BAC Information

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BAC

Clone NameB6Ng01-271K03
Chromosome4 (Build37)
Map Location 28,171,874 - 28,172,952
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842
Downstream geneLOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271K03.bB6Ng01-271K03.g
ACCGA073662GA073663
length1,1631,096
definitionB6Ng01-271K03.b B6Ng01-271K03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccactatacctatctggtcctgggcttttttttttttttttgg
ttaggagactattaatgactgcttctttttctttaggggactctttagat
ggtttatctgatcctattttaactttggtaactggtatccatttctttca
gatttttcagttttgttgattataagcatttgtagtagaatttgatgatt
ttttttttaatttccatggtttccattgttatatcacccttttcatttca
gattttaataatttggataatgtctctgtgccctctggttagtctggcta
agggtttatctatcttgttgattttcacaaagaaccaggtcttggttttg
ttaattctttgtatagtctttttgttactatttgtttgatttcagctctg
agtttgattctttcctaaagtctactcctcttgggtgtgtttgcttcttt
ttgttctggagctttcatgtgtgctgtcaagctttcagtgtaaactctct
ccaggttcttgttggaggcaattaactatgagttttcctcttaccagtgc
cttcattgtgtcctgtaagtttttgtatggtgtgtctttatttttattaa
attcgaaaaagtctttaatttctcttattattatttattccttgaccaag
ttatcacttagtagagagatgttcagcttccatgtgcatgtgtgttttct
atggtttttgttggtattgaagaccagccttagtccatggtgatctgatg
ggatgcattggattatttcaatcttgtatctgttgtggcctgttttgtga
ccaattatatcatcagttttggagaagataccataagttgctgagaaggt
aatattctttgttttaggatgaaacattctataaatatctgttagatcca
tttgggtttataacttctgttgctttcactgtgcctttgctagtttctgt
ttctatatctgtcatgtgagagtggggtgttgagactctactattattgt
ctgagtgcatgtcttctttgaccttagtaaggttctttatggatgtgata
cctggatttgagcagattttcagtattagaacacttgatagtttcttcgg
accatagaagtcttactaattgactctatgacgtattatccatgcatggc
tactcagctgctg
gaattctggccttgagacaatgtgaatgtaactgtgaaactgaacaaaca
aagtacctgtactagtggaacagtgcctagcaatgatcttgtcatatttc
agcatctttattgtatccttagtgataggatacagattcagtaggatatc
cactaactgtataaaactgaaatgaccatagagacctctccatttcttca
ttgccttgcataggtatgaggtacaatgtttggtccctgggaaaatggtt
gttgttttcattgtggttaatgagtatctaaacaattatgtaatataggt
ttatcaggacataggaatacatttactgcacttttgaaggcatatacgat
atatatatatatatatatatatatatatatatatatataaaatgtaattt
gttcatagaaatgtagtgttggcctatgatcttgaaatgtcagtagtcac
aacaaggaaagcatgttgaaagataaagaactcacaatcttaatcagtaa
tatctggttaaattattaacatttaaaaagttttattctatttataattg
tgtgtgtgtgtgtgtgtgttatatgtatacatgaacatgggtacctgtag
aggccagaagacttgagtttcaagaagcttaagtaattagcaatctctct
agcctccccccccaaaaaaaaacaaaaacaaaaactaagaaccagacatt
cattcacagacaaaaacatacttttgtactttttgtttttatttactcat
aatcctggagaacaatcgcacattcatggtctgcctgaggtacatgtaga
gtaaaaactcagcttgggcagcttagagaaactgtctcaactcaaactgc
tcaatatgagacactcatctagcattcataatagtctggggtttaggtac
tcatcctctgagcaaaaggacatcacttattcattcaatacgtaaaagaa
tggccaatacttgggcaaagtttgtttcatgatacccccccccctcccgc
acccacgcaccttgctcactatttagttgcaggtcttcagcgcagatcga
aagttcttaggaggggatgggagacagcttacaccatttttagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28171874_28172952
seq2: B6Ng01-271K03.g_68_1163 (reverse)

seq1  TGACTAAAA---GTGTAAACTG--CACCATTCC--TCTAAGGACTTTCTG  43
      |||||||||   |||||| |||    |||| ||   ||||| |||||| |
seq2  TGACTAAAAATGGTGTAAGCTGTCTCCCATCCCCTCCTAAGAACTTTC-G  49

seq1  ATCT--GCTTGAGA-CTGCAACTAAATAGTGA-CAA-GTGCGTGGGTTGC  88
      ||||  |||  ||| ||||||||||||||||| ||| ||||||||| |||
seq2  ATCTGCGCTGAAGACCTGCAACTAAATAGTGAGCAAGGTGCGTGGG-TGC  98

seq1  GGGA-GGGGGGGGGTATCATGAAACAAACTTTG-CCAAGTATT-GCCATT  135
      |||| |||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GGGAGGGGGGGGGGTATCATGAAACAAACTTTGCCCAAGTATTGGCCATT  148

seq1  C-TTTACGTATTGAATGAATAAGTGATGTCCTTTTGCTCAGAGGATGAGT  184
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACGTATTGAATGAATAAGTGATGTCCTTTTGCTCAGAGGATGAGT  198

seq1  AACTAAA-CCCAGACTATTATGAATGCTAGATGAGTGTCTCATATTGAGC  233
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAACCCCAGACTATTATGAATGCTAGATGAGTGTCTCATATTGAGC  248

seq1  AGTTTGAGTTGAGACAGTTTCTCTAAGCTGCCCAAGCTGAGTTTTTACTC  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGTTGAGACAGTTTCTCTAAGCTGCCCAAGCTGAGTTTTTACTC  298

seq1  TACATGTACCTCAGGCAGACCATGAATGTGCGATTGTTCTCCAGGATTAT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTACCTCAGGCAGACCATGAATGTGCGATTGTTCTCCAGGATTAT  348

seq1  GAGTAAATAAAAAC-AAAAGTACAAAAGTATGTTTTTGTCTGTGAATGAA  382
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGTAAATAAAAACAAAAAGTACAAAAGTATGTTTTTGTCTGTGAATGAA  398

seq1  TGTCTGGTTCTTAG-TTTTGTTTTTGTTTTTTTTTGGGGGGGGAGGCTAG  431
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTTCTTAGTTTTTGTTTTTGTTTTTTTTTGGGGGGGGAGGCTAG  448

seq1  AGAGATTGCTAATTACTTAAGCTTCTTGAAACTCAAGTCTTCTGGCCTCT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGCTAATTACTTAAGCTTCTTGAAACTCAAGTCTTCTGGCCTCT  498

seq1  ACAGGTACCCATGTTCATGTATACATATAACACACACACACACACACACA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACCCATGTTCATGTATACATATAACACACACACACACACACACA  548

seq1  ATTATAAATAGAATAAAACTTTTTAAATGTTAATAATTTAACCAGATATT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAATAGAATAAAACTTTTTAAATGTTAATAATTTAACCAGATATT  598

seq1  ACTGATTAAGATTGTGAGTTCTTTATCTTTCAACATGCTTTCCTTGTTGT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTAAGATTGTGAGTTCTTTATCTTTCAACATGCTTTCCTTGTTGT  648

seq1  GACTACTGACATTTCAAGATCATAGGCCAACACTACATTTCTATGAACAA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTGACATTTCAAGATCATAGGCCAACACTACATTTCTATGAACAA  698

seq1  ATTACATTTTATATATATATATATATATATATATATATATATATATATAT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTTATATATATATATATATATATATATATATATATATATATAT  748

seq1  CGTATATGCCTTCAAAAGTGCAGTAAATGTATTCCTATGTCCTGATAAAC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATATGCCTTCAAAAGTGCAGTAAATGTATTCCTATGTCCTGATAAAC  798

seq1  CTATATTACATAATTGTTTAGATACTCATTAACCACAATGAAAACAACAA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTACATAATTGTTTAGATACTCATTAACCACAATGAAAACAACAA  848

seq1  CCATTTTCCCAGGGACCAAACATTGTACCTCATACCTATGCAAGGCAATG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCCAGGGACCAAACATTGTACCTCATACCTATGCAAGGCAATG  898

seq1  AAGAAATGGAGAGGTCTCTATGGTCATTTCAGTTTTATACAGTTAGTGGA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGAGAGGTCTCTATGGTCATTTCAGTTTTATACAGTTAGTGGA  948

seq1  TATCCTACTGAATCTGTATCCTATCACTAAGGATACAATAAAGATGCTGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTACTGAATCTGTATCCTATCACTAAGGATACAATAAAGATGCTGA  998

seq1  AATATGACAAGATCATTGCTAGGCACTGTTCCACTAGTACAGGTACTTTG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACAAGATCATTGCTAGGCACTGTTCCACTAGTACAGGTACTTTG  1048

seq1  TTTGTTCAGTTTCACAGTTACATTCACATTGTCTCAAGGCCAGAATTC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAGTTTCACAGTTACATTCACATTGTCTCAAGGCCAGAATTC  1096