BAC Information

Click to search

BAC

Clone NameB6Ng01-270D09
Chromosome4 (Build37)
Map Location 145,418,911 - 145,486,699
singlet/doubletdoublet
Overlap gene1700029I01Rik, LOC236069, LOC384084
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270D09.bB6Ng01-270D09.g
ACCGA072612GA072613
length6351,158
definitionB6Ng01-270D09.b B6Ng01-270D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,486,070 - 145,486,699)(145,418,911 - 145,420,036)
sequence
gaattcaacaagaagttcattcttacccacaaacaacagattgttgtaat
tctccaacatcacatccatgtacaatgacctctgagcaaaactgagacat
tcccattcctccagtgagaagtccaaggccacgtccttgaaagttaacag
accctgtaatggaaaactacctacttgatactggacaaaaatgtttttct
acttaaaaaaagaagtaattaagatatccttttttgggggctggtgagat
ggctcagtgggtaagagcacccgactgctcttccgaaggtccagagttca
aatcccagcaaccacatggtggctcacaaccatctgtaacatgatctgac
tcccttttctggtgtgtctgaagacagcaacagtgtacttacatataata
ataaataaatctttaaaaaaaaaaaaagatatcctttttttgctgtgtgt
ggtggcaaacgcctttaatctcagcacttgggaggcagaggtaggcagat
ttctgaatgcaaggccagcctggtctacagagtgagttccaggataggat
agccagggctgcacagagaaaccctgtctcaaaaaaacaaaacaaaacaa
aaaacccaaaacaacaactacaaaaagatttcctt
gaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgc
tttactttcaaaggcagtctgaggattcatcagagaattcatacaggaga
gaaaccttacaaatgcactgaatgtgacaaatcctttactgaaaagggca
aactgagaattcatcagagaattcataaaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttactgaaaaaggccatcagagaattcatac
aggagagatagcttacaaatagtttgtatgtgacaaatacaatacaatgt
cagtctgagaaatcatcagtttttaatacagtagagaatatttataaatg
aagtgaacgagacaatcctttaccaagatatatcatcttaaaaatcatta
gagaatacttacagaagagaaacttttcaattatatcgaaggtatgaatc
ctttactcttggcctatttcctagaatgttaacagtgaatacttacagga
tacaaacttaactcatgcattgtatgaagaaatatctttgacttcatttc
aggtcaaagagaatatctaataactttttaggtgaaagtatttctgttgg
ggaaagtgtggcctgtgttttattcacgttctattcttgacaacaattga
ggctccacactagagaattagtatgattatgaaaatcatgtgaaaacttt
catgcaatgttcaaatcttaaataatgtcaactatttttttgcttgaaga
aactctgaaaatgtaaaaatgtagaaagcttttcatgacaccttttttac
ttgttcacccttaaatgttacaagatgaagacaagttgggaagtgaggag
atattattgtgtaacacattcattgagacagaaataatccatttcaaaag
gaaactatttaaaggtctttaatgcagtcctcaaaatatctaataaaact
ggtaacattctgtatatttaattcaaatgagccaattgagaaaattatac
ttaaaagatatctggcaactgagccacccagacagcatattctttatcct
ataaaatatgcttacagatgttagtgtgctttcgagtaattccagttaat
tattattcttctccaaatgctggctcacagtataggatacaactggatca
ttatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145486070_145486699
seq2: B6Ng01-270D09.b_44_678 (reverse)

seq1  AAGGAAATCTTTTTGTTGTTGTTGTTTTGGGTTTTTTTGTTTTGTTTTGT  50
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AAGGAAATCTTTTTGTAGTTGTTGTTTTGGG-TTTTTTGTTTTGTTTTGT  49

seq1  TTTTCTGAGACAGGGTTTCTCTGTGCAGCCCTGGCTATCCTATCCTGGAA  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTCTGTGCAGCCCTGGCTATCCTATCCTGGAA  99

seq1  CTCACTCTGTAGACCAGGCTGGCCTTGCACTCAGAAATCTGCCTGCCTCT  150
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  CTCACTCTGTAGACCAGGCTGGCCTTGCATTCAGAAATCTGCCTACCTCT  149

seq1  GCCTCCCAAGTGCTGAGATTAAAGGCGTTTGCCACCACACACAGCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGTGCTGAGATTAAAGGCGTTTGCCACCACACACAGCAAAAA  199

seq1  AAGGATA------TTTTTTTTTAAAGATTTATTTATTATTATATGTAAGT  244
      |||||||      |||||||||||||||||||||||||||||||||||||
seq2  AAGGATATCTTTTTTTTTTTTTAAAGATTTATTTATTATTATATGTAAGT  249

seq1  ACACTGTTGCTGTCTTCAGACACACCAGAAAAGGGAGTCAGATCATGTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTGCTGTCTTCAGACACACCAGAAAAGGGAGTCAGATCATGTTA  299

seq1  CAGATGGTTGTGAGCCACCATGTGGTTACTGGAATTTGAACTCTGGACCT  344
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCT  349

seq1  TCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCC  399

seq1  CAAAAAAGGATATCTTAATTACTTCTTTTTTTAAGTAGAAAAACATTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGGATATCTTAATTACTTCTTTTTTTAAGTAGAAAAACATTTTT  449

seq1  GTCCAGTATCAAGTAGGTAGTTTTCCATTACAGGGTCTGTTAACTTTCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTATCAAGTAGGTAGTTTTCCATTACAGGGTCTGTTAACTTTCAA  499

seq1  GGACGTGGCCTTGGACTTCTCACTGGAGGAATGGGAATGTCTCAGTTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGGCCTTGGACTTCTCACTGGAGGAATGGGAATGTCTCAGTTTTG  549

seq1  CTCAGAGGTCATTGTACATGGATGTGATGTTGGAGAATTACAACAATCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTCATTGTACATGGATGTGATGTTGGAGAATTACAACAATCTG  599

seq1  TTGTTTGTGGGTAAGAATGAACTTCTTGTTGAATTC  630
      ||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTGGGTAAGAATGAACTTCTTGTTGAATTC  635

seq1: chr4_145418911_145420036
seq2: B6Ng01-270D09.g_92_1221

seq1  ATGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTC  50

seq1  ATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGAC  100

seq1  AAATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAA  150

seq1  AGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAA  200

seq1  AAGGCCATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTA  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTA  250

seq1  TGTGACAGATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATA  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATA  300

seq1  CAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGA  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGTAGAGAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGA  350

seq1  TATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTC  400

seq1  AATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATG  450

seq1  TTAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAA  500

seq1  GAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTT  550

seq1  TAGGGGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACG  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACG  600

seq1  TTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATT  650

seq1  ATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGT  700

seq1  CAACTA-TTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAG  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAG  750

seq1  CTTTTCATGACACC-TTTTTACTTGTTCACCCTTAAATGTTACAAGATGA  798
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGACACCTTTTTTACTTGTTCACCCTTAAATGTTACAAGATGA  800

seq1  AGACAAGTTGGGAAGTGAGGAGATATTATTGTGTACCACATTCATTGAGA  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGACAAGTTGGGAAGTGAGGAGATATTATTGTGTAACACATTCATTGAGA  850

seq1  CAGAAATAATCCATTTCAAAAGGAAACTATTT-AAGGTCTTTAATGCAGT  897
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGAAATAATCCATTTCAAAAGGAAACTATTTAAAGGTCTTTAATGCAGT  900

seq1  CCTCAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAATTCAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAATTCAAAT  950

seq1  GAGCCAATTGAGAAAAATTATACTTAAAAGAATATCTGGCAAACTGAGCC  997
      |||||||||||| ||||||||||||||||| ||||||||| |||||||||
seq2  GAGCCAATTGAG-AAAATTATACTTAAAAG-ATATCTGGC-AACTGAGCC  997

seq1  ACCCAGACAGCATATTCTTTATCCTAT-AAATATGCTTACAGATGTTAAG  1046
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  ACCCAGACAGCATATTCTTTATCCTATAAAATATGCTTACAGATGTT-AG  1046

seq1  TGTGC-TTCGAGTA--TTCAG-TAATAATAATTCTTCT-CAAATGCTTGG  1091
      ||||| ||||||||  | ||| |||| || |||||||| ||||||| |||
seq2  TGTGCTTTCGAGTAATTCCAGTTAATTATTATTCTTCTCCAAATGC-TGG  1095

seq1  TTCACATTATAGGATAACAACT-GATCATTATTTCC  1126
       ||||| |||||||| |||||| |||||||||||||
seq2  CTCACAGTATAGGAT-ACAACTGGATCATTATTTCC  1130