BAC Information

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BAC

Clone NameB6Ng01-275H19
Chromosome4 (Build37)
Map Location 85,660,631 - 85,661,809
singlet/doubletsinglet
Overlap geneLOC668052
Upstream geneD530005L17Rik, LOC100040303, Sh3gl2, A930009N24
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275H19.bB6Ng01-275H19.g
ACCGA076513GA076514
length1,1681,214
definitionB6Ng01-275H19.b B6Ng01-275H19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaataattttttgctactcacatgattgttattaaaaggaacca
atgtgaggtgtggaaagatggactgtatccacctgagcattaggaatcat
cataatgttatctgctgattcagtctactatcacacgagtaaaatggcaa
ggattagtttaatagaacctgtctgtatcaaagtcacagccggtgctggt
aagaacctcagttctctgtatctttccaaaagacactccaaactaatatg
tctctccctcgggctagccattattttatccttaagtctaattttaaggc
atttcttcattgagcccacttctttcattcctttaagaagaaaagggaac
ccagatggcgtggctgacagttactatgtatatggaattccttaagcagt
gtggaggagagtgccttatttcgcaatgctgatggagcccaccctttgca
ggcttttcagtatctttgttctccgacgtgttgaaatgaacgctaatcgc
tttagttatggagtagggtatctccagatagcagcagatgtccctcactc
ccttctttccaatttgggctgtgcttttgaaactttatgataaaaaaaaa
aattaaaacttaagggagagtaggattttctctaaacatgccacatcccc
cactagacagcaatgtcataatgaaaatgatggtggagctctatatgaag
ttggcgcatggaccatgttaaatatgtaaagtaacctagttagacttttt
aaactgactaacttcccccttatttttatttatttatttatttatttatt
tatttattttaagatagggctggcaacagtcaggaaagtagagaaggagc
tgccaatcagcttccaccattctgatcacaatgaaaagcacacagtgaaa
aacaactccatttgtttcaggcctcaaaccttatgatcattcgtgatcaa
gaattgattatcatacatattcttctaataatcagtgctaactgtgcatg
tgtttattttcactaaaagacaaatcccttcatgagtagaatataagaga
gctgttcagcttccctcgggtgaaagattggacctttgttgactcggtat
tatacattattggcgtttctaagatacatgattgatactgcaatgactac
aagccatgtttgaactct
gaattcattaaattagaaacatcttctttgacaagtaatgtagtatccaa
cgccaggttccatggcctagggctttagcatctttggaagcatattcgca
tggagtatggctgtcaggctgtgttagttgattctaaaaatgtagacagt
cctctagagtgtctacagtttagtgcacactacaattccagtcagaagac
ttttctctttttttgtctggattattttgtcattccctgtaattttcttt
ggaaatgcctattagaagtacgttggaacttacttgcttttaaaatatct
cttaaagtgtgtttttaaaaataaaatttctgtactatttattacatttt
tgcgtaaagtttttaattttcacaatcaattttcatctttatttaagatg
ttgaatttatcctatctatggagattttaattctgattgctatattcttc
tattgtaaatttctaatactttcatttcctgatctgtcttacttcatttt
tacctttcttgcaatttttttcttagttgttagtcaattgctctatttgt
gatagtaaaaatctcacatagctgccattaacactgaattagcaaatacc
aaattcattgctcctaggagaatttagtctttcagcctatgatcatgaca
ttttaagtcaatttatcaaaaggaaatcttgtttgatttatatttcaatt
tgaggacaccatatttactagatattgttggcttattaacattgaacttc
tacataacggcactacagtccatgactcaaggaatctcatctaacagctg
tgccctctagaaaggtacactgtaaccttcctgagcttagaaacaacaga
caacacttcattgttatgcttgtgggccattttaaacagcaaaaccactc
agacagaaacacagaaataaatggggaaaatgtgccactaagtagataac
acaaaaaaaaaacccatactttaatagtgtgagagctgactcagtagaca
atgtcaccttgttcgacccagctgggaacacaagctcagaatattttttt
tcttctgcccttcccttgtcttgtgagtgaccacaaagcacacccacaaa
tacttacgtgggggatggcaaccatttagcagtagcaattacgtgacctg
catgcctggaatattacattgaggtcttgtatcacaccagtttctcacac
atccgacgtggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85660631_85661809
seq2: B6Ng01-275H19.b_44_1211

seq1  GAATTCCAATAATTTTTTGCTACTCACATGATTGTTATTAAAAGGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAATTTTTTGCTACTCACATGATTGTTATTAAAAGGAACCA  50

seq1  ATGTGAGGTGTGGAAAGATGGACTGTATCCACCTGAGCATTAGGAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGTGTGGAAAGATGGACTGTATCCACCTGAGCATTAGGAATCAT  100

seq1  CATAATGTTATCTGCTGATTCAGTCTACTATCACACGAGTAAAATGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTTATCTGCTGATTCAGTCTACTATCACACGAGTAAAATGGCAA  150

seq1  GGATTAGTTTAATAGAACCTGTCTGTATCAAAGTCACAGCCGGTGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGTTTAATAGAACCTGTCTGTATCAAAGTCACAGCCGGTGCTGGT  200

seq1  AAGAACCTCAGTTCTCTGTATCTTTCCAAAAGACACTCCAAACTAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTCAGTTCTCTGTATCTTTCCAAAAGACACTCCAAACTAATATG  250

seq1  TCTCTCCCTCGGGCTAGCCATTATTTTATCCTTAAGTCTAATTTTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCGGGCTAGCCATTATTTTATCCTTAAGTCTAATTTTAAGGC  300

seq1  ATTTCTTCATTGAGCCCACTTCTTTCATTCCTTTAAGAAGAAAAGGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCATTGAGCCCACTTCTTTCATTCCTTTAAGAAGAAAAGGGAAC  350

seq1  CCAGATGGCGTGGCTGACAGTTACTATGTATATGGAATTCCTTAAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGCGTGGCTGACAGTTACTATGTATATGGAATTCCTTAAGCAGT  400

seq1  GTGGAGGAGAGTGCCTTATTTCGCAATGCTGATGGAGCCCACCCTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGAGAGTGCCTTATTTCGCAATGCTGATGGAGCCCACCCTTTGCA  450

seq1  GGCTTTTCAGTATCTTTGTTCTCCGACGTGTTGAAATGAACGCTAATCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCAGTATCTTTGTTCTCCGACGTGTTGAAATGAACGCTAATCGC  500

seq1  TTTAGTTATGGAGTAGGGTATCTCCAGATAGCAGCAGATGTCCCTCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATGGAGTAGGGTATCTCCAGATAGCAGCAGATGTCCCTCACTC  550

seq1  CCTTCTTTCCAATTTGGGCTGTGCTTTTGAAACTTTATGATAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCCAATTTGGGCTGTGCTTTTGAAACTTTATGATAAAAAAAAA  600

seq1  AATTAAAACTTAAGGGAGAGTAGGATTTTCTCTAAACATGCCACATCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACTTAAGGGAGAGTAGGATTTTCTCTAAACATGCCACATCCCC  650

seq1  CACTAGACAGCAATGTCATAATGAAAATGATGGTGGAGCTCTATATGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACAGCAATGTCATAATGAAAATGATGGTGGAGCTCTATATGAAG  700

seq1  TTGGCGCATGGACCATGTTAAATATGTAAAGTAACCTAGTTAGACTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGCATGGACCATGTTAAATATGTAAAGTAACCTAGTTAGACTTTTT  750

seq1  AAACTGACTAACTTCCCCCTTATTTTTATTTATTTATTTATTTATTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTAACTTCCCCCTTATTTTTATTTATTTATTTATTTATTTATT  800

seq1  TATTTATTTTAAGATAGGGCTGGCAACAGTCAGGAAAGTAGAGAAGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTAAGATAGGGCTGGCAACAGTCAGGAAAGTAGAGAAGGAGC  850

seq1  TGCCAATCAGCTTCCACCATTCTGATCACAATGAAAAGCACACAGTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATCAGCTTCCACCATTCTGATCACAATGAAAAGCACACAGTGAAA  900

seq1  AACAACTCCATTTGTTTCAGGCCTCAAACCTTATGATCATTCGGTGATCA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACAACTCCATTTGTTTCAGGCCTCAAACCTTATGATCATTC-GTGATCA  949

seq1  AGAATTGATTATCAATACATATTC-TCTAATAATCAAGTGCTAACTGTGC  999
      ||||||||||||| |||||||||| |||||||||| ||||||||||||||
seq2  AGAATTGATTATC-ATACATATTCTTCTAATAATC-AGTGCTAACTGTGC  997

seq1  ATGTGTTTATTTCCACTAAAAAGGACAAATCCCTTCATGAAGTAGAATAT  1049
      |||||||||||| ||||||||  |||||||||||||||| ||||||||||
seq2  ATGTGTTTATTTTCACTAAAA--GACAAATCCCTTCATG-AGTAGAATAT  1044

seq1  AAGAGAGCTGTTCCAGCTTCCCTCGGGTGAAAGATTGGA-CTTTGTGAAC  1098
      |||||||||||| |||||||||||||||||||||||||| ||||||  ||
seq2  AAGAGAGCTGTT-CAGCTTCCCTCGGGTGAAAGATTGGACCTTTGTTGAC  1093

seq1  TC-GTA-TATACATTATTGGCCTTTCCTAAGGAATACAATGGATTGATTA  1146
      || ||| |||||||||||||| ||| |||||  |||||   |||||| ||
seq2  TCGGTATTATACATTATTGGCGTTT-CTAAG--ATACA--TGATTGA-TA  1137

seq1  CTTGCAATGACTACAAAAGCAGTG-TTGAACTCT  1179
      | ||||||||||||  ||||  || |||||||||
seq2  C-TGCAATGACTAC--AAGCCATGTTTGAACTCT  1168