BAC Information

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BAC

Clone NameB6Ng01-276C13
Chromosome4 (Build37)3 (Build37)
Map Location 65,173,281 - 65,173,81669,547,335 - 69,548,426
singlet/doubletsingletsinglet
Overlap geneAstn2
Upstream genePappa
Downstream geneTrim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276C13.bB6Ng01-276C13.g
ACCGA077008GA077009
length9901,095
definitionB6Ng01-276C13.b B6Ng01-276C13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,173,281 - 65,173,816)(69,547,335 - 69,548,426)
sequence
gaattctcttgatgccttgggtttttgttttttgttttttgttttttgtt
ttttgttttttgttttcttacttttactctatgtttgctattttcatccc
aaacagtaacattgacctgaaagtttactttgacaggaattaaaataata
attttacaccaaatgcaaattcttcacagaaaaatgtcatgacaatagaa
tggctatgaattttcatggttccccgggagctggggaagctgattcagcg
aacaccagtgacagttcacgagatggaactatgagataatcaggctgggt
tcttccctgtctcacacggacactaattaaagcagaagtctcactccaac
ccattcaagacagaaaaactagttagaggagctgctgctaagtccaagtc
ttcaaagaagctgtcagcctatgtgcagagcacagggaagcctatgtgca
gagcacggggaagcctatgtgcagagcacggggaagtgtgcttgtttggg
aagggacctgtttacatccctaaagcaaaaacggttggatttttccccca
aaacaattttttgttagatattttcttcatttacatttcaaatgctatcc
cgaaagttccctataccctccccccgccctgctccccaacccacccactc
ccatttactgaccctggcattcccctgtactggggcatagaatctttgaa
agaccaaggacttcttgtcccattgatggctgactagaccatcttctgtt
acatatgcagctagagacacgagctctgggggtactggttagttcatata
gttgttcctcctatagggttgcagatcccttcagctccttgggtgctttc
tctagctcctccattggggaccctgggttccatccaatagatgactgtaa
gcatccacttctgaatttgccaggcactgtcagagcttcacaggagacag
ctatatcagggtcctgtaagcaaaatcttgctggcatatg

gaattctggaaagttgaaagctgttttaaatgaatattaaatgagaaaaa
gtcaatattatatttaatttttccatgatatgatttctttcttttctgtt
aagcacacccttggggaagtctggatccagaagacatctgaaatgaatac
agataaacagtatttttgccgaactcacttgggacatcttttaaatcctg
gagacctggtgctggggtttgttttattttgttgtattttaacttggcag
atagcattgtaggttttcttcaggagccaatgaatatttaaaatactaaa
tttgttaatttcaaaaaatttaagagtgcttaagatcctttcagtttttt
ttttaaagatttatttattttatgtatatgagtacattgtagtatatgag
tacagatggttgtgagccatcatgtggttgctgggaattgaatttcagga
cttactgcttgatccatgcttgatccagtcctgttctctccagccttgct
tgttccggtccaaagatttacttattatatgtaagtacactgtagctgtt
ttcagacacaccagaagagggcgtcagatatcattatgcatggttgtgag
ccaccatgtggcctctggaatttgaactcaggaccttcagaagagcaatg
ttttacccactgagccatctgtctagccctcagcttatttttattattga
taactataaactcatagattgcatagaagcccatagttgttccatttggg
ccatcatctgagagtcatttattcaaagatttttggcaattaaacaatat
agttagataaatagttacagcttttgaagagagtgcgtagcttttatggc
tgtgaaaatacttcactctttggaaacagctagggctgaagagatggctc
agaggttaagagtctactgttcttgcagaggacccagattttgatctcag
tcctcatatcaggcaggtcacaaccctcaatagctccaggttctaaggga
tctacacttctgacttctagggtacttacacacacacacacacagacaac
cacacacacacacaggtattatataatcgcatgccaggcacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65173281_65173816
seq2: B6Ng01-276C13.b_594_954 (reverse)

seq1  GAAGTGGATGCTCACAGTCATCTATAAGATGGAACACAGGGCCCCCAATG  50
      |||||||||||| ||||||||||||  |||||||| ||||| ||||||||
seq2  GAAGTGGATGCTTACAGTCATCTATTGGATGGAACCCAGGGTCCCCAATG  50

seq1  GAGAGGCTGGTGAGAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCAATA  100
      |||  ||| | || ||||||||||||||||||||| |||||||||| |||
seq2  GAGGAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATA  100

seq1  GGTGGAACAACAATATGAACTAATCAGTACCCCCAGAGATGGTGTCTCTA  150
      || |||||||| ||||||||||| |||||||||||||| | |||||||||
seq2  GGAGGAACAACTATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTCTA  150

seq1  GCTGCATATGTAGCAGAAGATGGCCTAGTCGGCTATCACTGGGAAGAGAG  200
      |||||||||||| |||||||||| |||||| || |||| |||||  ||| 
seq2  GCTGCATATGTAACAGAAGATGGTCTAGTCAGCCATCAATGGGACAAGAA  200

seq1  GCCCCTTGGTATTGCAAACTTTATATGCCTCAGTACAGGGGAATGCCAGG  250
      |  ||||||| || ||||  || |||||| ||||||||||||||||||||
seq2  G-TCCTTGGTCTTTCAAAGATTCTATGCCCCAGTACAGGGGAATGCCAGG  249

seq1  GCCAAGAAGTGGGAGTGGGTGGGTAGAGGAGCAGGGTGGGGGGAGGGTAT  300
      | ||  || ||||||||||||||| | ||||||||| |||||||||||||
seq2  GTCAGTAAATGGGAGTGGGTGGGTTGGGGAGCAGGGCGGGGGGAGGGTAT  299

seq1  AGGGAACTTTTGGGATAGCATTTGAAATGTATATAAAGAAAATATCTAAG  350
      |||||||||| |||||||||||||||||||| || |||||||||||||| 
seq2  AGGGAACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAAC  349

seq1  AAAGAA-AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGG  399
      ||| ||  |                                         
seq2  AAAAAATTGTTT--------------------------------------  361

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAG  449
                                                        
seq2  --------------------------------------------------  361

seq1  CCAGTTACACCAGAAAAGTCTCTTTTTCTCATAGAAATAGCCTCAATTTC  499
                                                        
seq2  --------------------------------------------------  361

seq1  TATGTAAATGAAGAAAATATCTAATAAAAATTTGTTT  536
                                           
seq2  -------------------------------------  361


seq1: chr3_69547335_69548426
seq2: B6Ng01-276C13.g_69_1163

seq1  GAATTCTGGAAAGTTGAAAGCTGTTTTAAATGAATATTAAATGAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAAGTTGAAAGCTGTTTTAAATGAATATTAAATGAGAAAAA  50

seq1  GTCAATATTATATTTAATTTTTCCATGATATGATTTCTTTCTTTTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATATTATATTTAATTTTTCCATGATATGATTTCTTTCTTTTCTGTT  100

seq1  AAGCACACCCTTGGGGAAGTCTGGATCCAGAAGACATCTGAAATGAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACCCTTGGGGAAGTCTGGATCCAGAAGACATCTGAAATGAATAC  150

seq1  AGATAAACAGTATTTTTGCCGAACTCACTTGGGACATCTTTTAAATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACAGTATTTTTGCCGAACTCACTTGGGACATCTTTTAAATCCTG  200

seq1  GAGACCTGGTGCTGGGGTTTGTTTTATTTTGTTGTATTTTAACTTGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGGTGCTGGGGTTTGTTTTATTTTGTTGTATTTTAACTTGGCAG  250

seq1  ATAGCATTGTAGGTTTTCTTCAGGAGCCAATGAATATTTAAAATACTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTGTAGGTTTTCTTCAGGAGCCAATGAATATTTAAAATACTAAA  300

seq1  TTTGTTAATTTCAAAAAATTTAAGAGTGCTTAAGATCCTTTCAGTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAATTTCAAAAAATTTAAGAGTGCTTAAGATCCTTTCAGTTTTTT  350

seq1  TTTTAAAGATTTATTTATTTTATGTATATGAGTACATTGTAGTATATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGATTTATTTATTTTATGTATATGAGTACATTGTAGTATATGAG  400

seq1  TACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTTCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTTCAGGA  450

seq1  CTTACTGCTTGATCCATGCTTGATCCAGTCCTGTTCTCTCCAGCCTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCTTGATCCATGCTTGATCCAGTCCTGTTCTCTCCAGCCTTGCT  500

seq1  TGTTCCGGTCCAAAGATTTACTTATTATATGTAAGTACACTGTAGCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGGTCCAAAGATTTACTTATTATATGTAAGTACACTGTAGCTGTT  550

seq1  TTCAGACACACCAGAAGAGGGCGTCAGATATCATTATGCATGGTTGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACACCAGAAGAGGGCGTCAGATATCATTATGCATGGTTGTGAG  600

seq1  CCACCATGTGGCCTCTGGAATTTGAACTCAGGACCTTCAGAAGAGCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGGCCTCTGGAATTTGAACTCAGGACCTTCAGAAGAGCAATG  650

seq1  TTTTACCCACTGAGCCATCTGTCTAGCCCTCAGCTTATTTTTATTATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCACTGAGCCATCTGTCTAGCCCTCAGCTTATTTTTATTATTGA  700

seq1  TAACTATAAACTCATAGATTGCATAGAAGCCCATAGTTGTTCCATTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATAAACTCATAGATTGCATAGAAGCCCATAGTTGTTCCATTTGGG  750

seq1  CCATCATCTGAGAGTCATTTATTCAAAGATTTTTGGCAATTAAACAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCTGAGAGTCATTTATTCAAAGATTTTTGGCAATTAAACAATAT  800

seq1  AGTTAGATAAATAGTTACAGCTTTTGAAGAGAGTGCGTAGCTTTTATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATAAATAGTTACAGCTTTTGAAGAGAGTGCGTAGCTTTTATGGC  850

seq1  TGTGAAAATACTTCACTCTTTGGAAACAGCTAGGGCTGAAGAGATGGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATACTTCACTCTTTGGAAACAGCTAGGGCTGAAGAGATGGCTC  900

seq1  AGAGGTTAAGAGTCTACTGTTCTTGCAGAGGACCCAGATTTTGATCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTAAGAGTCTACTGTTCTTGCAGAGGACCCAGATTTTGATCTCAG  950

seq1  TCCTCATATCAGGCAGGTCACAACCCTCAATAGCTCCA-GTTCTAAGGGA  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCTCATATCAGGCAGGTCACAACCCTCAATAGCTCCAGGTTCTAAGGGA  1000

seq1  TCTAACACTTCTGACTTCTA-GGTACTTACACACACACACACACACACAC  1048
      ||| |||||||||||||||| |||||||||||||||||||||||| ||| 
seq2  TCT-ACACTTCTGACTTCTAGGGTACTTACACACACACACACACAGACAA  1049

seq1  ACACACACACACACAAGTA-TATATAAACGCATG-CAGGCACACAC  1092
       |||||||||||||| ||| ||||||| |||||| |||||||||||
seq2  CCACACACACACACAGGTATTATATAATCGCATGCCAGGCACACAC  1095


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