BAC Information

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BAC

Clone NameB6Ng01-270I15
Chromosome4 (Build37)
Map Location 67,429,998 - 67,538,525
singlet/doubletdoublet
Overlap genenone
Upstream geneTlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270I15.bB6Ng01-270I15.g
ACCGA072853GA072854
length1,0271,097
definitionB6Ng01-270I15.b B6Ng01-270I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,429,998 - 67,431,031)(67,537,438 - 67,538,525)
sequence
gaattcctaatcctgttcgtcattctgtctcactggctttctgacctcca
ccatatggacatggcctcatctgctaactgaaatgacttttctgtcataa
taccgacttcaatttgtggtctctgtcaggcatatcgtgttgaatcaccc
ttgtctcaactctgtcaccacctacacgcataaatggcaatcagtctcaa
caattgcatttagatgagaaatatgggatcataacagcagccttattcat
cagtgttaagattggagcctctacagttatgacttaaaacattcacatag
gacaatattatggagtacaggattggtgaacagtgagttctgaaatacct
tcttgaaaaatgccaaaaatcacaacatattaaaaaagaagagttagaaa
aataatagaagattatgagggtaatgatctattgcccactgatttttttt
tattcctctgcctagaaagactttatctcagttcctcttccaatacaaac
ttttagattgaaaacttttcaagcacatctgcgtctagaatagtatctga
tgtatctatcacaagtgcttagcagaaacttaatcattcaagtcacatct
ttcttcaagtaaaacaggtcaatatagatgattgtaagagagttttcctc
attttctgcatactcaaaaatcaattattttatagcttttctataagggc
ttaaacatgttgtgcataaaatcacttatagcaatgactataggtttaga
ttattttatactatagatccacttcttattcaataatcttgagtctacct
ttactcgagatcactaattctttgacaagagttggcattagcattgtcct
ttttaggggtcaaataggatccattttctaaatgatgagtcctttgcatt
aaatgaaaccttagcagaaaagattgatatcagaacataacaaaaagcca
tctgcttattctgtaagctgatcacggaagtcccccagatcatgcacgtc
tagtctacatccattacctcagaatga

gaattcattgtcctcaactaacagcattgttttggaaatgtaaaaaggta
ggttctagttggagaaaatgattttcactagatagagaatatgttgtcct
tagctcacatactccatacatagacacatattctctccctctccactctc
tctttcatgtgtctttcatttccacaacgaataaagttgaatacatattt
ctaccacctttattttctgcacatgcatgaaagcattatttgaagaacct
tctgaaaccatcaaattaaacattcaatcctttagattggttctctcaag
tatttgagttattgtacaccaaatgtaattaatacagtctattagatcta
gagaaagatcatcactgctgaaaagaaaccagactgtgaagattcaaaca
ttttaaagtggcttcaaaaggttaggagttttttgaaaggagtttagtgg
gtaattatgatgggtgatcaaaacattggaatgccaaaaagaatgaagtc
cagaatcatgagaatttcagtgagaataatgaatttattgggaataaatt
ggaggccattcacattagatttaggccaagaattcttccccatttagtct
gtgtcataatactttgaataaggataaattacaagtattggttaattaat
ttaatttctgtggctggctactttaagccagagttacagtaagcatcaag
agtataaggatttgagtaatatgtgaagtgaccacagacacaatgagttt
gaatttgtagtaaccagtggtttgattattcaagataagcatcattaaat
tgaagccacatactagaaagtaagaattagaagacgtgatgtgatcgata
gttgaggaacattgttacaccaaaacaacacagctgttatgatctggacc
ttacaactgctttgatggcctgtgcaagatgccacaaagactggccttca
ttaacatcctatagttataagggaagacctcaaaaaggcctcccataccc
tccttgagaagtataagagttaatggttacctcctggggggaggagatca
tgaagtccccaccctcctgcccaggtatttatagccatagatattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67429998_67431031
seq2: B6Ng01-270I15.b_43_1069

seq1  GAATTCCTAATCCTGTTCGTCATTCTGTCTCACTGGCTTTCTGACCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATCCTGTTCGTCATTCTGTCTCACTGGCTTTCTGACCTCCA  50

seq1  CCATATGGACATGGCCTCATCTGCTAACTGAAATGACTTTTCTGTCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGACATGGCCTCATCTGCTAACTGAAATGACTTTTCTGTCATAA  100

seq1  TACCGACTTCAATTTGTGGTCTCTGTCAGGCATATCGTGTTGAATCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGACTTCAATTTGTGGTCTCTGTCAGGCATATCGTGTTGAATCACCC  150

seq1  TTGTCTCAACTCTGTCACCACCTACACGCATAAATGGCAATCAGTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAACTCTGTCACCACCTACACGCATAAATGGCAATCAGTCTCAA  200

seq1  CAATTGCATTTAGATGAGAAATATGGGATCATAACAGCAGCCTTATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCATTTAGATGAGAAATATGGGATCATAACAGCAGCCTTATTCAT  250

seq1  CAGTGTTAAGATTGGAGCCTCTACAGTTATGACTTAAAACATTCACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAAGATTGGAGCCTCTACAGTTATGACTTAAAACATTCACATAG  300

seq1  GACAATATTATGGAGTACAGGATTGGTGAACAGTGAGTTCTGAAATACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATATTATGGAGTACAGGATTGGTGAACAGTGAGTTCTGAAATACCT  350

seq1  TCTTGAAAAATGCCAAAAATCACAACATATTAAAAAAGAAGAGTTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAATGCCAAAAATCACAACATATTAAAAAAGAAGAGTTAGAAA  400

seq1  AATAATAGAAGATTATGAGGGTAATGATCTATTGCCCACTGATTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGAAGATTATGAGGGTAATGATCTATTGCCCACTGATTTTTTTT  450

seq1  TATTCCTCTGCCTAGAAAGACTTTATCTCAGTTCCTCTTCCAATACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCTGCCTAGAAAGACTTTATCTCAGTTCCTCTTCCAATACAAAC  500

seq1  TTTTAGATTGAAAACTTTTCAAGCACATCTGCGTCTAGAATAGTATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTGAAAACTTTTCAAGCACATCTGCGTCTAGAATAGTATCTGA  550

seq1  TGTATCTATCACAAGTGCTTAGCAGAAACTTAATCATTCAAGTCACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTATCACAAGTGCTTAGCAGAAACTTAATCATTCAAGTCACATCT  600

seq1  TTCTTCAAGTAAAACAGGTCAATATAGATGATTGTAAGAGAGTTTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAGTAAAACAGGTCAATATAGATGATTGTAAGAGAGTTTTCCTC  650

seq1  ATTTTCTGCATACTCAAAAATCAATTATTTTATAGCTTTTCTATAAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCATACTCAAAAATCAATTATTTTATAGCTTTTCTATAAGGGC  700

seq1  TTAAACATGTTGTGCATAAAATCACTTATAGCAATGACTATAGGTTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATGTTGTGCATAAAATCACTTATAGCAATGACTATAGGTTTAGA  750

seq1  TTATTTTATACTATAGATCCACTTCTTATTCAATAATCTTGAGTCTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATACTATAGATCCACTTCTTATTCAATAATCTTGAGTCTACCT  800

seq1  TTACTCGAGATCACTAATTCTTTGACAAGAGTTGGCATTAGCATTGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGAGATCACTAATTCTTTGACAAGAGTTGGCATTAGCATTGTCCT  850

seq1  TTTTAGGGGTCAAATAGGATCCATTTTCTAAATGATGAGTCCTTTGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGGTCAAATAGGATCCATTTTCTAAATGATGAGTCCTTTGCATT  900

seq1  AAATGAAACCTTAGCAGGAAAAGATTGATAATCAGAACATAACAAAAAGC  950
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  AAATGAAACCTTAGCA-GAAAAGATTGAT-ATCAGAACATAACAAAAAGC  948

seq1  CATCTGCTTATTCTGTAAGCTGAATCACGGAAGTCCCCCAGATCATTGCA  1000
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  CATCTGCTTATTCTGTAAGCTG-ATCACGGAAGTCCCCCAGATCA-TGCA  996

seq1  CGTCTAAGTCTTAACATCCATTACCTCAGAATGA  1034
      ||||| |||||  |||||||||||||||||||||
seq2  CGTCT-AGTCT--ACATCCATTACCTCAGAATGA  1027


seq1: chr4_67537438_67538525
seq2: B6Ng01-270I15.g_64_1160 (reverse)

seq1  GTAATATCTTAATGCCTATAAATACCT-GGCA-GAGG--TGGGACTTCAT  46
      |||||||||  ||| |||||||||||| |||| ||||   ||||||||||
seq2  GTAATATCT--ATGGCTATAAATACCTGGGCAGGAGGGTGGGGACTTCAT  48

seq1  GATCTCCTCCCCAGA----GTAACCATTAACTTCTTATACTTCCTCAAGG  92
      ||||||||||||  |    |||||||||||| |||||||||| |||||||
seq2  GATCTCCTCCCCCCAGGAGGTAACCATTAAC-TCTTATACTT-CTCAAGG  96

seq1  A-GGTATGGGA-GCCTTTTTGA-GTCTTCCCTTAT-ACTATAGGATGTTA  138
      | ||||||||| |||||||||| |||||||||||| ||||||||||||||
seq2  AGGGTATGGGAGGCCTTTTTGAGGTCTTCCCTTATAACTATAGGATGTTA  146

seq1  ATGAA-GCCAGTCTTTTGTGCATCTTGCACAGGCCATCAAAGCAGTTGTA  187
      ||||| ||||||||||   |||||||||||||||||||||||||||||||
seq2  ATGAAGGCCAGTCTTTGTGGCATCTTGCACAGGCCATCAAAGCAGTTGTA  196

seq1  AGGTCCAGATCATAACAGCTGTGTTGTTTTGGTGTAACAATGTTCCTCAA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGATCATAACAGCTGTGTTGTTTTGGTGTAACAATGTTCCTCAA  246

seq1  CTATCGATCACATCACGTCTTCTAATTCTTACTTTCTAGTATGTGGCTTC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGATCACATCACGTCTTCTAATTCTTACTTTCTAGTATGTGGCTTC  296

seq1  AATTTAATGATGCTTATCTTGAATAATCAAACCACTGGTTACTACAAATT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATGATGCTTATCTTGAATAATCAAACCACTGGTTACTACAAATT  346

seq1  CAAACTCATTGTGTCTGTGGTCACTTCACATATTACTCAAATCCTTATAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCATTGTGTCTGTGGTCACTTCACATATTACTCAAATCCTTATAC  396

seq1  TCTTGATGCTTACTGTAACTCTGGCTTAAAGTAGCCAGCCACAGAAATTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGCTTACTGTAACTCTGGCTTAAAGTAGCCAGCCACAGAAATTA  446

seq1  AATTAATTAACCAATACTTGTAATTTATCCTTATTCAAAGTATTATGACA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAACCAATACTTGTAATTTATCCTTATTCAAAGTATTATGACA  496

seq1  CAGACTAAATGGGGAAGAATTCTTGGCCTAAATCTAATGTGAATGGCCTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAAATGGGGAAGAATTCTTGGCCTAAATCTAATGTGAATGGCCTC  546

seq1  CAATTTATTCCCAATAAATTCATTATTCTCACTGAAATTCTCATGATTCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATTCCCAATAAATTCATTATTCTCACTGAAATTCTCATGATTCT  596

seq1  GGACTTCATTCTTTTTGGCATTCCAATGTTTTGATCACCCATCATAATTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCATTCTTTTTGGCATTCCAATGTTTTGATCACCCATCATAATTA  646

seq1  CCCACTAAACTCCTTTCAAAAAACTCCTAACCTTTTGAAGCCACTTTAAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAAACTCCTTTCAAAAAACTCCTAACCTTTTGAAGCCACTTTAAA  696

seq1  ATGTTTGAATCTTCACAGTCTGGTTTCTTTTCAGCAGTGATGATCTTTCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAATCTTCACAGTCTGGTTTCTTTTCAGCAGTGATGATCTTTCT  746

seq1  CTAGATCTAATAGACTGTATTAATTACATTTGGTGTACAATAACTCAAAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTAATAGACTGTATTAATTACATTTGGTGTACAATAACTCAAAT  796

seq1  ACTTGAGAGAACCAATCTAAAGGATTGAATGTTTAATTTGATGGTTTCAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGAACCAATCTAAAGGATTGAATGTTTAATTTGATGGTTTCAG  846

seq1  AAGGTTCTTCAAATAATGCTTTCATGCATGTGCAGAAAATAAAGGTGGTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTTCAAATAATGCTTTCATGCATGTGCAGAAAATAAAGGTGGTA  896

seq1  GAAATATGTATTCAACTTTATTCGTTGTGGAAATGAAAGACACATGAAAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTATTCAACTTTATTCGTTGTGGAAATGAAAGACACATGAAAG  946

seq1  AGAGAGTGGAGAGGGAGAGAATATGTGTCTATGTATGGAGTATGTGAGCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGGAGAGGGAGAGAATATGTGTCTATGTATGGAGTATGTGAGCT  996

seq1  AAGGACAACATATTCTCTATCTAGTGAAAATCATTTTCTCCAACTAGAAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAACATATTCTCTATCTAGTGAAAATCATTTTCTCCAACTAGAAC  1046

seq1  CTACCTTTTTACATTTCCAAAACAATGCTGTTAGTTGAGGACAATGAATT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTTTACATTTCCAAAACAATGCTGTTAGTTGAGGACAATGAATT  1096

seq1  C  1088
      |
seq2  C  1097


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