BAC Information

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BAC

Clone NameB6Ng01-273C14
Chromosome4 (Build37)
Map Location 118,365,684 - 118,487,707
singlet/doubletdoublet
Overlap geneOlfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335
Upstream geneLOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342
Downstream geneOlfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273C14.bB6Ng01-273C14.g
ACCGA074803GA074804
length9531,018
definitionB6Ng01-273C14.b B6Ng01-273C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,365,684 - 118,366,641)(118,486,688 - 118,487,707)
sequence
gaattccagagttgggggctcattaactgttgcagaataatgattaccac
acaggagcctgccttgtggatgaggggtatgggccacctgtgagctacgg
taccatctaacaggctggtctctgctaaagacctgctaaggcttcctaag
gctcagttaaaatcataaaataagaactttataccatcagagagcagaga
cgggagcaactacaccctgaaaatagcatgtgtttaagaaatggaagaaa
ctctcctctcccttcccctcttcctcctttctccctttccctccccctcc
ttttcatcctcccctcctttacctctacctccccaccctctttccccttt
ttctcttccctcttcccttcctcctgctcttccgcctcctgctcccatcc
ctctgaggtcacccatccagcaaatggaccagatgaggctggagcctcga
atcctacctccctgaagcccgatgccatctgttccagcacacttgtctgt
ctctcaccagtttctttcacctaacacttagtcacaatgggttaacttct
acctatatgcactaagattgaatttgtgaaaatcctgcttagactctttc
agtgtgtttataaggaatatgagcatataactctccttatctataatata
gtttcttgattttttttattacactggtgctgtgcagacataatgttttg
tgcactgtgtagagtttacccttatatttattatttaaatgctgatttct
ctgctctcatctattctttcaacccagacacggcagtgcaaaggctaagg
acaagaatctcctgttgcaagtttgtgggaacaattattactgtttattc
tctgctttgtcagtgaatgctgatcagcccatggctgggcagaagaaaga
ataggacagaagcttccaccagtgcagggagggaggaggtggtgtgtggt
gtg
gaattctacagaagaggaaactaagacttcagaataacatcaagttaaag
agagcatgctccacagtttgtacagagtttgatttttttgtttttggtcc
ccaattattatttgaatccaagagacatgagctctttggagagtttcctc
tgtacactgtcatgagaatgtcatgttgacttccatgttgatgtttcatg
attgacactttttcttctttgtctctgcttatgtgtatgagcatgttgtc
tccaactccatacacatgcctgatccctggggaagtcagaagaagctacc
agatcctctataactcataacatagctggttgtgagtttccatttgcgtg
atggaaaccacactaggacctctgtctgagaaagaaattgtctttttctg
aaagctactctccagtcaccattgttgtgacctcttcataggcatcagag
tggctgggtaacttgctacatatacagcagggaggaaggagtttgtttta
cctaaggttgttgaggaaggtagaggagtgtgaatcaaacatagtctcat
cagagtttgggctccaagtttggacagcaaaaggaagcacaattagaact
tgtgttcttgacctgtgtatcaagggatcatgtaccatctcctgtgctct
gagatctgtgtattcgctagttagcctagaaaagtgaacaggtcaccacc
cctcacccatgggcttttttcttctgttctgcctcccaagggtcccaccc
ttagcgctctcattggcagcatcctgagaatcatcttagaatccctgttg
ggaacagaaatgagccttttctgtgctctcctggggaacccaagcgagaa
tgttggatcataaaacttcagctgctggtcctactgtgatgaagtgaaga
tgtctgagcttgcctttgttcatcaggattttatagactcaatcttcaga
acactggttgccttggtctgtgtaaggatttgacaaacgcagttcctcaa
actcataacaactggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118365684_118366641
seq2: B6Ng01-273C14.b_43_995

seq1  GAATTCCAGACTTCTGGCCTCATTAACTGTTGCAGAATAATGATTACCAC  50
      |||||||||| ||  || ||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTTGGGGGCTCATTAACTGTTGCAGAATAATGATTACCAC  50

seq1  ACAGGAGCCTGCCTTGTGGATGAGGGGTATGGGCCACCTGTGAGCTACAG  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGGAGCCTGCCTTGTGGATGAGGGGTATGGGCCACCTGTGAGCTACGG  100

seq1  TACCATCTAACAGGCTGGTCTCTGCTAAAGACCTGCTAAGGCTTCCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTAACAGGCTGGTCTCTGCTAAAGACCTGCTAAGGCTTCCTAAG  150

seq1  GCTCAGTTAAAATCATAAAATAAGAACTTTATACCATCAGAGAGCAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTAAAATCATAAAATAAGAACTTTATACCATCAGAGAGCAGAGA  200

seq1  CGGGAGCAACTACACCCTGAAAATAGCATGTGTTTAAGAAATGGAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGCAACTACACCCTGAAAATAGCATGTGTTTAAGAAATGGAAGAAA  250

seq1  CTCTCCTCTCCCTTCCCCTCTTCCTCCTTTCTCCCTTTCCCTCCCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTCCCTTCCCCTCTTCCTCCTTTCTCCCTTTCCCTCCCCCTCC  300

seq1  TTTTCATCCTCCCCTCCTTTACCTCTACCTCCCCACCCTCTTTCCCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCCTCCCCTCCTTTACCTCTACCTCCCCACCCTCTTTCCCCTTT  350

seq1  TTCTCTTCCCTCTTCCCTTCCTCCTGCTCTTCCGCCTCCTGCTCCCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCCTCTTCCCTTCCTCCTGCTCTTCCGCCTCCTGCTCCCATCC  400

seq1  CTCTGAGGTCACCCATCCAGCAAATGGACCAGATGAGGCTGGAGCCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTCACCCATCCAGCAAATGGACCAGATGAGGCTGGAGCCTCGA  450

seq1  ATCCTACCTCCCTGAAGCCCGATGCCATCTGTTCCAGCACACTTGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACCTCCCTGAAGCCCGATGCCATCTGTTCCAGCACACTTGTCTGT  500

seq1  CTCTCACCAGTTTCTTTCACCTAACACTTAGTCACAATGGGTTAACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCAGTTTCTTTCACCTAACACTTAGTCACAATGGGTTAACTTCT  550

seq1  ACCTATATGCACTAAGATTGAATTTGTGAAAATCCTGCTTAGACTCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATGCACTAAGATTGAATTTGTGAAAATCCTGCTTAGACTCTTTC  600

seq1  AGTGTGTTTATAAGGAATATGAGCATATAACTCTCCTTATCTATAATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTATAAGGAATATGAGCATATAACTCTCCTTATCTATAATATA  650

seq1  GTTTCTTGATTTTTTTTATTACACTGGTGCTGTGCAGACATAATGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGATTTTTTTTATTACACTGGTGCTGTGCAGACATAATGTTTTG  700

seq1  TGCACTGTGTAGAGTTTACCCTTATATTTATTATTTAAATGCTGATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTGTAGAGTTTACCCTTATATTTATTATTTAAATGCTGATTTCT  750

seq1  CTGCTCTCATCTATTCTTTCAACCCAGACACGGCAGTGC-AAGGCTAAGG  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGCTCTCATCTATTCTTTCAACCCAGACACGGCAGTGCAAAGGCTAAGG  800

seq1  ACAAGAATCTCCTGTTGCAAGTTTGTGGGAACAATTATTACTGTTTATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATCTCCTGTTGCAAGTTTGTGGGAACAATTATTACTGTTTATTC  850

seq1  TCTGCTTTGTCAGTGAATGCTGATCAGCCAATGGCTGGGCAGAAGAAAGA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGCTTTGTCAGTGAATGCTGATCAGCCCATGGCTGGGCAGAAGAAAGA  900

seq1  ATAGGACAGAAGCTTCCACCAGTGCAGGGA-GGAGGAGGTGTGTGTGTGT  948
      |||||||||||||||||||||||||||||| ||||||||||       ||
seq2  ATAGGACAGAAGCTTCCACCAGTGCAGGGAGGGAGGAGGTG-------GT  943

seq1  GTGTGGTGTG  958
      ||||||||||
seq2  GTGTGGTGTG  953

seq1: chr4_118486688_118487707
seq2: B6Ng01-273C14.g_65_1082 (reverse)

seq1  ATGCCAAGTTGTTATGGAGTTTGAGGGACTGGGTTTCTCAAATCCTTTAC  50
      ||||| ||||||||| |||||||||| |||| |||| |||||||| ||||
seq2  ATGCC-AGTTGTTAT-GAGTTTGAGGAACTGCGTTTGTCAAATCC-TTAC  47

seq1  AAAGACC-AGGCAACCCAGGGTTCTGAAGATTGTGTCTATAAAATCCTGA  99
      | ||||| |||||| |||| ||||||||||||| ||||||||||||||||
seq2  ACAGACCAAGGCAA-CCAGTGTTCTGAAGATTGAGTCTATAAAATCCTGA  96

seq1  TGAACAAAGGCAAGCTCAGACATCTTCACTTCATCACAGTAGGACCAGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAGGCAAGCTCAGACATCTTCACTTCATCACAGTAGGACCAGCA  146

seq1  GCTGAAGTTTTATGATCCAACATTCTCGCTTGGTTTCCCCAGGAGAGCAC  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTGAAGTTTTATGATCCAACATTCTCGCTTGGGTTCCCCAGGAGAGCAC  196

seq1  AG-AAAGGCTCATTTCTGTTCCCAACAGGGATTCTAAGATGATTCTCAGG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCTCATTTCTGTTCCCAACAGGGATTCTAAGATGATTCTCAGG  246

seq1  ATGCTGCCAATGAGAGCGCTAAGGGTGGGACCCTTGGGAGGCAGAACAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCAATGAGAGCGCTAAGGGTGGGACCCTTGGGAGGCAGAACAGA  296

seq1  AGAAAAAAGCCCATGGGTGAGGGGTGGTGACCTGTTCACTTTTCTAGGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGCCCATGGGTGAGGGGTGGTGACCTGTTCACTTTTCTAGGCT  346

seq1  AACTAGGGAATACACAGAACTCAGAGCACAGGAGATGGTACATGATCCCT  398
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  AACTAGCGAATACACAGATCTCAGAGCACAGGAGATGGTACATGATCCCT  396

seq1  TGATACACAGGTCAAGAACACAAGTTCTAATTGTGCTTCCTTTTGCTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACAGGTCAAGAACACAAGTTCTAATTGTGCTTCCTTTTGCTGTC  446

seq1  CAAACTTGGAGCCCAAACTCTGATGAGACTATGTTTGATTCACACTCCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGGAGCCCAAACTCTGATGAGACTATGTTTGATTCACACTCCTC  496

seq1  TACCTTCCTCAACAACCTTAGGTAAAACAAACTCCTTCCTCCCTGCTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCCTCAACAACCTTAGGTAAAACAAACTCCTTCCTCCCTGCTGTA  546

seq1  TATGTAGCAAGTTACCCAGCCACTCTGATGCCTATGAAGAGGTCACAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCAAGTTACCCAGCCACTCTGATGCCTATGAAGAGGTCACAACA  596

seq1  ATGGTGACTGGAGAGTAGCTTTCAGAAAAAGACAATTTCTTTCTCAGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACTGGAGAGTAGCTTTCAGAAAAAGACAATTTCTTTCTCAGACA  646

seq1  GAGGTCCTAGTGTGGTTTCCATCACGCAAATGGAAACTCACAACCAGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTAGTGTGGTTTCCATCACGCAAATGGAAACTCACAACCAGCTA  696

seq1  TGTTATGAGTTATAGAGGATCTGGTAGCTTCTTCTGACTTCCCCAGGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGAGTTATAGAGGATCTGGTAGCTTCTTCTGACTTCCCCAGGGAT  746

seq1  CAGGCATGTGTATGGAGTTGGAGACAACATGCTCATACACATAAGCAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGTGTATGGAGTTGGAGACAACATGCTCATACACATAAGCAGAG  796

seq1  ACAAAGAAGAAAAAGTGTCAATCATGAAACATCAACATGGAAGTCAACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAGAAAAAGTGTCAATCATGAAACATCAACATGGAAGTCAACAT  846

seq1  GACATTCTCATGACAGTGTACAGAGGAAACTCTCCAAAGAGCTCATGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTCATGACAGTGTACAGAGGAAACTCTCCAAAGAGCTCATGTCT  896

seq1  CTTGGATTCAAATAATAATTGGGGACCAAAAACAAAAAAATCAAACTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTCAAATAATAATTGGGGACCAAAAACAAAAAAATCAAACTCTG  946

seq1  TACAAACTGTGGAGCATGCTCTCTTTAACTTGATGTTATTCTGAAGTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTGTGGAGCATGCTCTCTTTAACTTGATGTTATTCTGAAGTCTT  996

seq1  AGTTTCCTCTTCTGTAGAATTC  1020
      ||||||||||||||||||||||
seq2  AGTTTCCTCTTCTGTAGAATTC  1018