BAC Information

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BAC

Clone NameB6Ng01-274K05
Chromosome4 (Build37)
Map Location 131,889,440 - 131,890,467
singlet/doubletsinglet
Overlap geneRcc1
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1
Downstream geneSnhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274K05.bB6Ng01-274K05.g
ACCGA075888GA075889
length1,0201,044
definitionB6Ng01-274K05.b B6Ng01-274K05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccgtgctgggggttacagataaaaaaatgaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagacaaaga
ggagattcatctagttacttgggttataaaatcagtcaacaaaaaatttg
gagtcgggtgtggtggcgcacgcctttaatcccagcactcgggaggcaga
ggcaggtggatttctgagttcgaggccagcctggtctacagagtgagttc
caggacagccagggctacacagagaaaccctgtctcgaaaaaaaaaaaaa
acaaaaaaacaaacaaacaaacaaaaaaaattgaccacaaaaggtgcaga
tccatagggaattgcaaactctgaatgattttcataaatattgggagata
ttaactggctgaggcctacaataaactaagtacatatgagttaagtaatt
tgtttcaaacattgcaaggagattggaatttaaactgtccaagatatcta
acagttgaagaaaaaaaaatttttaactcttgtagatcaaagactgcaag
aggcacatgtggatcgaattgatcctaaacttgagtgtattctgttcata
ttaccttcaactcattctcatactaggctcattgtacaaagggaagacag
tattatagaatggattttcttagtttataaacaaagtaaaaaattgaaga
cacatctctgaactaattataaaaggtagaataaggagctggagagatgg
cgcagtggttaagagcacagactgctcttccagaggtcccgagttcaaat
cccagcaaccacatggtggctcacaaccatctgtaatggggatccgatgc
ccttttctggtgtgtctgaagacagcgacagtgtactcacatacatgaaa
taaataaataaatctatctttaaataaggataatagatacataaataatt
ctatctttagaataagatataagattacatcaattgtcaggacagaatca
gctgaaattggtggcacctc
gaattccaccaagtcctgggtaggcttctccggtggccagcatcacacag
tctgcatggattcggaaggtaggactcccatgtcttctgcatcttaggga
cagtagtccctaagagccgcatcactaggattgtggtttgggccagacat
agatttgcatccatgagggttgtcgtggtgcttccgagtatgaaggcaca
ggggagttgtgtagagtcttacctcccgtggtgtgcattcatcttactta
gcacatgcccccggctgatggtcttttctccttcttcccacagggaaggc
gtacagcctgggccgggctgagtacgggcgcctgggccttggggagggtg
ctgaggagaagagcatacccaccctcatttcccggctgcccgtggtctcc
tcagtggcctgtggggcttctgtgggttatgctgtgtccaaggatggtaa
gtggggctcctcagacctggttgggttttggaaagtgggggggtcatgat
atctagcaaattccttggtgtgctgtatctcctgtcacagggagtcagat
gcagtgttagagatgacacagttttgacactgactctcagacgctctggc
atgtttttgcttttgtttttgagacagagtctcaccatgtagaccaggct
agcctggaactcatggaggcccacctgcctctgcttctgccgtttgagtg
cagggatcaaaggtctgttccatcatgcttggctcatgaatttttttttt
aatgtctatgtttgttttacctacatgtatgtctatttactgtgtatgta
cttggtgcctacagaggccagaagagggtaccagatcccctggggactgg
agttaatgatggttgtgagcttaccatgtgggtcctggcctgtccagcag
aagagggttgttgacacatagcagccaaagccttgagaaatgttgcatag
ccagtaaactttcagatttcagcttggttaaaggtgtcttggtgcttaac
tggaaaggactttcctctatgatagtgggagtttgccactgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131889440_131890467
seq2: B6Ng01-274K05.g_65_1108 (reverse)

seq1  GTGCAGT-GCAAACT-CCACT-TCAT-GAGG-AAGTCC-TTCCAGATAAG  44
      ||||||| ||||||| ||||| |||| |||| |||||| |||||| ||||
seq2  GTGCAGTGGCAAACTCCCACTATCATAGAGGAAAGTCCTTTCCAGTTAAG  50

seq1  CAC--AGACACC-TTAACCAGCCTGAAATCTGAAGGTTTCCTGGCTATGC  91
      |||  ||||||| |||||||  |||||||||||| |||| ||||||||||
seq2  CACCAAGACACCTTTAACCAAGCTGAAATCTGAAAGTTTACTGGCTATGC  100

seq1  -ACCTTTCTC-AGGCTTTGGCTGCTATGTGTCAAC-ACCCTCTTCTGCTG  138
       || |||||| |||||||||||||||||||||||| ||||||||||||||
seq2  AACATTTCTCAAGGCTTTGGCTGCTATGTGTCAACAACCCTCTTCTGCTG  150

seq1  GACAGGCCAGGACCCACATGGT-AGCTCACAACCATCATTAACTCCAGT-  186
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  GACAGGCCAGGACCCACATGGTAAGCTCACAACCATCATTAACTCCAGTC  200

seq1  CCCAGGGGATCTGGTACCCTCTTCTGGCCTCTGTAGGCACCAAGTACATA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGATCTGGTACCCTCTTCTGGCCTCTGTAGGCACCAAGTACATA  250

seq1  CACAGTAAATAGACATACATGTAGGTAAAAC-AACATAGACATT-AAAAA  284
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CACAGTAAATAGACATACATGTAGGTAAAACAAACATAGACATTAAAAAA  300

seq1  AAAATTCATGAGCCAAGCATGATGGAACAGACCTTTGATCCCTGCACTCA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATGAGCCAAGCATGATGGAACAGACCTTTGATCCCTGCACTCA  350

seq1  AACGGCAGAAGCAGAGGCAGGTGGGCCTCCATGAGTTCCAGGCTAGCCTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCAGAAGCAGAGGCAGGTGGGCCTCCATGAGTTCCAGGCTAGCCTG  400

seq1  GTCTACATGGTGAGACTCTGTCTCAAAAACAAAAGCAAAAACATGCCAGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATGGTGAGACTCTGTCTCAAAAACAAAAGCAAAAACATGCCAGA  450

seq1  GCGTCTGAGAGTCAGTGTCAAAACTGTGTCATCTCTAACACTGCATCTGA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGAGAGTCAGTGTCAAAACTGTGTCATCTCTAACACTGCATCTGA  500

seq1  CTCCCTGTGACAGGAGATACAGCACACCAAGGAATTTGCTAGATATCATG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTGACAGGAGATACAGCACACCAAGGAATTTGCTAGATATCATG  550

seq1  ACCCCCCCACTTTCCAAAACCCAACCAGGTCTGAGGAGCCCCACTTACCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCACTTTCCAAAACCCAACCAGGTCTGAGGAGCCCCACTTACCA  600

seq1  TCCTTGGACACAGCATAACCCACAGAAGCCCCACAGGCCACTGAGGAGAC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGACACAGCATAACCCACAGAAGCCCCACAGGCCACTGAGGAGAC  650

seq1  CACGGGCAGCCGGGAAATGAGGGTGGGTATGCTCTTCTCCTCAGCACCCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCAGCCGGGAAATGAGGGTGGGTATGCTCTTCTCCTCAGCACCCT  700

seq1  CCCCAAGGCCCAGGCGCCCGTACTCAGCCCGGCCCAGGCTGTACGCCTTC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGCCCAGGCGCCCGTACTCAGCCCGGCCCAGGCTGTACGCCTTC  750

seq1  CCTGTGGGAAGAAGGAGAAAAGACCATCAGCCGGGGGCATGTGCTAAGTA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGAAGAAGGAGAAAAGACCATCAGCCGGGGGCATGTGCTAAGTA  800

seq1  AGATGAATGCACACCACGGGAGGTAAGACTCTACACAACTCCCCTGTGCC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATGCACACCACGGGAGGTAAGACTCTACACAACTCCCCTGTGCC  850

seq1  TTCATACTCGGAAGCACCACGACAACCCTCATGGATGCAAATCTATGTCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCGGAAGCACCACGACAACCCTCATGGATGCAAATCTATGTCT  900

seq1  GGCCCAAACCACAATCCTAGTGATGCGGCTCTTAGGGACTACTGTCCCTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAACCACAATCCTAGTGATGCGGCTCTTAGGGACTACTGTCCCTA  950

seq1  AGATGCAGAAGACATGGGAGTCCTACCTTCCGAATCCATGCAGACTGTGT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGAAGACATGGGAGTCCTACCTTCCGAATCCATGCAGACTGTGT  1000

seq1  GATGCTGGCCACCGGAGAAGCCTACCCAGGACTTGGTGGAATTC  1028
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGCCACCGGAGAAGCCTACCCAGGACTTGGTGGAATTC  1044