BAC Information

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BAC

Clone NameB6Ng01-274J09
Chromosome4 (Build37)
Map Location 137,918,407 - 138,020,788
singlet/doubletdoublet
Overlap geneCda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1
Upstream geneLOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1
Downstream geneLOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274J09.bB6Ng01-274J09.g
ACCGA075848GA075849
length1,0011,111
definitionB6Ng01-274J09.b B6Ng01-274J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,918,407 - 137,919,397)(138,019,692 - 138,020,788)
sequence
gaattcatttccatagaccagactcagagaaagagagagagagagagaga
gagagagagagagagagagagagatctgcctgcctctgcctccccgagtg
ctggaattaaaagtgtttgtcactaggttacagctacacacttttttttt
taacctctgagatagtaagttttgtatcaagatgttagatctcttctgga
agtctgttttttgtttgttttgttttgttgggttttaaaaaatatttact
tatttattttatgtatatcacacatacacacacacacacacacacacaca
cacacgtatatgacttatgtgccagaagagggcatcaaatcccattacag
atggttgtgagccaccatttggttgctgggaactgaactcaggacctttg
gaagagcagtcagtgctcttaaccactgagccatctctccagccctggaa
gcttgttttgatgtttttctgcgactgaatattcaccattcagcagacct
ttcctactcctgacagtctggagcaagccacccttccgacccttccgaga
aacttgccctgggcagcaaagcctagcctgaccacacctaccgaaggcat
gactcaggcaccagctcacagctagaaaccttcacctcaggaaagacgtg
cctcagtgaactttcaaacaccttcagcctctactcaaggacagctacga
tgggtgacccaacacaaaattgtaagcattatgagatttgggggctgaag
cacttggctctatagctatatgcttaacccttgcagataatcatagtttg
gtttgcagcacacacagtaggcagctcccctcagcctgggaactccgggt
ccaggggatcagatgccttctggcctctgtggggccattgctgttttgtg
ttcatacctaaacctgttgacggatacatattacacattaaaactaatct
ttaaaaaacagaaattttttttttgcagggtggtgggtggcaccatgcct
g
gaattcttgtggccttggctgccaggaaagcacagtcccgggtgccactc
cccgcactgagggagggaagctccccggaactaccctggccaggcaacct
gcttgcctggcccacatctccgcccagccgtccccatggcaaccggttgg
cctggtccagggttcaccgcctagtagagccttggccttccctcccccac
cccacccccaaacccgcttgaggatgaacacttcacaatctatccctgag
ctccgggggctgggagcctcgcgtgtagataaataaacaaataataaaaa
gctagttgtgagaccccctccgtgcactggggttgcggggaccatgcgca
taagggaccaaacttagctggatttcagtcccagtgggaatgtaggcagg
tgcctttgctgctccgcgcctcattgttctgtatctgtagaatggggttg
taaacaataactacctaggagaattgctgaaaagatttagacatttaaat
ggggacaggacagagcaaccactggtctacaactagaaatgaggggaaag
attttattttattttattttttacatagagaaacgagtcccagagagaca
aaatatacttgctagggatggtggtcacacagccagccctggccgaaagg
aaggaaatcatgatctctttgtgaaactcaaaagctgggcgctggcagcg
atctccctgggactcccctagaggttgcctgcacttcccctgggcccacc
cccaccctcttgaaattcagtcattgaaaggtcacagaccagacactgtg
gttttctggaccggaaagggcctccctctagcaagcactgtctccccagt
gccagcacaagcccccgccccctctctgcctgccagaaaaaaaaattgtt
gaatgaatatggacttaattaatgaatttcactgagtttcatcttccttc
attaaacacccttcccagggtaaaactcctgaaccctttggccacccagc
tgcgttccacagggcattttcttttcccttagctgtatccggggtgttcc
gcggtctgcctttctcccccccttcatcgactgtccactcttccattcaa
gctattctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_137918407_137919397
seq2: B6Ng01-274J09.b_45_1045

seq1  GAATTCATTTCCATAGACCAGACTCAGAGAAAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCATAGACCAGACTCAGAGAAAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGATCTGCCTGCCTCTGCCTCCCCGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGATCTGCCTGCCTCTGCCTCCCCGAGTG  100

seq1  CTGGAATTAAAAGTGTTTGTCACTAGGTTACAGCTACACACTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTAAAAGTGTTTGTCACTAGGTTACAGCTACACACTTTTTTTTT  150

seq1  TAACCTCTGAGATAGTAAGTTTTGTATCAAGATGTTAGATCTCTTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTGAGATAGTAAGTTTTGTATCAAGATGTTAGATCTCTTCTGGA  200

seq1  AGTCTGTTTTTTGTTTGTTTTGTTTTGTTGGGTTTTAAAAAATATTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTTTTGTTTGTTTTGTTTTGTTGGGTTTTAAAAAATATTTACT  250

seq1  TATTTATTTTATGTATATCACACATACACACACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTATGTATATCACACATACACACACACACACACACACACACA  300

seq1  CACACGTATATGACTTATGTGCCAGAAGAGGGCATCAAATCCCATTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTATATGACTTATGTGCCAGAAGAGGGCATCAAATCCCATTACAG  350

seq1  ATGGTTGTGAGCCACCATTTGGTTGCTGGGAACTGAACTCAGGACCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCACCATTTGGTTGCTGGGAACTGAACTCAGGACCTTTG  400

seq1  GAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGGAA  450

seq1  GCTTGTTTTGATGTTTTTCTGCGACTGAATATTCACCATTCAGCAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTTGATGTTTTTCTGCGACTGAATATTCACCATTCAGCAGACCT  500

seq1  TTCCTACTCCTGACAGTCTGGAGCAAGCCACCCTTCCGACCCTTCCGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTCCTGACAGTCTGGAGCAAGCCACCCTTCCGACCCTTCCGAGA  550

seq1  AACTTGCCCTGGGCAGCAAAGCCTAGCCTGACCACACCTACCGAAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCCTGGGCAGCAAAGCCTAGCCTGACCACACCTACCGAAGGCAT  600

seq1  GACTCAGGCACCAGCTCACAGCTAGAAACCTTCACCTCAGGAAAGACGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGCACCAGCTCACAGCTAGAAACCTTCACCTCAGGAAAGACGTG  650

seq1  CCTCAGTGAACTTTCAAACACCTTCAGCCTCTACTCAAGGACAGCTACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGAACTTTCAAACACCTTCAGCCTCTACTCAAGGACAGCTACGA  700

seq1  T-GGCGACCCAACACAAAATTGT-AGCATTATGAGATTTGGGGGCTGAAG  748
      | || |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGGTGACCCAACACAAAATTGTAAGCATTATGAGATTTGGGGGCTGAAG  750

seq1  CAC-TGGCTCAGTAGCTATATGCT--AACCTTGCAGAGAACCATAGTTTG  795
      ||| ||||||  ||||||||||||  | ||||||||| || |||||||||
seq2  CACTTGGCTCTATAGCTATATGCTTAACCCTTGCAGATAATCATAGTTTG  800

seq1  GTTTGCAGCACACACAGCAGGCAGCT-CCCTCAGCCT-GGAACTCCAGGT  843
      ||||||||||||||||| |||||||| |||||||||| |||||||| |||
seq2  GTTTGCAGCACACACAGTAGGCAGCTCCCCTCAGCCTGGGAACTCCGGGT  850

seq1  CCAGGGGATCAGATGCCTTCTGGCCTCTGT-GGGCATTTGCAGTTATGTG  892
      |||||||||||||||||||||||||||||| ||||  |||| ||| ||||
seq2  CCAGGGGATCAGATGCCTTCTGGCCTCTGTGGGGCCATTGCTGTTTTGTG  900

seq1  TTCATACATAAACATGTAGACAGACACATA-TACACAATTAAAAATAAAT  941
      ||||||| ||||| ||| ||| || ||||| ||||| ||||||| | |||
seq2  TTCATACCTAAACCTGTTGACGGATACATATTACAC-ATTAAAACT-AAT  948

seq1  CTTTAAAAAACA-AGAGATTTTTTTTGCAGGGTGGT-GGTGGTA-CATGC  988
      |||||||||||| | |  |||||||||||||||||| ||||| | |||||
seq2  CTTTAAAAAACAGAAATTTTTTTTTTGCAGGGTGGTGGGTGGCACCATGC  998

seq1  CTG  991
      |||
seq2  CTG  1001

seq1: chr4_138019692_138020788
seq2: B6Ng01-274J09.g_69_1179 (reverse)

seq1  AAGAGAATAGC-TGATGGGAGGGGTGGGCAGTCGATGA--GGGGGGAGAA  47
      ||||||||||| |||  ||| | |||| ||||||||||  ||||||||||
seq2  AAGAGAATAGCTTGAATGGAAGAGTGGACAGTCGATGAAGGGGGGGAGAA  50

seq1  A-GCAGACCGCG--ACAACCCGGATACAGCT-AGGGAAA--GAAATGCCC  91
      | ||||||||||  ||| ||||||||||||| |||||||   ||||||||
seq2  AGGCAGACCGCGGAACACCCCGGATACAGCTAAGGGAAAAGAAAATGCCC  100

seq1  TGTGGGACGCAGCTGGGTGGCCAAGGGTTTCAGGAG-TTTACCCTGGG-A  139
      ||||| |||||||||||||||||| || |||||||| ||||||||||| |
seq2  TGTGGAACGCAGCTGGGTGGCCAAAGGGTTCAGGAGTTTTACCCTGGGAA  150

seq1  GGGTGTTTTATGAAGG-AGATG-AACTCAGTG-AATTCATTAATTAAGTC  186
      |||||||| ||||||| ||||| ||||||||| |||||||||||||||||
seq2  GGGTGTTTAATGAAGGAAGATGAAACTCAGTGAAATTCATTAATTAAGTC  200

seq1  CATATTCATTCAACAATTTTTTTTTTCTGGCAGGCAGAGAGGGGGC-GGG  235
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CATATTCATTCAACAA-TTTTTTTTTCTGGCAGGCAGAGAGGGGGCGGGG  249

seq1  GCTTGTGCTTGGCACTGGGGAGACAGTGCTTGCTAGAGGGAGGCCCTTTC  285
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGC-TGGCACTGGGGAGACAGTGCTTGCTAGAGGGAGGCCCTTTC  298

seq1  CGGTCCAG-AAACCACAGTGTCTGGTCTGTGACCTTTCAATGACTGAATT  334
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCAGAAAACCACAGTGTCTGGTCTGTGACCTTTCAATGACTGAATT  348

seq1  TCAAGAGGGTGGGGGTGGGCCCAGGGGAAGTGCAGGCAACCTCTAGGGGA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGGTGGGGGTGGGCCCAGGGGAAGTGCAGGCAACCTCTAGGGGA  398

seq1  GTCCCAGGGAGATCGCTGCCAGCGCCCAGCTTTTGAGTTTCACAAAGAGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGGAGATCGCTGCCAGCGCCCAGCTTTTGAGTTTCACAAAGAGA  448

seq1  TCATGATTTCCTTCCTTTCGGCCAGGGCTGGCTGTGTGACCACCATCCCT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTTCCTTCCTTTCGGCCAGGGCTGGCTGTGTGACCACCATCCCT  498

seq1  AGCAAGTATATTTTGTCTCTCTGGGACTCGTTTCTCTATGTAAAAAATAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTATATTTTGTCTCTCTGGGACTCGTTTCTCTATGTAAAAAATAA  548

seq1  AATAAAATAAAATCTTTCCCCTCATTTCTAGTTGTAGACCAGTGGTTGCT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAATCTTTCCCCTCATTTCTAGTTGTAGACCAGTGGTTGCT  598

seq1  CTGTCCTGTCCCCATTTAAATGTCTAAATCTTTTCAGCAATTCTCCTAGG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGTCCCCATTTAAATGTCTAAATCTTTTCAGCAATTCTCCTAGG  648

seq1  TAGTTATTGTTTACAACCCCATTCTACAGATACAGAACAATGAGGCGCGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTGTTTACAACCCCATTCTACAGATACAGAACAATGAGGCGCGG  698

seq1  AGCAGCAAAGGCACCTGCCTACATTCCCACTGGGACTGAAATCCAGCTAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAAGGCACCTGCCTACATTCCCACTGGGACTGAAATCCAGCTAA  748

seq1  GTTTGGTCCCTTATGCGCATGGTCCCCGCAACCCCAGTGCACGGAGGGGG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCCCTTATGCGCATGGTCCCCGCAACCCCAGTGCACGGAGGGGG  798

seq1  TCTCACAACTAGCTTTTTATTATTTGTTTATTTATCTACACGCGAGGCTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAACTAGCTTTTTATTATTTGTTTATTTATCTACACGCGAGGCTC  848

seq1  CCAGCCCCCGGAGCTCAGGGATAGATTGTGAAGTGTTCATCCTCAAGCGG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCCGGAGCTCAGGGATAGATTGTGAAGTGTTCATCCTCAAGCGG  898

seq1  GTTTGGGGGTGGGGTGGGGGAGGGAAGGCCAAGGCTCTACTAGGCGGTGA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGGTGGGGTGGGGGAGGGAAGGCCAAGGCTCTACTAGGCGGTGA  948

seq1  ACCCTGGACCAGGCCAACCGGTTGCCATGGGGACGGCTGGGCGGAGATGT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGACCAGGCCAACCGGTTGCCATGGGGACGGCTGGGCGGAGATGT  998

seq1  GGGCCAGGCAAGCAGGTTGCCTGGCCAGGGTAGTTCCGGGGAGCTTCCCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGCAAGCAGGTTGCCTGGCCAGGGTAGTTCCGGGGAGCTTCCCT  1048

seq1  CCCTCAGTGCGGGGAGTGGCACCCGGGACTGTGCTTTCCTGGCAGCCAAG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTGCGGGGAGTGGCACCCGGGACTGTGCTTTCCTGGCAGCCAAG  1098

seq1  GCCACAAGAATTC  1097
      |||||||||||||
seq2  GCCACAAGAATTC  1111