BAC Information

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BAC

Clone NameB6Ng01-278G08
Chromosome4 (Build37)
Map Location 36,696,206 - 36,697,363
singlet/doubletsinglet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278G08.bB6Ng01-278G08.g
ACCGA078652GA078653
length1,1421,105
definitionB6Ng01-278G08.b B6Ng01-278G08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagcacactttcctaaggaaccccatttagttgggaggctgtg
atttatatatgtttagtgcatcggggctttgtttttacacattctaataa
attaatttctctatcactaaggcactaattcctcaacaatttttataaat
aaaaagatacccaatattaatgcatcattctttatatcaattataccttc
tatctgaggatatataaagcattcaattttctgcatttggaatattcact
ctctctttgtacagttcagagacttctttaggaaaaataaattttcctta
gcaaaactttcaagaaaggaacatacattgtaattactattatttcctat
tcccacaaaatttctacagtggctacagcaatctcattctacttaaattt
gagtgttctaacacatgttcaatccttctctaccccttggctcagccaca
gggttgagtttgtgcaggctgcatgattattggggacttctgaaattttc
ttaaaattttagggtgcttaagcaaagactgagaaagacttcccacagtg
acaataacttctcttcaaatatctgagggttctatgttctgtgttcttta
agagactaattctgaagtgtcttttctagtaatattttcattatttaatt
ttgtagccttccattcacatccctcttttgtaatacatgaaaagctttca
attataatgcaaaataacaatgactagaatcagtaagcacagacatttaa
ttggaccatagagagtttgaaaggctacaaattactattgtgtcatttga
atctttctaggttgggaaaaagaaaggaatgataatttttgaacctttaa
ataaaaaacgtgaactaaaatttcaaaagcacatataaagaaaaatgaaa
ataaatatgttattatcctttgaaggctggattcatggaaagatattgtg
tgacttggttttgtcgtgaatacttaagtttctccctctatggtaattga
gagtttgccgggtatattagcctggctgcatttgtgttctcttagtgtct
gtataacatctgtcagactcttctgccttcatagtctctggtgaaagtct
gtgtattctgatagcctcctttaatgttactggactttctcc

gaattctgttattgcatatttctcagggaaacttgtaatcaacaatgatt
taaaaataattcttataattaaattagaaagtagacatattttaaatctt
tagtagttgtaacatacatacaaataatgcatgcctaagcagataagaaa
acattatgtatctcttgatattatagaggttagcaacttctatagaaata
tatcctgagtttttgatcttagaagatgctccaacatgtaataagaatac
atgctccagtatgttcatagcagccttatttataatagccagaagctgga
aagaacccggatgtctgtcaaaaggggaatggatacagaaaatgtggtac
aattacacaatggagtactactcagctattaaaagaaaaggaattaatga
aattcctaagcaaatggatggaatataaaaatatcatcctaagtgaggta
acccatttgcaaaagaacacacatgatattcactcactaataagtggata
ttagcccagaaactcggaatacccaggataaaatttgcaaaatatatgaa
actcaagaaggaagaccaaagtgtggatacttccgtccttcttagaaggg
ggaacaaaataaccataaaaggagttacagagacaaaatgtgaagcagac
actgaacaaatggccatccagagactgcccacttgaggatccatcccata
aacaaccaccaaacccagaaactattgtagatgccaacaagaggtttctg
acacgagcctgatataactgtctcctgagaggaactgctgccagtgcctg
gcaaatacagaagtggatgctgaaaggtcatccattggacagagaaaata
tccaaggagctgaaggggtttgcagccccataggagaaacaaaatatgaa
ctaaccagtatctccagagctccctggaactaaaccaccaaacaaagaaa
acacatggtgggactcatggctctagctgttatcttgtagcagaggatgg
cctagtcagtcatcatgggaggaggaggccttgttcttggtgatgtccca
ggtattagggggatgccagggccaggaaggtggggaggtgtgggtgggtt
gttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36696206_36697363
seq2: B6Ng01-278G08.b_43_1184

seq1  GAATTCTGAGCACACTTTCCTAAGGAACCCCATTTAGTTGGGAGGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCACACTTTCCTAAGGAACCCCATTTAGTTGGGAGGCTGTG  50

seq1  ATTTATATATGTTTAGTGCATCGGGGCTTTGTTTTTACACATTCTAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATATGTTTAGTGCATCGGGGCTTTGTTTTTACACATTCTAATAA  100

seq1  ATTAATTTCTCTATCACTAAGGCACTAATTCCTCAACAATTTTTATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCTCTATCACTAAGGCACTAATTCCTCAACAATTTTTATAAAT  150

seq1  AAAAAGATACCCAATATTAATGCATCATTCTTTATATCAATTATACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATACCCAATATTAATGCATCATTCTTTATATCAATTATACCTTC  200

seq1  TATCTGAGGATATATAAAGCATTCAATTTTCTGCATTTGGAATATTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGGATATATAAAGCATTCAATTTTCTGCATTTGGAATATTCACT  250

seq1  CTCTCTTTGTACAGTTCAGAGACTTCTTTAGGAAAAATAAATTTTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTGTACAGTTCAGAGACTTCTTTAGGAAAAATAAATTTTCCTTA  300

seq1  GCAAAACTTTCAAGAAAGGAACATACATTGTAATTACTATTATTTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTTTCAAGAAAGGAACATACATTGTAATTACTATTATTTCCTAT  350

seq1  TCCCACAAAATTTCTACAGTGGCTACAGCAATCTCATTCTACTTAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAAATTTCTACAGTGGCTACAGCAATCTCATTCTACTTAAATTT  400

seq1  GAGTGTTCTAACACATGTTCAATCCTTCTCTACCCCTTGGCTCAGCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTCTAACACATGTTCAATCCTTCTCTACCCCTTGGCTCAGCCACA  450

seq1  GGGTTGAGTTTGTGCAGGCTGCATGATTATTGGGGACTTCTGAAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGTTTGTGCAGGCTGCATGATTATTGGGGACTTCTGAAATTTTC  500

seq1  TTAAAATTTTAGGGTGCTTAAGCAAAGACTGAGAAAGACTTCCCACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTAGGGTGCTTAAGCAAAGACTGAGAAAGACTTCCCACAGTG  550

seq1  ACAATAACTTCTCTTCAAATATCTGAGGGTTCTATGTTCTGTGTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACTTCTCTTCAAATATCTGAGGGTTCTATGTTCTGTGTTCTTTA  600

seq1  AGAGACTAATTCTGAAGTGTCTTTTCTAGTAATATTTTCATTATTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTAATTCTGAAGTGTCTTTTCTAGTAATATTTTCATTATTTAATT  650

seq1  TTGTAGCCTTCCATTCACATCCCTCTTTTGTAATACATGAAAAGCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCTTCCATTCACATCCCTCTTTTGTAATACATGAAAAGCTTTCA  700

seq1  ATTATAATGCAAAATAACAATGACTAGAATCAGTAAGCACAGACATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATGCAAAATAACAATGACTAGAATCAGTAAGCACAGACATTTAA  750

seq1  TTGGACCATAGAGAGTTTGAAAGGCTACAAATTACTATTGTGTCATTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCATAGAGAGTTTGAAAGGCTACAAATTACTATTGTGTCATTTGA  800

seq1  ATCTTTCTAGGTTGGGAAAAAGAAAGGAATGATAATTTTTGAACCTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTAGGTTGGGAAAAAGAAAGGAATGATAATTTTTGAACCTTTAA  850

seq1  ATAAAAAACGTGAACTAAAATTTCAAAAGCACATATAAAAGAAAAATGAA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAAAAAACGTGAACTAAAATTTCAAAAGCACATAT-AAAGAAAAATGAA  899

seq1  AATAAATATGTTATTATCCTTTGAAGGGCTGGATTCATGGAAAGATATTG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATAAATATGTTATTATCCTTTGAA-GGCTGGATTCATGGAAAGATATTG  948

seq1  TGTGAACTTGGTTTTGTCGTGGAATACTTAAGTTTCTCCCTCTATGGTAA  1000
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTG-ACTTGGTTTTGTCGT-GAATACTTAAGTTTCTCCCTCTATGGTAA  996

seq1  TTGAGAGTTTGGCCGGGTATATTAGCCTGGGCTGGCATTTGTGTTCTCTT  1050
      |||||||||| ||||||||||||||||| |||| ||||||||||||||||
seq2  TTGAGAGTTT-GCCGGGTATATTAGCCT-GGCT-GCATTTGTGTTCTCTT  1043

seq1  AGTGTCTGTATAACATCTGTCCAGACTCTTCTGGCTTTCATAGTCTCTGG  1100
      |||||||||||||||||||| ||||||||||| || ||||||||||||||
seq2  AGTGTCTGTATAACATCTGT-CAGACTCTTCT-GCCTTCATAGTCTCTGG  1091

seq1  TGAAAAGTCTGGTGTAATTCTGATAGGCCTTCCTTTATATGTTACTTGAC  1150
      || ||||||| |||| ||||||||||  | ||||||| |||||||| || 
seq2  TG-AAAGTCT-GTGT-ATTCTGATAG--CCTCCTTTA-ATGTTACTGGA-  1134

seq1  CTTTCTCC  1158
      ||||||||
seq2  CTTTCTCC  1142


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