BAC Information

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BAC

Clone NameB6Ng01-272L10
Chromosome4 (Build37)
Map Location 154,912,837 - 155,050,412
singlet/doubletdoublet
Overlap geneGnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2
Upstream genePrdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52
Downstream geneB930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272L10.bB6Ng01-272L10.g
ACCGA074470GA074471
length1,116609
definitionB6Ng01-272L10.b B6Ng01-272L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,912,837 - 154,913,944)(155,049,804 - 155,050,412)
sequence
gaattcaatctctagaactgaaaaagaaataaaagttgtagctgaaaaga
aactggatgtctgtgcctagttctgtgataaattttgtgactaaggatgg
aaaaggattttatttcttgtcacatatatatgttgttctttataaaggaa
atttacatatcagaacatagcttggcagggtatgatgtagtacagcttta
atgcaagcactttggaggcagagacaagtagacctctgtgagtttgaggt
catcccggtctacataataagttccaggacagtcaaagctacataataga
ggaaccctgtctcaaaaaggcaagtgagtcagtcatacaagcatggtctg
attaaaagtgtcagagggctcaaaatggcgtggttgagttttacctcaag
tctttgatgagcttcagaagttcaaatatgcccaaatatacttgtggctg
aaatacctagaatgtatatattttgattacaatttgaagttaaaacctgt
atgtcactatcacatggtagacctgggagagcctctcacccttccttaag
agcacattgtgtctgagtaatggtgcttcccagaattgctctcactcagt
tccttcccagataactgagattcctttgcttgttggtcatgcttgcctta
tgcagtatatcctgcctcagtctacaatgcagagaactgcaggttccaaa
ctaggacagagtcatgagcaattcataattcactataattggtggcctct
tttgcccaaccatgtgcaattctgatgtcatttatcatctcactaccaca
cagttttatagagacaggtattctaatttatctctgtctgggaagtttga
gagttcgttttttcttttaattttgagggatagagtctgggccttaaact
tgttacatagtgaccttgaactaacactcacacacactctctctccccct
ctccctctccctcccctttcccctctctctgtctgatttatgtttctcca
catccccaccatttatgagttacaacgtatgctaccattggagcctcatg
gtttgttgttctagtttgatttctactggtgtgaataaacactgaagcaa
gaagcaaccttgaaga
gaattcagtctttttattcacagagacacttcttgaattcttcactggca
atacaggctttctgggttgtcacacaccctctggtggcagacagctgtct
gttctgtttagttgtggcaactcaagttttgccaatggtagcgcagtcat
gagatacagactggctgagtgcataactcactcacttgttattccaaaaa
cactggggccctgccagaaagaaaaatgggaaagaaaacagagttttttc
taatgcaaggccactcccatcctatcctttactctacttgttgcctctca
catcttcctaacagcgcccagcctcaacctgtatctttcagtcatggtat
tatgcatttggagtttctcctccccttgttagctcagtcattgatttgtt
tgtttgcttgaggcagggtttctctttgtatccctggctgtcctggaact
ggatctatagaccagactggtctcaaacttgcagagatcttcctgcctct
ccctcccaattgctgggattatcacctggccatctgtcattaatttaact
agatgtttttagcattttattcagatttttaaaaaaagatttgttgctgg
gcattggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154912837_154913944
seq2: B6Ng01-272L10.b_45_1160

seq1  GAATTCAATCTCTAGAACTGAAAAAGAAATAAAAGTTGTAGCTGAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCTAGAACTGAAAAAGAAATAAAAGTTGTAGCTGAAAAGA  50

seq1  AACTGGATGTCTGTGCCTAGTTCTGTGATAAATTTTGTGACTAAGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATGTCTGTGCCTAGTTCTGTGATAAATTTTGTGACTAAGGATGG  100

seq1  AAAAGGATTTTATTTCTTGTCACATATATATGTTGTTCTTTATAAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATTTTATTTCTTGTCACATATATATGTTGTTCTTTATAAAGGAA  150

seq1  ATTTACATATCAGAACATAGCTTGGCAGGGTATGATGTAGTACAGCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATATCAGAACATAGCTTGGCAGGGTATGATGTAGTACAGCTTTA  200

seq1  ATGCAAGCACTTTGGAGGCAGAGACAAGTAGACCTCTGTGAGTTTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCACTTTGGAGGCAGAGACAAGTAGACCTCTGTGAGTTTGAGGT  250

seq1  CATCCCGGTCTACATAATAAGTTCCAGGACAGTCAAAGCTACATAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCGGTCTACATAATAAGTTCCAGGACAGTCAAAGCTACATAATAGA  300

seq1  GGAACCCTGTCTCAAAAAGGCAAGTGAGTCAGTCATACAAGCATGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTGTCTCAAAAAGGCAAGTGAGTCAGTCATACAAGCATGGTCTG  350

seq1  ATTAAAAGTGTCAGAGGGCTCAAAATGGCGTGGTTGAGTTTTACCTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGTGTCAGAGGGCTCAAAATGGCGTGGTTGAGTTTTACCTCAAG  400

seq1  TCTTTGATGAGCTTCAGAAGTTCAAATATGCCCAAATATACTTGTGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATGAGCTTCAGAAGTTCAAATATGCCCAAATATACTTGTGGCTG  450

seq1  AAATACCTAGAATGTATATATTTTGATTACAATTTGAAGTTAAAACCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTAGAATGTATATATTTTGATTACAATTTGAAGTTAAAACCTGT  500

seq1  ATGTCACTATCACATGGTAGACCTGGGAGAGCCTCTCACCCTTCCTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTATCACATGGTAGACCTGGGAGAGCCTCTCACCCTTCCTTAAG  550

seq1  AGCACATTGTGTCTGAGTAATGGTGCTTCCCAGAATTGCTCTCACTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTGTGTCTGAGTAATGGTGCTTCCCAGAATTGCTCTCACTCAGT  600

seq1  TCCTTCCCAGATAACTGAGATTCCTTTGCTTGTTGGTCATGCTTGCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCAGATAACTGAGATTCCTTTGCTTGTTGGTCATGCTTGCCTTA  650

seq1  TGCAGTATATCCTGCCTCAGTCTACAATGCAGAGAACTGCAGGTTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATATCCTGCCTCAGTCTACAATGCAGAGAACTGCAGGTTCCAAA  700

seq1  CTAGGACAGAGTCATGAGCAATTCATAATTCACTATAATTGGTGGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAGAGTCATGAGCAATTCATAATTCACTATAATTGGTGGCCTCT  750

seq1  TTTGCCCAACCATGTGCAATTCTGATGTCATTTATCATCTCACTACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCAACCATGTGCAATTCTGATGTCATTTATCATCTCACTACCACA  800

seq1  CAGTTTTATAGAGACAGGTATTCTAATTTATCTCTGTCTGGGAAGTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTATAGAGACAGGTATTCTAATTTATCTCTGTCTGGGAAGTTTGA  850

seq1  GAGTTCGTTTTTTCTTTTAATTTTGAGGGATAGAGTCTGGGCCTTAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGTTTTTTCTTTTAATTTTGAGGGATAGAGTCTGGGCCTTAAACT  900

seq1  TGTTACATAGTGACCTTGAACTAACACTCACACACACTCTCTCTCCCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATAGTGACCTTGAACTAACACTCACACACACTCTCTCTCCCCCT  950

seq1  CTCCCTCTCCCTCCCC-TTCCCCTCTCTCTGTCTGATTTATGGTTTCTCC  999
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  CTCCCTCTCCCTCCCCTTTCCCCTCTCTCTGTCTGATTTAT-GTTTCTCC  999

seq1  ACATCCC--ACATTTATGAGTTACAACGTATGCTACCATTGGAG-CTCAT  1046
      |||||||   |||||||||||||||||||||||||||||||||| |||||
seq2  ACATCCCCACCATTTATGAGTTACAACGTATGCTACCATTGGAGCCTCAT  1049

seq1  GGTT--GTGTTCTAGTTTGATTTCTACTGGTGTGATTAAACACTG-AGCA  1093
      ||||   |||||||||||||||||||||||||||| ||||||||| ||||
seq2  GGTTTGTTGTTCTAGTTTGATTTCTACTGGTGTGAATAAACACTGAAGCA  1099

seq1  AG-AGCAA-CTTGAAGA  1108
      || ||||| ||||||||
seq2  AGAAGCAACCTTGAAGA  1116

seq1: chr4_155049804_155050412
seq2: B6Ng01-272L10.g_66_674 (reverse)

seq1  CACCAATGCCCAGCAACAAATCTTTTTTTAAAAATCTGAATAAAATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATGCCCAGCAACAAATCTTTTTTTAAAAATCTGAATAAAATGCTA  50

seq1  AAAACATCTAGTTAAATTAATGACAGATGGCCAGGTGATAATCCCAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTAGTTAAATTAATGACAGATGGCCAGGTGATAATCCCAGCAA  100

seq1  TTGGGAGGGAGAGGCAGGAAGATCTCTGCAAGTTTGAGACCAGTCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGAGAGGCAGGAAGATCTCTGCAAGTTTGAGACCAGTCTGGTC  150

seq1  TATAGATCCAGTTCCAGGACAGCCAGGGATACAAAGAGAAACCCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCCAGTTCCAGGACAGCCAGGGATACAAAGAGAAACCCTGCCTC  200

seq1  AAGCAAACAAACAAATCAATGACTGAGCTAACAAGGGGAGGAGAAACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAACAAATCAATGACTGAGCTAACAAGGGGAGGAGAAACTCC  250

seq1  AAATGCATAATACCATGACTGAAAGATACAGGTTGAGGCTGGGCGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATAATACCATGACTGAAAGATACAGGTTGAGGCTGGGCGCTGTT  300

seq1  AGGAAGATGTGAGAGGCAACAAGTAGAGTAAAGGATAGGATGGGAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGTGAGAGGCAACAAGTAGAGTAAAGGATAGGATGGGAGTGGC  350

seq1  CTTGCATTAGAAAAAACTCTGTTTTCTTTCCCATTTTTCTTTCTGGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTAGAAAAAACTCTGTTTTCTTTCCCATTTTTCTTTCTGGCAGG  400

seq1  GCCCCAGTGTTTTTGGAATAACAAGTGAGTGAGTTATGCACTCAGCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTGTTTTTGGAATAACAAGTGAGTGAGTTATGCACTCAGCCAGT  450

seq1  CTGTATCTCATGACTGCGCTACCATTGGCAAAACTTGAGTTGCCACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTCATGACTGCGCTACCATTGGCAAAACTTGAGTTGCCACAACT  500

seq1  AAACAGAACAGACAGCTGTCTGCCACCAGAGGGTGTGTGACAACCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAGACAGCTGTCTGCCACCAGAGGGTGTGTGACAACCCAGAA  550

seq1  AGCCTGTATTGCCAGTGAAGAATTCAAGAAGTGTCTCTGTGAATAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATTGCCAGTGAAGAATTCAAGAAGTGTCTCTGTGAATAAAAAG  600

seq1  ACTGAATTC  609
      |||||||||
seq2  ACTGAATTC  609