BAC Information

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BAC

Clone NameB6Ng01-270K01
Chromosome4 (Build37)
Map Location 4,069,084 - 4,232,846
singlet/doubletdoublet
Overlap geneA830012C17Rik
Upstream geneEG666464, LOC100039044, LOC631371, LOC666513, Tmem68, Tgs1, Lyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1
Downstream geneLOC100039297, LOC622019, Impad1, LOC100039338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270K01.bB6Ng01-270K01.g
ACCGA072919GA072920
length1,018775
definitionB6Ng01-270K01.b B6Ng01-270K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,231,823 - 4,232,846)(4,069,084 - 4,069,853)
sequence
gaattctacagttaggggtcagcacaacatgaataactgtattaaagggt
tgtagcattaggaaggttgagaaccactatcatagcgtatgatggaggta
tgaacatgcacagtaactgagcagagatgaatttgaggcactgagttgga
aaaaccaaatgatgttgttagtactaagaaaagtagaattagaagaacac
tggaaaggaagttgatagcttcaatttagggctacataaattgtgaggaa
acataaaatctaactggaggtgttcaaatgacaatgaaaatctaaggcct
caagttttggggaaggtggtaattcagggaataaggatagagcagatgta
gaaatagccacaattaaccacaaagaatggtgaaagatatttgtgacact
aaatcagttgtttacagcttaaggttaaacaaaacaaaatcctgagtttc
ttgcattccatcattcatgttaacactgtaactgtggtgttcatgaaata
gtgtgataagggcagaaaagaaatctataatgtggttcattttgtccttc
taaatgaatgtaaataagacaagcgtgtgacctacaggggaagaagtgag
ccaatctctctgcagaggtcagctatttgacagagaccttaaaggtctgg
aatctctcagaacagatccaaagctccatgtgcctttaattattaaggaa
gatcacagtgttccaagctgatgctgtttgggagaaagatgttagacagt
taatgaatgtattccaaagaagaaatccatgaggaaagagtcctggccca
gacatcgggttactcctgtaaatcccatgggaagggagctttgcaagggt
ggagaaaccattcatcagagctttctggcattccagtttgctttctggtt
tgtaaccaaaagcaacttggggtgggggagtgtttatttggcctaccctt
ccagatcatggcccatcatggaggtatgacgtcaatcaaaatcttgagag
taatcatggaggaattca
gaattctctgagtgtggccagttagcaagaggcatctgtgtagttgtgga
attcttttggcttagctcaggaagctcttgcagagtggctatagagtagg
gccagcttcagcacggtttattctccttttcacaattccacaaacagata
ggactcttgaaagaaaaggtaacctagggtctggtcatcagaactgattt
taaatgaaagccatgggggtgggggagaggagagaataaaacagagaaaa
ataccaaacataagttataaacttagaattaaatgttctgtcctaaattt
gacctttatctctcagacagggaaaatatacttttcatatcaagtaatac
aatgagacaatgagtaaaacaaatcacattataacctgttagatcaacag
aagaaattgctatgaatataatcagtgtaaggtttgggatgcagcctgac
tttcaaacctgacttttggggatgtagtaaggacccagagaaacagtgat
gttaaagttttgcattacctcattagcagtttgactttggtttgctctta
gtcattttcaaaattaagtttcccaattctaactaggagactctgccaag
gaggcagtttccatggtgggaggctgagtcaggaagggaagtttacaacc
agggatgtgaggagcaggcaatcacctaagtaagtgcaggcgggttcagg
gttcttaaggactttcttgggaaatatccacaactcagaggctgcacata
aatagatacccaataaatctgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_4231823_4232846
seq2: B6Ng01-270K01.b_48_1065 (reverse)

seq1  TGAATTCCTCCATGATTTCTGCTCAAGATTTTTGATTTGACCTCATACCC  50
      ||||||||||||||||| || ||||||| |||||| ||||| ||||| ||
seq2  TGAATTCCTCCATGATTACT-CTCAAGA-TTTTGA-TTGACGTCATA-CC  46

seq1  TCAATGATGGGCCATGATCTGGAAGTGTAAGCCAAATAAACACTCCCCCA  100
      || |||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  TCCATGATGGGCCATGATCTGGAAGGGTAGGCCAAATAAACACTCCCCCA  96

seq1  CCCCAAGTTGCTTTTGGTTACAAAACCAGAAAGCAAACTGGAATGCCAGA  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCCAAGTTGCTTTTGGTTAC-AAACCAGAAAGCAAACTGGAATGCCAGA  145

seq1  AAGCTCCTGATGAATGGTTTCTCCACCCTTGCAAAGCTCCCTTCCCATGG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCT-CTGATGAATGGTTTCTCCACCCTTGCAAAGCTCCCTTCCCATGG  194

seq1  GATTTACAGGAGTAACCCGATGTCTGGGCCAGGACTCTTTCCTCATGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACAGGAGTAACCCGATGTCTGGGCCAGGACTCTTTCCTCATGGAT  244

seq1  TTCTTCTTTGGAATACATTCATTAACTGTCTAACATCTTTCTCCCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGGAATACATTCATTAACTGTCTAACATCTTTCTCCCAAACA  294

seq1  GCATCAGCTTGGAACACTGTGATCTTCCTTAATAATTAAAGGCACATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCTTGGAACACTGTGATCTTCCTTAATAATTAAAGGCACATGGA  344

seq1  GCTTTGGATCTGTTCTGAGAGATTCCAGACCTTTAAGGTCTCTGTCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGATCTGTTCTGAGAGATTCCAGACCTTTAAGGTCTCTGTCAAAT  394

seq1  AGCTGACCTCTGCAGAGAGATTGGCTCACTTCTTCCCCTGTAGGTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACCTCTGCAGAGAGATTGGCTCACTTCTTCCCCTGTAGGTCACAC  444

seq1  GCTTGTCTTATTTACATTCATTTAGAAGGACAAAATGAACCACATTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTATTTACATTCATTTAGAAGGACAAAATGAACCACATTATAG  494

seq1  ATTTCTTTTCTGCCCTTATCACACTATTTCATGAACACCACAGTTACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTCTGCCCTTATCACACTATTTCATGAACACCACAGTTACAGT  544

seq1  GTTAACATGAATGATGGAATGCAAGAAACTCAGGATTTTGTTTTGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATGAATGATGGAATGCAAGAAACTCAGGATTTTGTTTTGTTTAA  594

seq1  CCTTAAGCTGTAAACAACTGATTTAGTGTCACAAATATCTTTCACCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGCTGTAAACAACTGATTTAGTGTCACAAATATCTTTCACCATTC  644

seq1  TTTGTGGTTAATTGTGGCTATTTCTACATCTGCTCTATCCTTATTCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTAATTGTGGCTATTTCTACATCTGCTCTATCCTTATTCCCTG  694

seq1  AATTACCACCTTCCCCAAAACTTGAGGCCTTAGATTTTCATTGTCATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCACCTTCCCCAAAACTTGAGGCCTTAGATTTTCATTGTCATTTG  744

seq1  AACACCTCCAGTTAGATTTTATGTTTCCTCACAATTTATGTAGCCCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCCAGTTAGATTTTATGTTTCCTCACAATTTATGTAGCCCTAAA  794

seq1  TTGAAGCTATCAACTTCCTTTCCAGTGTTCTTCTAATTCTACTTTTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTATCAACTTCCTTTCCAGTGTTCTTCTAATTCTACTTTTCTTA  844

seq1  GTACTAACAACATCATTTGGTTTTTCCAACTCAGTGCCTCAAATTCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAACAACATCATTTGGTTTTTCCAACTCAGTGCCTCAAATTCATCT  894

seq1  CTGCTCAGTTACTGTGCATGTTCATACCTCCATCATACGCTATGATAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGTTACTGTGCATGTTCATACCTCCATCATACGCTATGATAGTG  944

seq1  GTTCTCAACCTTCCTAATGCTACAACCCTTTAATACAGTTATTCATGTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAACCTTCCTAATGCTACAACCCTTTAATACAGTTATTCATGTTG  994

seq1  TGCTGACCCCTAACTGTAGAATTC  1024
      ||||||||||||||||||||||||
seq2  TGCTGACCCCTAACTGTAGAATTC  1018

seq1: chr4_4069084_4069853
seq2: B6Ng01-270K01.g_66_840

seq1  GAATTCTCTGAGTGTGGCCAGTTAGCAAGAGGCATCTGTGTAGTTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTGTGGCCAGTTAGCAAGAGGCATCTGTGTAGTTGTGGA  50

seq1  ATTCTTTTGGCTTAGCTCAGGAAGCTCTTGCAGAGTGGCTATAGAGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGGCTTAGCTCAGGAAGCTCTTGCAGAGTGGCTATAGAGTAGG  100

seq1  GCCAGCTTCAGCACGGTTTATTCTCCTTTTCACAATTCCACAAACAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTCAGCACGGTTTATTCTCCTTTTCACAATTCCACAAACAGATA  150

seq1  GGACTCTTGAAAGAAAAGGTAACCTAGGGTCTGGTCATCAGAACTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTGAAAGAAAAGGTAACCTAGGGTCTGGTCATCAGAACTGATTT  200

seq1  TAAATGAAAGCCATGGGGGTGGGGGAGAGGAGAGAATAAAACAGAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAGCCATGGGGGTGGGGGAGAGGAGAGAATAAAACAGAGAAAA  250

seq1  ATACCAAACATAAGTTATAAACTTAGAATTAAATGTTCTGTCCTAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAACATAAGTTATAAACTTAGAATTAAATGTTCTGTCCTAAATTT  300

seq1  GACCTTTATCTCTCAGACAGGGAAAATATACTTTTCATATCAAGTAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTATCTCTCAGACAGGGAAAATATACTTTTCATATCAAGTAATAC  350

seq1  AATGAGACAATGAGTAAAACAAATCACATTATAACCTGTTAGATCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACAATGAGTAAAACAAATCACATTATAACCTGTTAGATCAACAG  400

seq1  AAGAAATTGCTATGAATATAATCAGTGTAAGGTTTGGGATGCAGCCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTGCTATGAATATAATCAGTGTAAGGTTTGGGATGCAGCCTGAC  450

seq1  TTTCAAACCTGACTTTTGGGGATGTAGTAAGGACCCAGAGAAACAGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACCTGACTTTTGGGGATGTAGTAAGGACCCAGAGAAACAGTGAT  500

seq1  GTTAAAGTTTTGCATTACCTCATTAGCAGTTTGACTTTGGTTTGCTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTTTGCATTACCTCATTAGCAGTTTGACTTTGGTTTGCTCTTA  550

seq1  GTCATTTTCAAAATTAAG-TTCCCAATTCTAACTAGGAGACTCTGCCAAG  599
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCATTTTCAAAATTAAGTTTCCCAATTCTAACTAGGAGACTCTGCCAAG  600

seq1  GAGGCAGTTTCCATGGT-GGAGGCTGAGTCAGGAA-GGAAG-TTACAACC  646
      ||||||||||||||||| ||||||||||||||||| ||||| ||||||||
seq2  GAGGCAGTTTCCATGGTGGGAGGCTGAGTCAGGAAGGGAAGTTTACAACC  650

seq1  A-GGATGTGAGGAGCAGGCAATCACCTAGGTAAGTGCAGGCGGGTTCA-G  694
      | |||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  AGGGATGTGAGGAGCAGGCAATCACCTAAGTAAGTGCAGGCGGGTTCAGG  700

seq1  GTTCTTAAGGGACTTTCTTTGGAAAATATCCACAACACAGAGGCTGCACA  744
      |||||||| |||||||| |||| ||||||||||||| |||||||||||||
seq2  GTTCTTAA-GGACTTTC-TTGGGAAATATCCACAACTCAGAGGCTGCACA  748

seq1  T-AATAGATACCCAATAAATCTGCTTT  770
      | |||||||||||||||||||||||||
seq2  TAAATAGATACCCAATAAATCTGCTTT  775