BAC Information

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BAC

Clone NameB6Ng01-277P17
Chromosome4 (Build37)
Map Location 74,770,214 - 74,882,103
singlet/doubletdoublet
Overlap geneLOC636847
Upstream geneFrmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
Downstream gene3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277P17.bB6Ng01-277P17.g
ACCGA078351GA078352
length1,0311,095
definitionB6Ng01-277P17.b B6Ng01-277P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,770,214 - 74,771,254)(74,881,000 - 74,882,103)
sequence
gaattcaccccaaagaactatttctaaataggtccacatccttatttgct
ctattaacctttcctttccactacttctggtgtgtaatgggctagaaggg
aggttaaaacatttaaggtcacttaataaagtaggttttgaaaaatataa
acctacagatgtgagtgtccatctctgttacatggaggtacagtgaggtt
ccagcccaagttgcccctgggtctatgctgggttcgtggcaatgcagcat
cagtctaaattagaggaggaacatgaagatggaggagaggagatgctgtg
gcaactgcaatatagtatatgtgtaaagaccatataaaatctgtaactca
taaaccaataaaaacaaaatatagttaaaaaaagaaaagggaaaagtttg
agcaatttttatggccatttgtaataaaatatctcagcaaactcaaaatc
aatggaatgtactgagtctgatttatgacagatagagtctatttcagaca
tgatattcaatggtaaaagccgtcatgcttcctaaaaaaaaaaggacatg
agtataactttttaacatattattggaggttctagtcagagacatgaagc
aagtaaaagaaaagaaaagttgtcatatggaaagaaagagatgaattttc
ccttttgatcatgaatgtgggaaacatctacacagaactcacaaaatagg
tatgagaataaaaaccaactgaaagttttcagaatagaagatcaattaac
aaacatcaactcaaaattagttaaataatgtctattcacaataacattaa
aatcgttaggaataaactaaaatgacctataaaaggtaaatcgtgaaagt
tgaaatacattggaaagggaaatgcgagaagtcattgaaatacatgtacc
tcaatgttcctcacattttcttaaagttaaactagatagttgaattatcc
catgagtctttatttattatttttatgtttcctgtcatttattttatatt
tttatgatattttaatttacgtttcaaatgt

gaattctccctttcttccttttctttttcttctgcttcatggagagttta
tgagctccaagcctctcatctggccagtgagaggttcttcagacagagaa
aagtaaaagcagtgtttatcagcacaaactactaagagaaagaaataaag
tttattagcatgtaataataggaagagagagttacagagatagaccagag
agtaagagagagttacagaaaagaagaaaccagaaagttacagagaaaag
caatcagagcttatttgcacagaacagtaagagagagttaaatttctaga
agccataaacttctgacccccaaaatagtatgaaagaggtataaggtcat
agataaatagtggttggctttcgtccaactctgtgtcccacccagttact
gttgccaccacaaagctcaggacaggccactggcttctattattaaatcc
acttatcttttgacttatcttattggtgattatttttctatcaattatgg
gtgttattggttttgcaaaatattattttccaaactaattttaatttata
ttaaaataaaaatactaacattgatttgagcaaagataacatattataaa
attgttttatgttccttacagtaacatttttttaatctccagtattttta
taatatatcttaaatttcattaggttgaccctactttgcttaataagctt
tgtgtcttgacttgagtgaaccttctagaattcttgtattgaacttaatc
cagagactcttttgtcaacagaatttggatacacccttttggaaatactt
accattcacgaaattaggacactgccgcagaacctctgggcccctttgtc
tttgtggaacgggtctctgggtgcagatgggcaaggagttggtgggaatg
atgacagaagcatgcaggaggttgtatagaatctgaatgtaattgtcagt
cgagcatcaaacttatttaatacagagaatagcagaaaccagacgagatt
acatccactaagtgacacaatacaaaagaaaatatacatcaaaaggagca
gaacaagcagctgccacttagaagaagccaggtgtaaggctagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_74770214_74771254
seq2: B6Ng01-277P17.b_48_1078

seq1  GAATTCACCCCAAAGAACTATTTCTAAATAGGTCCACATCCTTATTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCAAAGAACTATTTCTAAATAGGTCCACATCCTTATTTGCT  50

seq1  CTATTAACCTTTCCTTTCCACTACTTCTGGTGTGTAATGGGCTAGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACCTTTCCTTTCCACTACTTCTGGTGTGTAATGGGCTAGAAGGG  100

seq1  AGGTTAAAACATTTAAGGTCACTTAATAAAGTAGGTTTTGAAAAATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAACATTTAAGGTCACTTAATAAAGTAGGTTTTGAAAAATATAA  150

seq1  ACCTACAGATGTGAGTGTCCATCTCTGTTACATGGAGGTACAGTGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGATGTGAGTGTCCATCTCTGTTACATGGAGGTACAGTGAGGTT  200

seq1  CCAGCCCAAGTTGCCCCTGGGTCTATGCTGGGTTCGTGGCAATGCAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAAGTTGCCCCTGGGTCTATGCTGGGTTCGTGGCAATGCAGCAT  250

seq1  CAGTCTAAATTAGAGGAGGAACATGAAGATGGAGGAGAGGAGATGCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAAATTAGAGGAGGAACATGAAGATGGAGGAGAGGAGATGCTGTG  300

seq1  GCAACTGCAATATAGTATATGTGTAAAGACCATATAAAATCTGTAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCAATATAGTATATGTGTAAAGACCATATAAAATCTGTAACTCA  350

seq1  TAAACCAATAAAAACAAAATATAGTTAAAAAAAGAAAAGGGAAAAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAATAAAAACAAAATATAGTTAAAAAAAGAAAAGGGAAAAGTTTG  400

seq1  AGCAATTTTTATGGCCATTTGTAATAAAATATCTCAGCAAACTCAAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTTATGGCCATTTGTAATAAAATATCTCAGCAAACTCAAAATC  450

seq1  AATGGAATGTACTGAGTCTGATTTATGACAGATAGAGTCTATTTCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATGTACTGAGTCTGATTTATGACAGATAGAGTCTATTTCAGACA  500

seq1  TGATATTCAATGGTAAAAGCCGTCATGCTTCCTAAAAAAAAAAGGACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCAATGGTAAAAGCCGTCATGCTTCCTAAAAAAAAAAGGACATG  550

seq1  AGTATAACTTTTTAACATATTATTGGAGGTTCTAGTCAGAGACATGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAACTTTTTAACATATTATTGGAGGTTCTAGTCAGAGACATGAAGC  600

seq1  AAGTAAAAGAAAAGAAAAGTTGTCATATGGAAAGAAAGAGATGAATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAGAAAAGAAAAGTTGTCATATGGAAAGAAAGAGATGAATTTTC  650

seq1  CCTTTTGATCATGAATGTGGGAAACATCTACACAGAACTCACAAAATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGATCATGAATGTGGGAAACATCTACACAGAACTCACAAAATAGG  700

seq1  TATGAGAATAAAAACCAACTGAAAGTTTTCAGAATAGAAGATCAATTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAATAAAAACCAACTGAAAGTTTTCAGAATAGAAGATCAATTAAC  750

seq1  AAACATCAACTCAAAATTAGTTAAATAATGTCTATTCACAATAACATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAACTCAAAATTAGTTAAATAATGTCTATTCACAATAACATTAA  800

seq1  AATCGTTAGGAATAAACTAAAATGACCTATAAAAGGTAAATCGTGAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTTAGGAATAAACTAAAATGACCTATAAAAGGTAAATCGTGAAAGT  850

seq1  TGAAATACATTGGAAAGGGAAATGCGAGAAGTCATTGAAATACATGTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACATTGGAAAGGGAAATGCGAGAAGTCATTGAAATACATGTACC  900

seq1  TCAATGTTCCTCACATTTTCTTAAAGTTAAACTAGATAGTTGAATTATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTCCTCACATTTTCTTAAAGTTAAACTAGATAGTTGAATTATCC  950

seq1  CATGAGTCTTTTATTTATTTATTTTTTATGTTTCCTGTCATTTTATTTTT  1000
      |||||||| ||||||||||   |||||||||||||||||||||   ||||
seq2  CATGAGTC-TTTATTTATT--ATTTTTATGTTTCCTGTCATTT--ATTTT  995

seq1  ATATTTTTATTGGTTAATTTTTAAATTTACGTTTCAAATGT  1041
      |||||||||     | || ||| ||||||||||||||||||
seq2  ATATTTTTA-----TGATATTTTAATTTACGTTTCAAATGT  1031


seq1: chr4_74881000_74882103
seq2: B6Ng01-277P17.g_68_1162 (reverse)

seq1  GACTAGCTTTACACCTGGCTCCCTTCTTAGTGGCAGCTGCCTGGTCCCTG  50
      ||||||| ||||||||||||  ||||| |||||||||||| || |  |||
seq2  GACTAGCCTTACACCTGGCT-TCTTCTAAGTGGCAGCTGCTTGTT--CTG  47

seq1  CCTTCTTTTGATGTATATTTTCCTTTTGTATTGTGTCACTTAGTGGATTG  100
       || ||||||||||||||||| ||||||||||||||||||||||||||  
seq2  -CTCCTTTTGATGTATATTTT-CTTTTGTATTGTGTCACTTAGTGGATGT  95

seq1  TATCTCGTCTGGTTTCTTGCTATTCTTCTGTATTAAATAAGTTTGATGCT  150
       ||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  AATCTCGTCTGGTTTC-TGCTATTC-TCTGTATTAAATAAGTTTGATGCT  143

seq1  CGACTTGACAAATTACATTCAGATTCTATACAACCTCCTGCATGCTTCTG  200
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGAC-TGAC-AATTACATTCAGATTCTATACAACCTCCTGCATGCTTCTG  191

seq1  TCATCATTCCCACCAACTCCTTGCCCATCTGCACCCAGAGACCCGTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTCCCACCAACTCCTTGCCCATCTGCACCCAGAGACCCGTTCCA  241

seq1  CAAAGACAAAGGGGCCCAGAGGTTCTGCGGCAGTGTCCTAATTTCGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAAAGGGGCCCAGAGGTTCTGCGGCAGTGTCCTAATTTCGTGAA  291

seq1  TGGTAAGTATTTCCAAAAGGGTGTATCCAAATTCTGTTGACAAAAGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTATTTCCAAAAGGGTGTATCCAAATTCTGTTGACAAAAGAGTC  341

seq1  TCTGGATTAAGTTCAATACAAGAATTCTAGAAGGTTCACTCAAGTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTAAGTTCAATACAAGAATTCTAGAAGGTTCACTCAAGTCAAGA  391

seq1  CACAAAGCTTATTAAGCAAAGTAGGGTCAACCTAATGAAATTTAAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCTTATTAAGCAAAGTAGGGTCAACCTAATGAAATTTAAGATAT  441

seq1  ATTATAAAAATACTGGAGATTAAAAAAATGTTACTGTAAGGAACATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAATACTGGAGATTAAAAAAATGTTACTGTAAGGAACATAAAA  491

seq1  CAATTTTATAATATGTTATCTTTGCTCAAATCAATGTTAGTATTTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATAATATGTTATCTTTGCTCAAATCAATGTTAGTATTTTTATT  541

seq1  TTAATATAAATTAAAATTAGTTTGGAAAATAATATTTTGCAAAACCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATAAATTAAAATTAGTTTGGAAAATAATATTTTGCAAAACCAATA  591

seq1  ACACCCATAATTGATAGAAAAATAATCACCAATAAGATAAGTCAAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATAATTGATAGAAAAATAATCACCAATAAGATAAGTCAAAAGAT  641

seq1  AAGTGGATTTAATAATAGAAGCCAGTGGCCTGTCCTGAGCTTTGTGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATTTAATAATAGAAGCCAGTGGCCTGTCCTGAGCTTTGTGGTGG  691

seq1  CAACAGTAACTGGGTGGGACACAGAGTTGGACGAAAGCCAACCACTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAACTGGGTGGGACACAGAGTTGGACGAAAGCCAACCACTATTT  741

seq1  ATCTATGACCTTATACCTCTTTCATACTATTTTGGGGGTCAGAAGTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGACCTTATACCTCTTTCATACTATTTTGGGGGTCAGAAGTTTAT  791

seq1  GGCTTCTAGAAATTTAACTCTCTCTTACTGTTCTGTGCAAATAAGCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTAGAAATTTAACTCTCTCTTACTGTTCTGTGCAAATAAGCTCTG  841

seq1  ATTGCTTTTCTCTGTAACTTTCTGGTTTCTTCTTTTCTGTAACTCTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTCTCTGTAACTTTCTGGTTTCTTCTTTTCTGTAACTCTCTCT  891

seq1  TACTCTCTGGTCTATCTCTGTAACTCTCTCTTCCTATTATTACATGCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTGGTCTATCTCTGTAACTCTCTCTTCCTATTATTACATGCTAA  941

seq1  TAAACTTTATTTCTTTCTCTTAGTAGTTTGTGCTGATAAACACTGCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATTTCTTTCTCTTAGTAGTTTGTGCTGATAAACACTGCTTTT  991

seq1  ACTTTTCTCTGTCTGAAGAACCTCTCACTGGCCAGATGAGAGGCTTGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCTGTCTGAAGAACCTCTCACTGGCCAGATGAGAGGCTTGGAG  1041

seq1  CTCATAAACTCTCCATGAAGCAGAAGAAAAAGAAAAGGAAGAAAGGGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAACTCTCCATGAAGCAGAAGAAAAAGAAAAGGAAGAAAGGGAGA  1091

seq1  ATTC  1104
      ||||
seq2  ATTC  1095


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