BAC Information

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BAC

Clone NameB6Ng01-273D14
Chromosome4 (Build37)
Map Location 87,488,687 - 87,489,773
singlet/doubletsinglet
Overlap geneMllt3
Upstream geneRps6, Asah3l, Slc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273D14.bB6Ng01-273D14.g
ACCGA074851GA074852
length1,2181,076
definitionB6Ng01-273D14.b B6Ng01-273D14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatataaaagcaatctacagcaaaccag
tagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaaa
tcagggactagacaaggctgcccactttctccttacctattcaacattgt
acttgaagtcctagccagagcaatttgacaacaaaaggagatcagggtga
tacaaattggaaaagaagaagtcaaaatatcactttttgcagatgatatg
atagtatatataagtgaccctaaaaattccaccagagaactcctaaacct
gataaacagcttcaatgcagtagctgaatataaaattaactcaaacaagt
caatggcctttctgtacacaaagaataaacaggctgagaaagaacttagg
gaaacaacacccttcgcaatagtcacaaataatataaaataccttggtgt
gactttaactaaggaagtgaaagatctatatgataagaactttaagtctc
ggatgaaagaaattaaagatctcagaagatggaaagatctcccatgctca
tggattggcaggatcaatatataaaaatcttgccaaaagcaatctacaga
ttgaatgcaatccccatcaaaattccaactcaattcttcagcgaattaga
aagagcaatctgcaaattcatctggaataacaaaaaacctaggatagcaa
aaactcttctcaatgataaaagaacctctggtgcaatcaccatgcctaac
ctaaatctgtactacagagcaattgtgataaaaacggcatggtactggtt
tagctacagacaagtagaccaatggaatagaattgaagactcagaaatga
acccacacagctatggtcacttgatctttgacaagggagctaaaaccatc
cagtggaaaaaagacagcattttcaacaaatggtgctggcacaactggct
gttatcatatagaagaatgcaaattgatccattcctatctccttgtacta
aggtcaaatctaagtggatcatggaatttccacatataccagagacagtg
aaacttatagaggagaaagttggaaaagcctcaaagaatatggcacaggt
aaaaattcctggaaatagaaacaggcatgctgtgcctgtagatcagaatt
gaccatgggaaccctcataagtgcagttgaggtggccagggtaaagagag
tcgtacgaggttactagt
gaattcctgttctacagaaagattttattaataaataatttaagttcccc
tgtagaggtccccctccacctcctgatgtttattggtttttacgatgtaa
catgagaagtataactgatagtttaagaacttatatctttaaaatatgta
caatactccatatagatctaatgtttactaccagtgcttgggtgttctgc
aatattgttagtgagctgattgcaaattgccagcattctcagtgagtcac
caaaccaattaaaaaaatcttaagggtattagatttgaaaatgttcttcc
ttaatttagtttgtccattatatgttattttaattattcatagtattgct
taacatgccaggaaatgtcctgtaatagaatttattaaataacaaagttt
cagtaatatgaattctatatttagtagcatgttttaaagtctcagattaa
aatgctttgtcaagagttatttagctagtttgaagtaaaaaaaaaacagg
tctttgcttggtagatttatccattttgtaattttgaaaccaagtgctca
tttcagaaaaaggataatttgaactatttttcaatacatagaggacagtt
gattttgtaggaaacaaaaatccatgtccccactggcatagagcttcaat
gtgcacctagggagttgttttctgatgtgtatcagtgaacgagataccca
cttctctcctcctatagatgcaataaatagaagactgctcattttgttga
gagtccctacatctgttctctttattttgtcatcccagatatataagggc
tatcagatgggtttcccagcattgggcttaagtgagtgagaagtgaagga
ccatgagcctgaaggtggaaattctgattgggatttgtctttgggtctat
taggaggttgaagcgagcatgaaagaaatattctcttaatattgatgtgg
atttttcctggccaagtgcctgtgtttcttatttttgctattatagtaag
attcacatttaaattttgctctaaataggatgtgagagtttatgcatagt
ggtgtttgttgtgtatataatttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87488687_87489773
seq2: B6Ng01-273D14.g_65_1140 (reverse)

seq1  CTTAAAATATATACAC-ACAAACACCCAACTATGCATAAAACCTCTTCAC  49
      |||||| ||||||||| |||||||||  ||||||||||||  ||| ||||
seq2  CTTAAATTATATACACAACAAACACC--ACTATGCATAAA--CTC-TCAC  45

seq1  AATCTATTTAAGAGCAAAATTTAAATTGTGAATCTTTACTATTAATAGCA  99
      |  |||||| ||||||||||||||| |||||||| |||||| ||||||||
seq2  ATCCTATTT-AGAGCAAAATTTAAA-TGTGAATC-TTACTA-TAATAGCA  91

seq1  AAAATAAGAAACAACAGGCAACCTTGGCCAGGAAAAATCCACATCAATAT  149
      |||||||||||| |||||||  ||||||||||||||||||||||||||||
seq2  AAAATAAGAAAC-ACAGGCA--CTTGGCCAGGAAAAATCCACATCAATAT  138

seq1  TAAGAGAATATTTCTTTCATGCTCGCTTCAACCTCCTAATAGACCCAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAATATTTCTTTCATGCTCGCTTCAACCTCCTAATAGACCCAAAG  188

seq1  ACAAATCCCAATCAGAATTTCCACCTTCAGGCTCATGGTCCTTCACTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCCAATCAGAATTTCCACCTTCAGGCTCATGGTCCTTCACTTCT  238

seq1  CACTCACTTAAGCCCAATGCTGGGAAACCCATCTGATAGCCCTTATATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTTAAGCCCAATGCTGGGAAACCCATCTGATAGCCCTTATATAT  288

seq1  CTGGGATGACAAAATAAAGAGAACAGATGTAGGGACTCTCAACAAAATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGACAAAATAAAGAGAACAGATGTAGGGACTCTCAACAAAATGA  338

seq1  GCAGTCTTCTATTTATTGCATCTATAGGAGGAGAGAAGTGGGTATCTCGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTTCTATTTATTGCATCTATAGGAGGAGAGAAGTGGGTATCTCGT  388

seq1  TCACTGATACACATCAGAAAACAACTCCCTAGGTGCACATTGAAGCTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATACACATCAGAAAACAACTCCCTAGGTGCACATTGAAGCTCTA  438

seq1  TGCCAGTGGGGACATGGATTTTTGTTTCCTACAAAATCAACTGTCCTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGGGGACATGGATTTTTGTTTCCTACAAAATCAACTGTCCTCTA  488

seq1  TGTATTGAAAAATAGTTCAAATTATCCTTTTTCTGAAATGAGCACTTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAAAAATAGTTCAAATTATCCTTTTTCTGAAATGAGCACTTGGT  538

seq1  TTCAAAATTACAAAATGGATAAATCTACCAAGCAAAGACCTGTTTTTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATTACAAAATGGATAAATCTACCAAGCAAAGACCTGTTTTTTTT  588

seq1  TTACTTCAAACTAGCTAAATAACTCTTGACAAAGCATTTTAATCTGAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAAACTAGCTAAATAACTCTTGACAAAGCATTTTAATCTGAGAC  638

seq1  TTTAAAACATGCTACTAAATATAGAATTCATATTACTGAAACTTTGTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATGCTACTAAATATAGAATTCATATTACTGAAACTTTGTTAT  688

seq1  TTAATAAATTCTATTACAGGACATTTCCTGGCATGTTAAGCAATACTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATTCTATTACAGGACATTTCCTGGCATGTTAAGCAATACTATG  738

seq1  AATAATTAAAATAACATATAATGGACAAACTAAATTAAGGAAGAACATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAAATAACATATAATGGACAAACTAAATTAAGGAAGAACATTT  788

seq1  TCAAATCTAATACCCTTAAGATTTTTTTAATTGGTTTGGTGACTCACTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTAATACCCTTAAGATTTTTTTAATTGGTTTGGTGACTCACTGA  838

seq1  GAATGCTGGCAATTTGCAATCAGCTCACTAACAATATTGCAGAACACCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGGCAATTTGCAATCAGCTCACTAACAATATTGCAGAACACCCA  888

seq1  AGCACTGGTAGTAAACATTAGATCTATATGGAGTATTGTACATATTTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTAGTAAACATTAGATCTATATGGAGTATTGTACATATTTTAA  938

seq1  AGATATAAGTTCTTAAACTATCAGTTATACTTCTCATGTTACATCGTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAGTTCTTAAACTATCAGTTATACTTCTCATGTTACATCGTAAA  988

seq1  AACCAATAAACATCAGGAGGTGGAGGGGGACCTCTACAGGGGAACTTAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATAAACATCAGGAGGTGGAGGGGGACCTCTACAGGGGAACTTAAA  1038

seq1  TTATTTATTAATAAAATCTTTCTGTAGAACAGGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTAATAAAATCTTTCTGTAGAACAGGAATTC  1076