAGACCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAA  400

seq1  CTTTATATGCCCCAGTACAGGGAAATACCAGGGCCAGGAAGTAGGAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGCCCCAGTACAGGGAAATACCAGGGCCAGGAAGTAGGAGTGG  450

seq1  GTGGGTAGGGGAGAAAAGGGGGGTATAGGGGACTTTTGTGATAGCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGGGGAGAAAAGGGGGGTATAGGGGACTTTTGTGATAGCATTTA  500

seq1  AAGTGTAAATGAAGTAAATACCTAATAAAAAATTGGAGGGAAAAATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAAATGAAGTAAATACCTAATAAAAAATTGGAGGGAAAAATAAAG  550

seq1  TGATATTTACAATTTAAAAAAAGGAAGAAGAAGAGTAGAGGCAGGCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTACAATTTAAAAAAAGGAAGAAGAAGAGTAGAGGCAGGCACCT  600

seq1  GATCTAGTAAACAGTTTCCAGGGTGCAGTCTAGCTTTGGCTTGTCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGTAAACAGTTTCCAGGGTGCAGTCTAGCTTTGGCTTGTCATCCA  650

seq1  TAAAACTGGGAGGCATGACCTGGGGAGGCCATCTACTCATTTTCTTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGGGAGGCATGACCTGGGGAGGCCATCTACTCATTTTCTTGTTG  700

seq1  GAAGCTTAGGTAGGTTACCAGAGCCTGGGGCCTGTCAGCACAAGATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTAGGTAGGTTACCAGAGCCTGGGGCCTGTCAGCACAAGATTGTT  750

seq1  AATGAATATGTTTCCTGTTGATAATTATAGGAAAGGGAATATTGAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATGTTTCCTGTTGATAATTATAGGAAAGGGAATATTGAAGGCA  800

seq1  CTTAAAACATTTCATTCTTTTTAATTCATTAATTATATTGCAATTATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACATTTCATTCTTTTTAATTCATTAATTATATTGCAATTATCCT  850

seq1  ATGCTCAGGAGCTGTCGAGGAGGCTGAATTC  881
      |||||||||||||||||||||||||||||||
seq2  ATGCTCAGGAGCTGTCGAGGAGGCTGAATTC  881


| Home | SequenceCutter | Blast | Download |