BAC Information

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BAC

Clone NameB6Ng01-274J20
Chromosome4 (Build37)
Map Location 29,442,984 - 29,609,110
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274J20.bB6Ng01-274J20.g
ACCGA075870GA075871
length1,1401,114
definitionB6Ng01-274J20.b B6Ng01-274J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,607,968 - 29,609,110)(29,442,984 - 29,444,111)
sequence
gaattcaggccaactcatatgcacaaaacaacaacaaactaataataaaa
aagaaaagaaacgatgaatagatttacaaacaggaactagaaagacaaaa
gacattgctgaagcagattaaaaagatctgaaactgaatgtgtgtcttga
gactctgatgtgggtagctcaaagaagagaataaattaagcgaaagacac
aatgtaaacacataatatatttaagggaattaagagtcctaggaacccta
gatctcatatattgggagtgcagatgcacttgacaccaagaaatgaatcc
aatggtctgtctttaggcatgcaaatgtagtatgggattgttatattttc
tttaaagtaaaaaaggaagttctgccatttcagatgaaaataaaaattaa
acaaaacattaaaatctctttctaggagagtcatattcatgtcaaatact
aactcttgttattgcattaattaatttacaccttatcaactcctttaatt
ccaataagaggaagtggacccaaggctaccagatgcttctcaaacatctc
ttgaatgaatgaatggattaagctgattgatttgaccaagcacttacaga
acatctcttaccagtacaactgggagcacttgtttgtcagtattatacag
tagttttttcctgaggttaaaaccttctacttgaagggaaacttcttaag
ataggatgttttcagggaggtgaaacaatagaatgttctaaaccaagagg
acataccacatggctccttaggacaagaagtaaacaactcaattaagctc
aggaagtccctgaaactgaccagcttcactgggccactcccctccccaaa
gtaaacagtaaagactgaagagagttactctcagatgactcccaggcaag
actaactgcatggaagagaaaagaagaagcagaatgtgcacctaaaacat
gaagatgaactgagctgtctgggaaaaggctctggcttcctgatgtatct
ggaaagcacacactgcaaccagtggagctgccttcagcgtgtgcagtgtg
ctcagtttctactttagtgatctctcaggccactgaaggtagacttagtt
atacagctacatagttaccattctattcctataggtaacc

gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
tatctgatttgggataggtaaatatgctttcccaatctgttggtggcctt
cttattgggctggagagatggctcagccgttaaaggctaggctcacagcc
agcagcctttaattactttttagaaatgttcagagttaaagttcagcttg
gacgggaacttacttttagtccttgaacttataacaatgcctgtgcctca
gccttctgtagatattcaggcataagctgccaaccccacttttatgtgat
ttacctgtgtgaagaatgattataagaaaagattataagcattttgtttt
ttattcattctgcattaacaatcataaaaagtgtccagtgatggacattt
ctgtgtacatatgctttttaagaatataggaagaaatagcaatattaaaa
tgtgaagtcctcttgaccaatgcttcagaagaggtaacagtgacctatac
aataagtacaattaatacagtctggattagctctatggagaaaaaggaaa
tacagaaaacaattttaagaaaggagtgaaaatgtgcaaatgaatccaac
aatacctgaaaaatgtacacaatttataaatgtctaagtatttccttctt
tctgtaattcatagttaattcagttacattctgatttatcataaaggaaa
ctaagataaaagagaaatatcttgaaatgaaatatgaaaaaacttaagtg
aaattttattgacatgaatgattgaagaattttcgtctccatcttaggaa
aaatcctcagtgcatccaaaggtaagaaagatctccacagtctggagtgc
agattccccaggagtgtgctttaggtaaatttataaaacccttcttagct
tctaacttaatatttgagatatggcaacaggattcagtggggtaaataag
tgagtatacataggcaatgctgtacatgtttatattagacaatttagaaa
cagtgattgtgattatgagggctagtagtagaattttgcctatcattcat
tcaaattcacatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29607968_29609110
seq2: B6Ng01-274J20.b_47_1186 (reverse)

seq1  GGTTACCTATAGGAATAGAAATGGT-ACTATGTTAGCTGTATAACTAAAG  49
      |||||||||||||||||| |||||| |||||| ||||||||||||| |||
seq2  GGTTACCTATAGGAATAG-AATGGTAACTATG-TAGCTGTATAACT-AAG  47

seq1  TCTACCTTCCAGTGG-CTGAGAGATCACTAAAGTTAGAAACCTGAAGCAC  98
      |||||||| |||||| ||||||||||||||||| |||||| ||| |||||
seq2  TCTACCTT-CAGTGGCCTGAGAGATCACTAAAG-TAGAAA-CTG-AGCAC  93

seq1  ACTGCACACGCTGAAGGCAGCTCCACTGGTTGCAGTGTGTGCTTTCCAGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACACGCTGAAGGCAGCTCCACTGGTTGCAGTGTGTGCTTTCCAGA  143

seq1  TACATCAGGAAGCCAGAGCCTTTT-CCAGACAGCTCAGTTCATCTTCATG  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACATCAGGAAGCCAGAGCCTTTTCCCAGACAGCTCAGTTCATCTTCATG  193

seq1  TTTTA-GTGCACATTCTGCTTCTTCTTTTCTCTTCCATGCAGTTAGTCTT  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTGCACATTCTGCTTCTTCTTTTCTCTTCCATGCAGTTAGTCTT  243

seq1  GCCTGGGAGTCATCTGAGAGTAACTCTCTTCAGTCTTTACTGTTTACTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGTCATCTGAGAGTAACTCTCTTCAGTCTTTACTGTTTACTTT  293

seq1  GGGGAGGGGAGTGGCCCAGTGAAGCTGGTCAGTTTCAGGGACTTCCTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGAGTGGCCCAGTGAAGCTGGTCAGTTTCAGGGACTTCCTGAG  343

seq1  CTTAATTGAGTTGTTTACTTCTTGTCCTAAGGAGCCATGTGGTATGTCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGAGTTGTTTACTTCTTGTCCTAAGGAGCCATGTGGTATGTCCT  393

seq1  CTTGGTTTAGAACATTCTATTGTTTCACCTCCCTGAAAACATCCTATCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTAGAACATTCTATTGTTTCACCTCCCTGAAAACATCCTATCTT  443

seq1  AAGAAGTTTCCCTTCAAGTAGAAGGTTTTAACCTCAGGAAAAAACTACTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTCCCTTCAAGTAGAAGGTTTTAACCTCAGGAAAAAACTACTG  493

seq1  TATAATACTGACAAACAAGTGCTCCCAGTTGTACTGGTAAGAGATGTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTGACAAACAAGTGCTCCCAGTTGTACTGGTAAGAGATGTTCT  543

seq1  GTAAGTGCTTGGTCAAATCAATCAGCTTAATCCATTCATTCATTCAAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGCTTGGTCAAATCAATCAGCTTAATCCATTCATTCATTCAAGAG  593

seq1  ATGTTTGAGAAGCATCTGGTAGCCTTGGGTCCACTTCCTCTTATTGGAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAGAAGCATCTGGTAGCCTTGGGTCCACTTCCTCTTATTGGAAT  643

seq1  TAAAGGAGTTGATAAGGTGTAAATTAATTAATGCAATAACAAGAGTTAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGTTGATAAGGTGTAAATTAATTAATGCAATAACAAGAGTTAGT  693

seq1  ATTTGACATGAATATGACTCTCCTAGAAAGAGATTTTAATGTTTTGTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACATGAATATGACTCTCCTAGAAAGAGATTTTAATGTTTTGTTTA  743

seq1  ATTTTTATTTTCATCTGAAATGGCAGAACTTCCTTTTTTACTTTAAAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTCATCTGAAATGGCAGAACTTCCTTTTTTACTTTAAAGAA  793

seq1  AATATAACAATCCCATACTACATTTGCATGCCTAAAGACAGACCATTGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACAATCCCATACTACATTTGCATGCCTAAAGACAGACCATTGGA  843

seq1  TTCATTTCTTGGTGTCAAGTGCATCTGCACTCCCAATATATGAGATCTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTGGTGTCAAGTGCATCTGCACTCCCAATATATGAGATCTAG  893

seq1  GGTTCCTAGGACTCTTAATTCCCTTAAATATATTATGTGTTTACATTGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTAGGACTCTTAATTCCCTTAAATATATTATGTGTTTACATTGTG  943

seq1  TCTTTCGCTTAATTTATTCTCTTCTTTGAGCTACCCACATCAGAGTCTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCGCTTAATTTATTCTCTTCTTTGAGCTACCCACATCAGAGTCTCA  993

seq1  AGACACACATTCAGTTTCAGATCTTTTTAATCTGCTTCAGCAATGTCTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACATTCAGTTTCAGATCTTTTTAATCTGCTTCAGCAATGTCTTT  1043

seq1  TGTCTTTCTAGTTCCTGTTTGTAAATCTATTCATCGTTTCTTTTCTTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTAGTTCCTGTTTGTAAATCTATTCATCGTTTCTTTTCTTTTT  1093

seq1  TATTATTAGTTTGTTGTTGTTTTGTGCATATGAGTTGGCCTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAGTTTGTTGTTGTTTTGTGCATATGAGTTGGCCTGAATTC  1140


seq1: chr4_29442984_29444111
seq2: B6Ng01-274J20.g_65_1178

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  TATCTGATTTGGGATAGGTAAATATGCTTTCCCAATCTGTTGGTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTGGGATAGGTAAATATGCTTTCCCAATCTGTTGGTGGCCTT  150

seq1  CTTATTGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAGCC  200

seq1  AGCAGCCTTTAATTACTTTTTAGAAATGTTCAGAGTTAAAGTTCAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTTTAATTACTTTTTAGAAATGTTCAGAGTTAAAGTTCAGCTTG  250

seq1  GACGGGAACTTACTTTTAGTCCTTGAACTTATAACAATGCCTGTGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGAACTTACTTTTAGTCCTTGAACTTATAACAATGCCTGTGCCTCA  300

seq1  GCCTTCTGTAGATATTCAGGCATAAGCTGCCAACCCCACTTTTATGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGTAGATATTCAGGCATAAGCTGCCAACCCCACTTTTATGTGAT  350

seq1  TTACCTGTGTGAAGAATGATTATAAGAAAAGATTATAAGCATTTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTGTGAAGAATGATTATAAGAAAAGATTATAAGCATTTTGTTTT  400

seq1  TTATTCATTCTGCATTAACAATCATAAAAAGTGTCCAGTGATGGACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTCTGCATTAACAATCATAAAAAGTGTCCAGTGATGGACATTT  450

seq1  CTGTGTACATATGCTTTTTAAGAATATAGGAAGAAATAGCAATATTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACATATGCTTTTTAAGAATATAGGAAGAAATAGCAATATTAAAA  500

seq1  TGTGAAGTCCTCTTGACCAATGCTTCAGAAGAGGTAACAGTGACCTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTCCTCTTGACCAATGCTTCAGAAGAGGTAACAGTGACCTATAC  550

seq1  AATAAGTACAATTAATACAGTCTGGATTAGCTCTATGGAGAAAAAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTACAATTAATACAGTCTGGATTAGCTCTATGGAGAAAAAGGAAA  600

seq1  TACAGAAAACAATTTTAAGAAAGGAGTGAAAATGTGCAAATGAATCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAACAATTTTAAGAAAGGAGTGAAAATGTGCAAATGAATCCAAC  650

seq1  AATACCTGAAAAATGTACACAATTTATAAATGTCTAAGTATTTCCTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGAAAAATGTACACAATTTATAAATGTCTAAGTATTTCCTTCTT  700

seq1  TCTGTAATTCATAGTTAATTCAGTTACATTCTGATTTATCATAAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTCATAGTTAATTCAGTTACATTCTGATTTATCATAAAGGAAA  750

seq1  CTAAGATAAAAGAGAAATATCTTGAAATGAAATATGAAAAAACTTAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAAAAGAGAAATATCTTGAAATGAAATATGAAAAAACTTAAGTG  800

seq1  AAATTTTATTGACATGAATGATTGAAGAATTTTCGTCTCCATCTTAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATTGACATGAATGATTGAAGAATTTTCGTCTCCATCTTAGGAA  850

seq1  AAATCCTCAGTGCATCCAAAGGTAAGAAAGATCTCCACAGTCTGGAGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCAGTGCATCCAAAGGTAAGAAAGATCTCCACAGTCTGGAGTGC  900

seq1  AGATTCCCCAGGAGTGTGCTTTAGGTAAATTTATAAAACCCTTCTTAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCCAGGAGTGTGCTTTAGGTAAATTTATAAAACCCTTCTTAGCT  950

seq1  TCTAACTTAAATATTTGAGATATTGGCAACAGGATTCAGT-GGGTAAATA  999
      |||||||| ||||||||||||| ||||||||||||||||| |||||||||
seq2  TCTAACTT-AATATTTGAGATA-TGGCAACAGGATTCAGTGGGGTAAATA  998

seq1  AGTGAGTATACATAGGCAATGCTGTACATGTTTAAATAAATAAAAACAAA  1049
      |||||||||||||||||||||||||||||||||| ||      | |||| 
seq2  AGTGAGTATACATAGGCAATGCTGTACATGTTTATAT-----TAGACAA-  1042

seq1  ATTTTAGAAACAGTGATTGTGATTTATGAGGGCTAAGTAGTTAAGAATTT  1099
        |||||||||||||||||||| ||||||||||| ||||||  |||||||
seq2  --TTTAGAAACAGTGATTGTGA-TTATGAGGGCT-AGTAGT--AGAATTT  1086

seq1  TGCTTATCATTTCATTCAATTCAACATTA  1128
      ||| ||||| ||||||||| |  ||||||
seq2  TGCCTATCA-TTCATTCAAATTCACATTA  1114


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