BAC Information

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BAC

Clone NameB6Ng01-272A15
Chromosome4 (Build37)
Map Location 83,416,651 - 83,588,329
singlet/doubletdoublet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272A15.bB6Ng01-272A15.g
ACCGA073963GA073964
length1,113571
definitionB6Ng01-272A15.b B6Ng01-272A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,587,219 - 83,588,329)(83,416,651 - 83,417,225)
sequence
gaattcaaacacttgggctcacactgggattgttttcccagggtcaaccc
agccttagaactttgttgaggaatttactttgctcattacttcagggaaa
taaaagactcagttgagacaattataactctattctggaggtgagcaacc
gctccaacctgacctgtgtttcattcccatccctccttcgggctttacct
gcaggatcccccgggaaagcacagctgggaaatgggatcttggcgggtct
attacaaggtctttccgtgttctgtgtctcaagtttctgaacctgaaact
cgtgaaatacaacttgcaaagcgcctctttaggcaagaataccactggaa
tctttcctcctccactacaaactagaggagtaggcgccatccccggggga
accaagcaccagcggtccgcgctttgaagtacatctggacaagagaaggg
cacctcggccaagctgcgagagaccaggatgtgccaggctttcactgcca
ggggacaggcacaggggctgaaagatggagggaggcaggaggcaggcaag
tgctctcacgcggacagtgaggggagagtggaaggatgtggtcatgggga
gagaggaaagaaagatgaatggggtctgaatcagtcataggctaaagcaa
acaggaaggttttaaagtgagatttgaggaaaggaagtggttcagaacaa
gggagggagcaggctggagacatccatctcagaaaaacagccactctcct
ttttaggatgggcagactcgtgtgaatatttcttggcgacactgacagat
gggcggaccaaaaataattttttttaatttttttttttttaaatcacaac
agactccagccttttcttagaacttgaaccagaaagaattgagactttag
gtttgaaaacattcagaggctcactggggtgaaagtctgctgggcttcct
ctagcacagaagcaggccacccaggacgaagctcacggggaggccatgta
actctgctcgacaccaaagagaagtttccatgcatcctccctaacgctat
gtccagtggaataaagatgcacggtcaaggcaagctcaaatgcattcagg
tgtgaaattaccc
actttaattctcaatttttgacatggcatctgattttgttgttgacacaa
catattctatttagaaacataacgtattctaaaacatgactgaattagtt
ctaatagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtt
acttgggtaaattgacatcctttatggtacatgttcctttgaatattcag
tggttcattttgctagcattgtctgagggttctacatatatatacaatat
acacaatgtatattgatcttacggcagttgtcaggctgggatcagaccag
taatgaatgagttaagaagtgtttctccatttcagtctctgaagaatttg
actggtggtctctgggtgttcaccagcaaagctccctgactctagacttc
tggtttttggaattttttttgctcattatttttcttcaaaggtctaatca
aaatttatgtttctttatgaattaatttagatcatttttgaattaaaatt
ttattttatttaactggtcttgtttgttaacacgcaattatttattctct
tagaattttttcttatttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_83587219_83588329
seq2: B6Ng01-272A15.b_34_1146 (reverse)

seq1  GGGTAATTTCACACTTGAAACGCA-TTGAGCTTTCCCTGGGCCGTGCA-C  48
      |||||||||||||| || || ||| |||||| || ||| | ||||||| |
seq2  GGGTAATTTCACACCTG-AATGCATTTGAGC-TTGCCTTGACCGTGCATC  48

seq1  TCTATTCCACTGGACATAGCGTTAGGGA-GATGGCCATGGAAAC-TCTC-  95
      | |||||||||||||||||||||||||| ||||  ||||||||| |||| 
seq2  TTTATTCCACTGGACATAGCGTTAGGGAGGATG--CATGGAAACTTCTCT  96

seq1  TTGGTGTCGAGCAGAGTT-CATGGCCTCCCCGTGAGC-TCGTCCTGGGTG  143
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TTGGTGTCGAGCAGAGTTACATGGCCTCCCCGTGAGCTTCGTCCTGGGTG  146

seq1  GCCCTGCTTCTGTGCTAGGAGAAGCCCAGCAGACTTTCACCCCAGTGAGC  193
      | ||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  G-CCTGCTTCTGTGCTAGAGGAAGCCCAGCAGACTTTCACCCCAGTGAGC  195

seq1  CTCTGAATGTTTTCAAACCTAAAGTCTCAATTCTTTCTGGTTCAAGTTCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATGTTTTCAAACCTAAAGTCTCAATTCTTTCTGGTTCAAGTTCT  245

seq1  AGGAAAAGGCTGGAGTCTGTTGTGATTTAAAAAAAAAAAAATTAAAAAAA  293
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGCTGGAGTCTGTTGTGATTTAAAAAAAAAAAAATTAAAAAAA  295

seq1  ATTATTTTTGGTCCGCCCATCTGTCAGTGTCGCCAAGAAATATTCACACG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTGGTCCGCCCATCTGTCAGTGTCGCCAAGAAATATTCACACG  345

seq1  AGTCTGCCCATCCTAAAAAGGAGAGTGGCTGTTTTTCTGAGATGGATGTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCCATCCTAAAAAGGAGAGTGGCTGTTTTTCTGAGATGGATGTC  395

seq1  TCCAGCCTGCTCCCTCCCTTGTTCTGAACCACTTCCTTTCCTCAAATCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTGCTCCCTCCCTTGTTCTGAACCACTTCCTTTCCTCAAATCTC  445

seq1  ACTTTAAAACCTTCCTGTTTGCTTTAGCCTATGACTGATTCAGACCCCAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAACCTTCCTGTTTGCTTTAGCCTATGACTGATTCAGACCCCAT  495

seq1  TCATCTTTCTTTCCTCTCTCCCCATGACCACATCCTTCCACTCTCCCCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCTTTCCTCTCTCCCCATGACCACATCCTTCCACTCTCCCCTC  545

seq1  ACTGTCCGCGTGAGAGCACTTGCCTGCCTCCTGCCTCCCTCCATCTTTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCGCGTGAGAGCACTTGCCTGCCTCCTGCCTCCCTCCATCTTTCA  595

seq1  GCCCCTGTGCCTGTCCCCTGGCAGTGAAAGCCTGGCACATCCTGGTCTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGCCTGTCCCCTGGCAGTGAAAGCCTGGCACATCCTGGTCTCT  645

seq1  CGCAGCTTGGCCGAGGTGCCCTTCTCTTGTCCAGATGTACTTCAAAGCGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTTGGCCGAGGTGCCCTTCTCTTGTCCAGATGTACTTCAAAGCGC  695

seq1  GGACCGCTGGTGCTTGGTTCCCCCGGGGATGGCGCCTACTCCTCTAGTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGCTGGTGCTTGGTTCCCCCGGGGATGGCGCCTACTCCTCTAGTTT  745

seq1  GTAGTGGAGGAGGAAAGATTCCAGTGGTATTCTTGCCTAAAGAGGCGCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGAGGAGGAAAGATTCCAGTGGTATTCTTGCCTAAAGAGGCGCTT  795

seq1  TGCAAGTTGTATTTCACGAGTTTCAGGTTCAGAAACTTGAGACACAGAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTGTATTTCACGAGTTTCAGGTTCAGAAACTTGAGACACAGAAC  845

seq1  ACGGAAAGACCTTGTAATAGACCCGCCAAGATCCCATTTCCCAGCTGTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAAGACCTTGTAATAGACCCGCCAAGATCCCATTTCCCAGCTGTGC  895

seq1  TTTCCCGGGGGATCCTGCAGGTAAAGCCCGAAGGAGGGATGGGAATGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGGGGGATCCTGCAGGTAAAGCCCGAAGGAGGGATGGGAATGAAA  945

seq1  CACAGGTCAGGTTGGAGCGGTTGCTCACCTCCAGAATAGAGTTATAATTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCAGGTTGGAGCGGTTGCTCACCTCCAGAATAGAGTTATAATTG  995

seq1  TCTCAACTGAGTCTTTTATTTCCCTGAAGTAATGAGCAAAGTAAATTCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTGAGTCTTTTATTTCCCTGAAGTAATGAGCAAAGTAAATTCCT  1045

seq1  CAACAAAGTTCTAAGGCTGGGTTGACCCTGGGAAAACAATCCCAGTGTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGTTCTAAGGCTGGGTTGACCCTGGGAAAACAATCCCAGTGTGA  1095

seq1  GCCCAAGTGTTTGAATTC  1111
      ||||||||||||||||||
seq2  GCCCAAGTGTTTGAATTC  1113

seq1: chr4_83416651_83417225
seq2: B6Ng01-272A15.g_63_638

seq1  GAATTCACTTTAATTCTCAATTTTTGACATGGCATCTGATTTTGTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTAATTCTCAATTTTTGACATGGCATCTGATTTTGTTGTTG  50

seq1  ACACAACATATTCTATTTAGAAACATAACGTATTCTAAAACATGACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACATATTCTATTTAGAAACATAACGTATTCTAAAACATGACTGAA  100

seq1  TTAGTTCTAATAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTAATAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG  150

seq1  TGTGTTACTTGGGTAAATTGACATCCTTTATGGTACATGTTCCTTTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACTTGGGTAAATTGACATCCTTTATGGTACATGTTCCTTTGAAT  200

seq1  ATTCAGTGGTTCATTTTGCTAGCATTGTCTGAGGGTTCTACATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGTTCATTTTGCTAGCATTGTCTGAGGGTTCTACATATATATA  250

seq1  CAATATACACAATGTATATTGATCTTACGGCAGTTGTCAGGCTGGGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACACAATGTATATTGATCTTACGGCAGTTGTCAGGCTGGGATCA  300

seq1  GACCAGTAATGAATGAGTTAAGAAGTGTTTCTCCATTTCAGTCTCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTAATGAATGAGTTAAGAAGTGTTTCTCCATTTCAGTCTCTGAAG  350

seq1  AATTTGACTGGTGGTCTCTGGGTGTTCACCAGCAAAGCTCCCTGACTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACTGGTGGTCTCTGGGTGTTCACCAGCAAAGCTCCCTGACTCTA  400

seq1  GACTTCTGGTTTTTGGAAGTTTTTTTGCTCATTAATTTTCTTCAAAGGTC  450
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  GACTTCTGGTTTTTGGAATTTTTTTTGCTCATTATTTTTCTTCAAAGGTC  450

seq1  TAATCAAAATTTATGTTTCTTTATGAATTAATTTAGATCATTTTTGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAATTTATGTTTCTTTATGAATTAATTTAGATCATTTTTGAATT  500

seq1  AAAATTTTATTTTATTTAACTGGTCTTGTTTGTTAACACGCAATTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTATTTTATTTAACTGGTCTTGTTTGTTAACACGCAATTATTTA  550

seq1  TTCTCTTAGAA-TTTTTCTTATTTCT  575
      ||||||||||| ||||||||||||||
seq2  TTCTCTTAGAATTTTTTCTTATTTCT  576