BAC Information

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BAC

Clone NameB6Ng01-271M01
Chromosome4 (Build37)1 (Build37)
Map Location 147,204,682 - 147,205,704119,944,413 - 119,944,927
singlet/doubletsingletsinglet
Overlap geneMGC67181
Upstream geneLOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692
Downstream geneD4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271M01.bB6Ng01-271M01.g
ACCGA073751GA073752
length1,023958
definitionB6Ng01-271M01.b B6Ng01-271M01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,204,682 - 147,205,704)(119,944,413 - 119,944,927)
sequence
gaattctcccattatcagggcagatggggatgatctgtacacaaggtgtg
ggcagggggagaggaagctgctcactaggggcaaccctgctgtttggtct
caggtccgagagtgtagggaaggtctggaggcatcctacctggtcccact
gaacttcttaataatgatcccagggatcttttatttacttctttctttct
ttaggtttttgttgttaaactgtttaggaattttcatttattgagtaaaa
agtatatattctgggcaagtcactcaaaatattcttggagttcacttgac
ttaaggtaccagcacccaacccacattgggagacccttaaccacttgcta
cctaagatcttttaatcccagcacttgggaggcagaggctggtgaatttc
tgagttcgaggccagcctggtctacagagtgagttccaggacagccaggg
ctacacagagaaaccctgtctaaaacaaacaaacaaacaaaaaaacaaaa
actgaatgagcatggcactatggagaggggggtgtcttcagagacccagt
attttccccagaccatctccatctgatgtcaaccagaacagaacattggc
catttcgtttaaaaaaggaaaagaaagagagagcactatgcttgtgtaca
tacaccagttactttatgtacaacaaagaaatgggggcagggaaatgaaa
gaagagggaaaactgtagcagtcagcatgtggcgggaccaacctgcagct
ttctaagtgagaatgtattcctggtctatcacaaaattctggagtaaagt
agcaggcgtcccctttttagtagacacctccagccaggcgtggtggcgct
gggcctttaatcccagcacttcggaggcgaggcagaggcaggaggatttc
tgagttcaagtccagcctgtctacagagtgagatccaggacagccagggc
tgtctgagacaaattatatattataggtatgctgtgagcagaagctattt
cagtacccaagatgcttttctga
gaattctctgatgaattctcagactgcttttttcagtaaagcatttgcca
cattcactacatttgtaaggtttctctcttgtatgaattctctgatgaat
tatcagattgccttttgtagtaaagcatttgtcacattcactgcatttgt
aaggtttctctcctgcatgaattctctgatgaatactaagataggattgt
tgggtaaagcatttgtcacattcactgcatttgtaaggtttctctcctgt
atgaattctctgatgaatactaagatgggattgttgggtaaagcatttgt
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
atactaagattggattgtttggtaaagcatttgtcacattcactgcattt
gtaaggtttctctcctgtatgaattctctgatgaatactaagataggatt
gttgggtaaagcatttgtcacattcactgcatttgtaaggtttctctcct
gtatgaattctctgatgaattctcagactgcttttttcagtaaagcattt
gccacattcactgcatttgtaaggtttctctcctgtatgaattctctgat
gaattctcagactgcttttttcagtaaagcatttgccacattcactgcat
ttgtaaggtttctctcctgtatgaattctctgatgaattctcagactggt
tttatcagtaaagcatttgccacattcactgcatttgtaaggtttctctc
ctttatgaattctctgatgcatagtaagattgaatttgtttttaaaacat
ttgtcacattcactacatttgtaattttctcttctgtatgaattccctga
tgaatactaagatggatctgatgggtaaagcatttgtcacttttactact
tttcgtaaggtttctttccatgataaattctctgctgactttgtagtttt
tctctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147204682_147205704
seq2: B6Ng01-271M01.b_44_1066 (reverse)

seq1  TTAGAAAAGCATCTT-GGTACTG-AATAGCTCTTGCTCACAGCATACCTA  48
      | ||||||||||||| ||||||| |||||||  |||||||||||||||||
seq2  TCAGAAAAGCATCTTGGGTACTGAAATAGCTTCTGCTCACAGCATACCTA  50

seq1  TATATATATTTTTTTTTTCAAGACAGCCCTGGCTGTCCTGGATCTCACTC  98
      || ||||||  ||| | || ||||||||||||||||||||||||||||||
seq2  TA-ATATATAATTTGTCTC-AGACAGCCCTGGCTGTCCTGGATCTCACTC  98

seq1  TGTAGACCAGGCTGGACTTGAACTCAGAAATCCTCCTGCCTCTGCCTCGC  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGA-CAGGCTGGACTTGAACTCAGAAATCCTCCTGCCTCTGCCTCGC  147

seq1  CTCCGAAGTGCTGGGATTAAAGG-CCAGCGCCACCACGCCTGGCTGGAGG  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCCGAAGTGCTGGGATTAAAGGCCCAGCGCCACCACGCCTGGCTGGAGG  197

seq1  TGTCTACTAAAAAGGGGACGCCTGCTACTTTACTCCAGAATTTTGTGATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTAAAAAGGGGACGCCTGCTACTTTACTCCAGAATTTTGTGATA  247

seq1  GACCAGGAATACATTCTCACTTAGAAAGCTGCAGGTTGGTCCCGCCACAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAATACATTCTCACTTAGAAAGCTGCAGGTTGGTCCCGCCACAT  297

seq1  GCTGACTGCTACAGTTTTCCCTCTTCTTTCATTTCCCTGCCCCCATTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGCTACAGTTTTCCCTCTTCTTTCATTTCCCTGCCCCCATTTCT  347

seq1  TTGTTGTACATAAAGTAACTGGTGTATGTACACAAGCATAGTGCTCTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTACATAAAGTAACTGGTGTATGTACACAAGCATAGTGCTCTCTC  397

seq1  TTTCTTTTCCTTTTTTAAACGAAATGGCCAATGTTCTGTTCTGGTTGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCCTTTTTTAAACGAAATGGCCAATGTTCTGTTCTGGTTGACA  447

seq1  TCAGATGGAGATGGTCTGGGGAAAATACTGGGTCTCTGAAGACACCCCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGAGATGGTCTGGGGAAAATACTGGGTCTCTGAAGACACCCCCC  497

seq1  TCTCCATAGTGCCATGCTCATTCAGTTTTTGTTTTTTTGTTTGTTTGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATAGTGCCATGCTCATTCAGTTTTTGTTTTTTTGTTTGTTTGTTT  547

seq1  GTTTTAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  597

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCAGCCTCTGCCTCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCAGCCTCTGCCTCCC  647

seq1  AAGTGCTGGGATTAAAAGATCTTAGGTAGCAAGTGGTTAAGGGTCTCCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAAAGATCTTAGGTAGCAAGTGGTTAAGGGTCTCCCA  697

seq1  ATGTGGGTTGGGTGCTGGTACCTTAAGTCAAGTGAACTCCAAGAATATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTTGGGTGCTGGTACCTTAAGTCAAGTGAACTCCAAGAATATTT  747

seq1  TGAGTGACTTGCCCAGAATATATACTTTTTACTCAATAAATGAAAATTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACTTGCCCAGAATATATACTTTTTACTCAATAAATGAAAATTCC  797

seq1  TAAACAGTTTAACAACAAAAACCTAAAGAAAGAAAGAAGTAAATAAAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTTTAACAACAAAAACCTAAAGAAAGAAAGAAGTAAATAAAAGA  847

seq1  TCCCTGGGATCATTATTAAGAAGTTCAGTGGGACCAGGTAGGATGCCTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGATCATTATTAAGAAGTTCAGTGGGACCAGGTAGGATGCCTCC  897

seq1  AGACCTTCCCTACACTCTCGGACCTGAGACCAAACAGCAGGGTTGCCCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCCCTACACTCTCGGACCTGAGACCAAACAGCAGGGTTGCCCCT  947

seq1  AGTGAGCAGCTTCCTCTCCCCCTGCCCACACCTTGTGTACAGATCATCCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAGCTTCCTCTCCCCCTGCCCACACCTTGTGTACAGATCATCCC  997

seq1  CATCTGCCCTGATAATGGGAGAATTC  1023
      ||||||||||||||||||||||||||
seq2  CATCTGCCCTGATAATGGGAGAATTC  1023

seq1: chr1_119944413_119944927
seq2: B6Ng01-271M01.g_208_640 (reverse)

seq1  AACCTTACAAATGTAATAAGTGTTGTAAATCATTTACAGATTCCTCATCA  50
      ||||||||||||| | | | ||| | ||||  ||||| ||      | ||
seq2  AACCTTACAAATGCAGTGAATGTGGCAAATGCTTTACTGA--AAAAAGCA  48

seq1  --CTTCAAGTTCACCAGAGAATCCATACTGGAGATGTATCTTAAAAATGT  98
        ||   | |||| |||||||| ||||| |||||   | |||| ||||| 
seq2  GTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGC  98

seq1  ATTAAATGTGGCAAAT-CTATAC---ACAGTCCTCAGATCTTAAATTTCA  144
      | | |||||| ||||| || |||   ||| ||||   ||||||   ||||
seq2  AGTGAATGTGACAAATGCTTTACCCAACAATCCT---ATCTTAGTATTCA  145

seq1  CCACCAAATCCATACTGGATAAAAAACTTTACTAATATAATCAATATGAC  194
       ||   ||| ||||| |||  | |||| |||| |||  | | ||| ||||
seq2  TCAGAGAATTCATACAGGA-GAGAAACCTTACAAATGCAGTGAATGTGAC  194

seq1  ATATCATTTACC---CAGTCCTTAAATCTTCAAGTTCACTACAGAATACA  241
      | ||  ||||||   || |||   ||||||    ||||  | ||||| ||
seq2  AAATGCTTTACCAAACAATCC---AATCTTAGTATTCATCAGAGAATTCA  241

seq1  TATAGGAGGTAATCTTCACAAATAAAG---AGTTGGCAAGTCTCTTTTCT  288
      || |||||  || | | ||||||  ||   |  || ||| |  |||| | 
seq2  TACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAAT-GCTTTAC-  289

seq1  TGTCCTCTATTC--TCCAAGTA--CATCAAAAAATCCATATGGGAAAGCA  334
         |  | || |  ||  ||||  ||||| | ||| ||||  ||| || |
seq2  --CCAACAATCCCATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAA  337

seq1  GCCTTATAAATGCAGTGAATGTGGGAAATAATTTTCCTGGTCCCCCTACA  384
       ||||| ||||||||||||||||  ||||  |||         ||| |||
seq2  ACCTTACAAATGCAGTGAATGTGACAAATGCTTT--------ACCCAACA  379

seq1  ACCCTCATCAACG---TCATTACAGAATTCGTTTTGGAGACAAACATTCC  431
      | ||| |||   |   |||| | ||||||| |   ||||| |||| || |
seq2  ATCCT-ATCTTAGTATTCATCAGAGAATTCATGCAGGAGAGAAACCTTAC  428

seq1  TAATGTAAAGCATGTAGAAATTTATTCACAGTTATATCTTCAAACACAGC  481
       ||||                                             
seq2  AAATG---------------------------------------------  433

seq1  ACAGCATGCACATTGGAGAGAAACCTTACAAATG  515
                                        
seq2  ----------------------------------  433