BAC Information

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BAC

Clone NameB6Ng01-271P09
Chromosome4 (Build37)
Map Location 61,510,736 - 61,511,502
singlet/doubletsinglet
Overlap geneLOC435785
Upstream geneMup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5
Downstream geneLOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271P09.bB6Ng01-271P09.g
ACCGA073907GA073908
length1,1881,118
definitionB6Ng01-271P09.b B6Ng01-271P09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatactagcaatttaaaagtacacctgaaagctccagggaaaa
aggagaagaaagcatacccaaggggaatagttggttggagattatcaaac
agacaggaattaataaattagaaacaaagaaaataatacaaagaatcaag
gaaagcaagagctgatcctttgaaaaatgcaacaaaataaacaaatcctt
agcctaactacctaagaggcaaagacacagtatccacataaacaaaacca
gaaatgagaagggagacataacaataacattttggaaaatcaaagaatca
ttcgaccaaacctacaaagcctgtactccataatattgaaaaacctaaat
taaatgaatgactttctagatagatacctcttatcaaagttaaatcaata
tcaggtaaagtatttaaataactatataagtgataggaaatagaagcagt
cattaaaagtctcccatcccaaacaagacaagaccccaaggctcaccctc
ttctactgctctccataccccaatcctgcccagagagagctggtctccca
ggagtgctgacacacctgtgaacacaggtaagaccaccagttttgctcaa
attcctggtccaagtaggacccacccagaaccatcaggacagaggaacca
aggaatggtggaggacaggatccttctggcttctgtctgcacccctatct
gaccatgtgccacagttctccatacccaaattcctccccaagagaactgg
tctcccagtagtatggatacacagacttgcagttgggaaaggcaacagtc
aatgacagctttgtgcttcactaagctcaactcttttatgtggattctgg
ggatcaaactcaggaccccacactgcacagcaagctcttgatcagatgag
ttgtcgtcccagcccttatccctttttgatatagtagtcagtctagctga
ataatttaatgttgaactgggatctttttcttcttccctaaaactatgcc
tcccaggagagagaggcaagggaaaatcctggggatttgcttgccagtag
gtctagcacatcataagcctctggtgaagagaaagacttctgtctcagaa
aactagatgaagaatggagcgaggtaggacctggattcaattatcctggc
ctctacatatacccacccagaggtgccaagaaacctgc
gaattcatttctttattttttccttgactcaaggatcattgagtagagaa
ctgttcaatttcaatgagtttgtgggctttctattgtttctgttgttgaa
gtctagatttaatgcatgatagtctgataggatactagaagttatttcaa
tgttcttgtatctgttgagataagaagaccaactactttgttaccaacta
tgtggtcagttttggaaaagattccatgagatgctaagaataagatgtat
ttttctgtattttggtgagatgttctctagatatgtgttaggtctatttg
attcataacttttgttagtttcaatatttatctgtttactttctatctca
atgacctgtccattggtgagagtagggtgatgaagacctctacccatttg
attgtattttcctgtatttctttaaggaatttattcatttcttctttaaa
gctctatcatctttacaaaattgaatttaatgtcattttcttgtgcttta
gttgtgttaggatatccagggttgctgtagtaggatagctatgctctgaa
gatggcatatttcagtggctcctgttggttatgttcttatgctggccttt
agtcatctggttgtcccaccaggggtttataggtataacaggtatcagga
aattgggcctaacctgaatattcctggtgcagcagcctctggtgggcagc
cttgtgttggacaatggaactcataggccaggctcagagcagctggttgt
gccccaggttacatagagggcaggaggttgggggcagagggtagagtcta
atctgtatattccaggtacagcaggtctggtggaggccactggagcagtg
gctgcacaatggagcagggggtggggggatgggcagcacatagcttcagg
caaatgagtatgcaccagggattccaccttgtaatttctttaagaaggtg
ttaaaattcacatttttccttctgtcatgtaatatcaaaagaattaaaag
aatatcagtggtgtcatattctaaatttttgaaataatcaacgaatgtgc
ttcgttgatggacacgttacagatattatgaatggtatgttggtgcagta
ttgaagggtatctctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61510736_61511502
seq2: B6Ng01-271P09.b_462_1233

seq1  AATAACTATATAAGTGATAGGAAATAGAAGCAGTCATTAAAAGTCTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTATATAAGTGATAGGAAATAGAAGCAGTCATTAAAAGTCTCCCA  50

seq1  TCCCAAACAAGACAAGACCCCAAGGCTCACCCTCTTCTACTGCTCTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACAAGACAAGACCCCAAGGCTCACCCTCTTCTACTGCTCTCCAT  100

seq1  ACCCCAATCCTGCCCAGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAATCCTGCCCAGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACC  150

seq1  TGTGAACACAGGTAAGACCACCAGTTTTGCTCAAATTCCTGGTCCAAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACACAGGTAAGACCACCAGTTTTGCTCAAATTCCTGGTCCAAGTA  200

seq1  GGACCCACCCAGAACCATCAGGACAGAGGAACCAAGGAATGGTGGAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACCCAGAACCATCAGGACAGAGGAACCAAGGAATGGTGGAGGAC  250

seq1  AGGATCCTTCTGGCTTCTGTCTGCACCCCTATCTGACCATGTGCCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTTCTGGCTTCTGTCTGCACCCCTATCTGACCATGTGCCACAGT  300

seq1  TCTCCATACCCAAATTCCTCCCCAAGAGAACTGGTCTCCCAGTAGTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATACCCAAATTCCTCCCCAAGAGAACTGGTCTCCCAGTAGTATGG  350

seq1  ATACACAGACTTGCAGTTGGGAAAGGCAACAGTCAATGACAGCTTTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGACTTGCAGTTGGGAAAGGCAACAGTCAATGACAGCTTTGTGC  400

seq1  TTCACTAAGCTCAACTCTTTTATGTGGATTCTGGGGATCAAACTCAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAAGCTCAACTCTTTTATGTGGATTCTGGGGATCAAACTCAGGAC  450

seq1  CCCACACTGCACAGCAAGCTCTTGATCAGATGAGTTGTCGTCCCAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTGCACAGCAAGCTCTTGATCAGATGAGTTGTCGTCCCAGCCCT  500

seq1  TATCCCTTTTTGATATAGTAGTCAGTCTAGCTGAATAATTTAATGTTGAA  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATCCCTTTTTGATATAGTAGTCAGTCTAGCTGAATAATTTAATGTTG-A  549

seq1  ACTGGGATC-TTTTCTTCTTCCCTAAAACTATG-CTCCCAAGAGAGAGAG  598
      ||||||||| ||||||||||||||||||||||| |||||| |||||||||
seq2  ACTGGGATCTTTTTCTTCTTCCCTAAAACTATGCCTCCCAGGAGAGAGAG  599

seq1  GCA--GGGAAATCCTGGGG-TTTGCTTGCCAGTAGGTCTAGCAACATTCA  645
      |||  || ||||||||||| |||||||||||||||||||||| ||| |||
seq2  GCAAGGGAAAATCCTGGGGATTTGCTTGCCAGTAGGTCTAGC-ACA-TCA  647

seq1  TAAGCTCTTGGTGAAGAGAAAGAC-TCTGTCTCAGAAAACTAGATGAAGA  694
      |||||   |||||||||||||||| |||||||||||||||||||||||||
seq2  TAAGCCTCTGGTGAAGAGAAAGACTTCTGTCTCAGAAAACTAGATGAAGA  697

seq1  AT-GAGCGAGGAAGACACTTGATATCAA-TAT-CTGGCTTCTACATATAC  741
      || |||||||| ||   || ||| |||| ||| ||||| |||||||||||
seq2  ATGGAGCGAGGTAGGACCTGGAT-TCAATTATCCTGGCCTCTACATATAC  746

seq1  ACACACAGAGGTGCACAAG-AACCTGC  767
       ||| ||||||||| |||| |||||||
seq2  CCACCCAGAGGTGC-CAAGAAACCTGC  772