BAC Information

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BAC

Clone NameB6Ng01-273O09
Chromosome4 (Build37)
Map Location 17,819,959 - 17,868,208
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273O09.bB6Ng01-273O09.g
ACCGA075348GA075349
length1,1621,116
definitionB6Ng01-273O09.b B6Ng01-273O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,867,039 - 17,868,208)(17,819,959 - 17,821,080)
sequence
gaattcactctgtagaccaggctgacctcgaactcagagatctgcctgcc
tctgcctcgcaagtgctgggactaaaggtgtgcaccacccccgcccagct
acttttctccttttttgttgtagaaaaaaaaagaccaaaatcgtcttggg
aatcttatctaacatattattgtctatcatgaaaggaagctgggtaggac
acaaagggaagcacgtgggagcagtaatgaaagcagagatgatggagaaa
aaccactcactctggcttgccctctgtggattgttcagtttatgccttac
attggccacatatggtactgttcacagtttaatgggcattcctacatgaa
ctaacaacttaaaagatgacccacaggccactctgatagaggtggttaca
caaatcagttctcttttccaggattctcagactgacaaccaagattcgcc
atcatagatatcctatggaaactaaggtagtttggtttttctcatataat
taattcattaagatgaattgtccgtttagcaaccaactttcatttttgcc
tatggctatgtcaacaaaaccttttgtgtgtttgtgtgttggggggtagt
tcctatgattcacaattttatttttttatgacactgggtctactggaaaa
attgaatttatcacataatgtgttcagtttaaattaagtatatgtgtcta
cacattttagagatgtttttagttcattttaagaatacaaattcataaaa
gagtacaatattttaaattctagaacttaacaagtactcatatataattg
aatgaatttctactagaatagattatcacttctcaaactgttttgggcca
aaagtgttaaatattgtttgccaagaatttagaatatgtgtatacacaga
acacgatttcttgaaaatgggtcataattctaaaacccaaaattcatttt
atgttttttagcacatatataaatctatataagactaagcagtttttatg
ttgcatctgtgtgtttttactaataaaatttattcttcacatttcttaat
gtgcataaccaagtttaaaataactctcattagtattccttccattctgt
tctatctggagagaattcctgtcctagcatgagcatttcataaaggttca
tgtcttattttt

gaattcaaatagttagtggtgctgggaagtagttttcaataccagcctag
gaactatccattcataagaatgtgttacaaacatgggcatgcagacttag
cgatcttatttagtatctgaaaaccaaatcaaagcaaacatcattctgag
tgtacatgaaccctatgggtacaagttgtattgtaggtgagcactaagtt
aaccagagccatttctttgtcagtaatattacatgcaatgtaacagacta
caattcctttcctgaaagaatttagagagtccaactataaatcctatttc
tctgcaaggcccaagtgtacatcattacatttacgggatataaaggtgtt
tatatgttttactttaaattctggatcaatattaatattcataaaacaat
gtagatgtgtagattacaatatcagctctagtgacgaggaaaagaagagg
atatgtttgcttttacatttttatatctctctctcaaaaacatctgtgat
tctgcttcttttttaatcttttaaaaatgatttatttatttgtattttat
gaatgtcggtattttgcctgcatgtgtaactgtttgattgtatgagatcc
cctgatggagttacaagcatttgtaagctgtcatgtagatgctggaaatt
gcacacagttgccttggataagtagacagtgctcttaaacacagagctgt
ctctctagcctcatctatgattttcttgattatcatttccctgcagctta
gctatgtttttgtctaacagcacacctgggtgtagatgtctatctacaga
acctttgggactctatctgaatagctagagttgaacattcattattaagg
gatttgaagaaaatacccataattatagtgacaaattaatacaaaggaga
aatacattccaaataattaacattaagctactgggcttttagttgctttc
tattctattcagaaatgcaaatgtctccaaatgagactaaaaatgtaaaa
tgtaaaacctgagcattttcagttgctgcttgtgatttaaaagtaatgtt
ttgctatgtattattcttttatgtcttgaaattatttcaatatagtgtga
tattctaattctaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17867039_17868208
seq2: B6Ng01-273O09.b_51_1212 (reverse)

seq1  AAAAATTAAGGACATGAAC--TTATGAAAAAGACCTCATGGTTAGGACAG  48
       |||| ||| |||||||||  ||||||||     ||||| | ||||||||
seq2  -AAAAATAA-GACATGAACCTTTATGAAA---TGCTCAT-GCTAGGACAG  44

seq1  GAATTCTCT-CAGTTGGAACAGATATGGA--GGATACTAATGAGAG-TAT  94
      ||||||||| ||| | ||||||| |||||  | ||||||||||||| |||
seq2  GAATTCTCTCCAGATAGAACAGA-ATGGAAGGAATACTAATGAGAGTTAT  93

seq1  TTTAGACTGGGTTATGCACATATAAGAAATTGTGAAAGAATAAATTTTAT  144
      |||| ||| |||||||||||| ||||||| |||| |||||||||||||||
seq2  TTTAAACTTGGTTATGCACAT-TAAGAAA-TGTG-AAGAATAAATTTTAT  140

seq1  TAGTAAAAACACACAAGATGCAACAT-AAAACTGCCTTTAGTCCTTATAT  193
      |||||||||||||| ||||||||||| ||||||||  ||||| |||||||
seq2  TAGTAAAAACACAC-AGATGCAACATAAAAACTGC--TTAGT-CTTATAT  186

seq1  AGATTTATATATGTTGCTTAAAAAACAT-AAATGAATTTT-GGTTTTAGA  241
      ||||||||||||| ||| |||||||||| ||||||||||| |||||||||
seq2  AGATTTATATATG-TGC-TAAAAAACATAAAATGAATTTTGGGTTTTAGA  234

seq1  TTTATGACCCATTTTCAAGAAATCGTGTTCTGTGTATACACATATTCTAA  291
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACCCATTTTCAAGAAATCGTGTTCTGTGTATACACATATTCTAA  284

seq1  ATTCTTGGCAAACAATATTTAACACTTTTGGCCCAAAACAGTTTTGAGAA  341
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTCTTGGCAAACAATATTTAACACTTTTGGCCCAAAACAG-TTTGAGAA  333

seq1  GTGATAATCTATTCTAGTAGAAATTCATTCAATTATATATGAGTACTTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATCTATTCTAGTAGAAATTCATTCAATTATATATGAGTACTTGT  383

seq1  TAAGTTCTAGAATTTAAAATATTGTACTCTTTTATGAATTTGTATTCTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTAGAATTTAAAATATTGTACTCTTTTATGAATTTGTATTCTTA  433

seq1  AAATGAACTAAAAACATCTCTAAAATGTGTAGACACATATACTTAATTTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACTAAAAACATCTCTAAAATGTGTAGACACATATACTTAATTTA  483

seq1  AACTGAACACATTATGTGATAAATTCAATTTTTCCAGTAGACCCAGTGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACACATTATGTGATAAATTCAATTTTTCCAGTAGACCCAGTGTC  533

seq1  ATAAAAAAATAAAATTGTGAATCATAGGAACTACCCCCCAACACACAAAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAATAAAATTGTGAATCATAGGAACTACCCCCCAACACACAAAC  583

seq1  ACACAAAAGGTTTTGTTGACATAGCCATAGGCAAAAATGAAAGTTGGTTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGGTTTTGTTGACATAGCCATAGGCAAAAATGAAAGTTGGTTG  633

seq1  CTAAACGGACAATTCATCTTAATGAATTAATTATATGAGAAAAACCAAAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACGGACAATTCATCTTAATGAATTAATTATATGAGAAAAACCAAAC  683

seq1  TACCTTAGTTTCCATAGGATATCTATGATGGCGAATCTTGGTTGTCAGTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAGTTTCCATAGGATATCTATGATGGCGAATCTTGGTTGTCAGTC  733

seq1  TGAGAATCCTGGAAAAGAGAACTGATTTGTGTAACCACCTCTATCAGAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCCTGGAAAAGAGAACTGATTTGTGTAACCACCTCTATCAGAGT  783

seq1  GGCCTGTGGGTCATCTTTTAAGTTGTTAGTTCATGTAGGAATGCCCATTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGGTCATCTTTTAAGTTGTTAGTTCATGTAGGAATGCCCATTA  833

seq1  AACTGTGAACAGTACCATATGTGGCCAATGTAAGGCATAAACTGAACAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAACAGTACCATATGTGGCCAATGTAAGGCATAAACTGAACAAT  883

seq1  CCACAGAGGGCAAGCCAGAGTGAGTGGTTTTTCTCCATCATCTCTGCTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGGGCAAGCCAGAGTGAGTGGTTTTTCTCCATCATCTCTGCTTT  933

seq1  CATTACTGCTCCCACGTGCTTCCCTTTGTGTCCTACCCAGCTTCCTTTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGCTCCCACGTGCTTCCCTTTGTGTCCTACCCAGCTTCCTTTCA  983

seq1  TGATAGACAATAATATGTTAGATAAGATTCCCAAGACGATTTTGGTCTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGACAATAATATGTTAGATAAGATTCCCAAGACGATTTTGGTCTTT  1033

seq1  TTTTTTCTACAACAAAAAAGGAGAAAAGTAGCTGGGCGGGGGTGGTGCAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTACAACAAAAAAGGAGAAAAGTAGCTGGGCGGGGGTGGTGCAC  1083

seq1  ACCTTTAGTCCCAGCACTTGCGAGGCAGAGGCAGGCAGATCTCTGAGTTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGTCCCAGCACTTGCGAGGCAGAGGCAGGCAGATCTCTGAGTTC  1133

seq1  GAGGTCAGCCTGGTCTACAGAGTGAATTC  1170
      |||||||||||||||||||||||||||||
seq2  GAGGTCAGCCTGGTCTACAGAGTGAATTC  1162


seq1: chr4_17819959_17821080
seq2: B6Ng01-273O09.g_66_1181

seq1  GAATTCAAATAGTTAGTGGTGCTGGGAAGTAGTTTTCAATACCAGCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGTTAGTGGTGCTGGGAAGTAGTTTTCAATACCAGCCTAG  50

seq1  GAACTATCCATTCATAAGAATGTGTTACAAACATGGGCATGCAGACTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCCATTCATAAGAATGTGTTACAAACATGGGCATGCAGACTTAG  100

seq1  CGATCTTATTTAGTATCTGAAAACCAAATCAAAGCAAACATCATTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTTATTTAGTATCTGAAAACCAAATCAAAGCAAACATCATTCTGAG  150

seq1  TGTACATGAACCCTATGGGTACAAGTTGTATTGTAGGTGAGCACTAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGAACCCTATGGGTACAAGTTGTATTGTAGGTGAGCACTAAGTT  200

seq1  AACCAGAGCCATTTCTTTGTCAGTAATATTACATGCAATGTAACAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGCCATTTCTTTGTCAGTAATATTACATGCAATGTAACAGACTA  250

seq1  CAATTCCTTTCCTGAAAGAATTTAGAGAGTCCAACTATAAATCCTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTTTCCTGAAAGAATTTAGAGAGTCCAACTATAAATCCTATTTC  300

seq1  TCTGCAAGGCCCAAGTGTACATCATTACATTTACGGGATATAAAGGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGGCCCAAGTGTACATCATTACATTTACGGGATATAAAGGTGTT  350

seq1  TATATGTTTTACTTTAAATTCTGGATCAATATTAATATTCATAAAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTTACTTTAAATTCTGGATCAATATTAATATTCATAAAACAAT  400

seq1  GTAGATGTGTAGATTACAATATCAGCTCTAGTGACGAGGAAAAGAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTGTAGATTACAATATCAGCTCTAGTGACGAGGAAAAGAAGAGG  450

seq1  ATATGTTTGCTTTTACATTTTTATATCTCTCTCTCAAAAACATCTGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTGCTTTTACATTTTTATATCTCTCTCTCAAAAACATCTGTGAT  500

seq1  TCTGCTTCTTTTTTAATCTTTTAAAAATGATTTATTTATTTGTATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTTTTTTAATCTTTTAAAAATGATTTATTTATTTGTATTTTAT  550

seq1  GAATGTCGGTATTTTGCCTGCATGTGTAACTGTTTGATTGTATGAGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCGGTATTTTGCCTGCATGTGTAACTGTTTGATTGTATGAGATCC  600

seq1  CCTGATGGAGTTACAAGCATTTGTAAGCTGTCATGTAGATGCTGGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGGAGTTACAAGCATTTGTAAGCTGTCATGTAGATGCTGGAAATT  650

seq1  GCACACAGTTGCCTTGGATAAGTAGACAGTGCTCTTAAACACAGAGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTTGCCTTGGATAAGTAGACAGTGCTCTTAAACACAGAGCTGT  700

seq1  CTCTCTAGCCTCATCTATGATTTTCTTGATTATCATTTCCCTGCAGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCCTCATCTATGATTTTCTTGATTATCATTTCCCTGCAGCTTA  750

seq1  GCTATGTTTTTGTCTAACAGCACACCTGGGTGTAGATGTCTATCTACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTTTTTGTCTAACAGCACACCTGGGTGTAGATGTCTATCTACAGA  800

seq1  ACCTTTGGGACTCTATCTGAATAGCTAGAGTTGAACATTCATTATTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGGACTCTATCTGAATAGCTAGAGTTGAACATTCATTATTAAGG  850

seq1  GATTTGAAGAAAATACCCATAATTATAGTGACAAATTAAATACAAAGGAG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATTTGAAGAAAATACCCATAATTATAGTGACAAATT-AATACAAAGGAG  899

seq1  AAATACATTCCAAATAATTAACATTAAGCTACTGGGCTTTTAGTTGCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTCCAAATAATTAACATTAAGCTACTGGGCTTTTAGTTGCTTT  949

seq1  CTATTCTATTCAGAAATGCAAATGTCTCCAAATGAGACTAAAAATGTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTATTCAGAAATGCAAATGTCTCCAAATGAGACTAAAAATGTAAA  999

seq1  ATGTAAAACCTGAGCATTTTCAG-TGCTGCTTGGTGATTTAAAAGTAATG  1049
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  ATGTAAAACCTGAGCATTTTCAGTTGCTGCTT-GTGATTTAAAAGTAATG  1048

seq1  TTTTGCTTATGTTATATTTCTTTTATTGTCCTTTGAAATTATTT-AATAT  1098
      |||||| |||| |||  |||||||| ||||  |||||||||||| |||||
seq2  TTTTGC-TATG-TATTATTCTTTTA-TGTC--TTGAAATTATTTCAATAT  1093

seq1  AGTTGTGATATTCTAATTCTAATA  1122
      || |||||||||||||||||||||
seq2  AG-TGTGATATTCTAATTCTAATA  1116


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