BAC Information

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BAC

Clone NameB6Ng01-278O09
Chromosome4 (Build37)
Map Location 146,926,863 - 147,057,906
singlet/doubletdoublet
Overlap geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
Upstream geneLOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneLOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278O09.bB6Ng01-278O09.g
ACCGA079021GA079022
length1,0621,145
definitionB6Ng01-278O09.b B6Ng01-278O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,926,863 - 146,927,921)(147,056,736 - 147,057,906)
sequence
gaattcagagggactgcttaattgtgtgcatttttagactagactcacaa
tgtgagaagttaggcaggatccgttgtatctgaagggttcagaacccagg
tgaagtgtcctactacattcagttctggtctagtctggcagcaacctttt
gagaagctgagtagagtaggtgctgagaagttgtgtttccacaacagagt
tggaggagtggttcctgatggggagggtgggcctcctgcatgattagata
agtttaagaaaaagacaaaataaaacgaagaatcaatcaatcaaaaaatc
aatcaatgaattaagtaagtaagtaagcaagcaagcaagcaagtaagcaa
gcaataatccaaatcaacaaaaattgctctgaagaactgggaagctaatt
aattaagaagtcctgaaggaggtacgcttagaagaatggcaggaagctgc
tgagtattgggcgggtccagaaggagtggctctgaggaaccaggaggaag
tgacaggaagttccgcgattccagccttctccatgtatcttggctgcctc
gtggtcaggaagtcatggagggagactagtgcctagtgtttgcagaacct
gaaaacttccttaagctgcagttgctgtgctggcttcctaggacattcag
cagctggtcctgtcacctgccaggtcagaggagctcttgggttgggaaat
gggtaggatagggcaggcatgtggagcaggggtgcattttctgtcgccac
tcttacaattctgttgtggatatcttaccattatcaggaagtttgagatc
ctgtaaattgagtttatggtgatgttttaattgattttatggttgccagg
aatattttttctaaacaaccctgtagatccttggccctctctggagtttg
tatactgggagggttgtctttgctaaagccttaataaacctcctcgaatt
tcagattcattcatgcttcttactcccctgttccttcaattgccatgttc
catttcccttgcttctgcaaactgagtatgcatctccggaaagagctttg
tagatattgtca
gaattctctctctgaaaggcaaccttaaatccaatcagaatctgttttac
tgtaatttatttttgtctgttgctttcataaagcaccatgttcaaggaaa
ttaatagaagaaaaagactactttgggtaatgcttccagaggatagccat
caaccatgacagggaggactgatagaacatagccatgttgttgaagtaga
aaggtgaaagatctgaaagatcacatcctcaaccccagtcactaaaaagg
aacagagaattaagatgacttggatctatctattcttttgtctcatagcc
aacccccagtgtcatactttattcagtaatgttccaacaactaaattcct
caaaacattgtgacccactgaggatccaactttaaacgataaaagtacta
tccaataggagatttattctttcatacctatataatcagccttctaatat
ccttgtgctttttaaagtgattttgatatcaatgtagaaaacaaagccct
aatttcttgtatgggtttcctgctcttttgtttgtttttaaaacagggtc
ccacactctagtcctgactttcacatgtcctgatatagagaccagaatgg
cttttaggtcacatccctgagaactaggatgaaagaccttacattgacga
gctgatttttatttatttatttatttatttatttatttatttatttattt
atttattttggctgaatgcagcgtcttcatatattggccactgagttacc
accaggcttaacagagttcatttcttgtttcatttcagagtgagctttcc
ttagatttttatatctttggataaggtgttcacgtcctgcatatgtataa
ttattctcttacccacttgtaggaattctctggaatttcattaagtttgt
ttctgccttcttgaattcctgtgcttgtccctctttatgacatttgtcca
cattgaatgtgttcagattatatttgactttgtctctggagttgtttcat
atcattttgtcatgagatgtatggctttagtgaataggtagggaaattta
tacatgtcagtgctttagctacagcctctcatttcctagctgtgtgtcaa
ctagtcaggtaccgcatccaattgaagcgttgtgaataaactttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146926863_146927921
seq2: B6Ng01-278O09.b_47_1108

seq1  GAATTCAGAGGGACTGCTTAATTGTGTGCATTTTTAGACTAGACTCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGGACTGCTTAATTGTGTGCATTTTTAGACTAGACTCACAA  50

seq1  TGTGAGAAGTTAGGCAGGATCCGTTGTATCTGAAGGGTTCAGAACCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGTTAGGCAGGATCCGTTGTATCTGAAGGGTTCAGAACCCAGG  100

seq1  TGAAGTGTCCTACTACATTCAGTTCTGGTCTAGTCTGGCAGCAACCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTCCTACTACATTCAGTTCTGGTCTAGTCTGGCAGCAACCTTTT  150

seq1  GAGAAGCTGAGTAGAGTAGGTGCTGAGAAGTTGTGTTTCCACAACAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTGAGTAGAGTAGGTGCTGAGAAGTTGTGTTTCCACAACAGAGT  200

seq1  TGGAGGAGTGGTTCCTGATGGGGAGGGTGGGCCTCCTGCATGATTAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGTGGTTCCTGATGGGGAGGGTGGGCCTCCTGCATGATTAGATA  250

seq1  AGTTTAAGAAAAAGACAAAATAAAACGAAGAATCAATCAATCAAAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAAAAAGACAAAATAAAACGAAGAATCAATCAATCAAAAAATC  300

seq1  AATCAATGAATTAAGTAAGTAAGTAAGCAAGCAAGCAAGCAAGTAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGAATTAAGTAAGTAAGTAAGCAAGCAAGCAAGCAAGTAAGCAA  350

seq1  GCAATAATCCAAATCAACAAAAATTGCTCTGAAGAACTGGGAAGCTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATCCAAATCAACAAAAATTGCTCTGAAGAACTGGGAAGCTAATT  400

seq1  AATTAAGAAGTCCTGAAGGAGGTACGCTTAGAAGAATGGCAGGAAGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAGTCCTGAAGGAGGTACGCTTAGAAGAATGGCAGGAAGCTGC  450

seq1  TGAGTATTGGGCGGGTCCAGAAGGAGTGGCTCTGAGGAACCAGGAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTGGGCGGGTCCAGAAGGAGTGGCTCTGAGGAACCAGGAGGAAG  500

seq1  TGACAGGAAGTTCCGCGATTCCAGCCTTCTCCATGTATCTTGGCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAGTTCCGCGATTCCAGCCTTCTCCATGTATCTTGGCTGCCTC  550

seq1  GTGGTCAGGAAGTCATGGAGGGAGACTAGTGCCTAGTGTTTGCAGAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGGAAGTCATGGAGGGAGACTAGTGCCTAGTGTTTGCAGAACCT  600

seq1  GAAAACTTCCTTAAGCTGCAGTTGCTGTGCTGGCTTCCTAGGACATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTCCTTAAGCTGCAGTTGCTGTGCTGGCTTCCTAGGACATTCAG  650

seq1  CAGCTGGTCCTGTCACCTGCCAGGTCAGAGGAGCTCTTGGGTTGGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTCCTGTCACCTGCCAGGTCAGAGGAGCTCTTGGGTTGGGAAAT  700

seq1  GGGTAGGATAGGGCAGGCATGTGGAGCAGGGGTGCATTTTCTGTCGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGATAGGGCAGGCATGTGGAGCAGGGGTGCATTTTCTGTCGCCAC  750

seq1  TCTTACAATTCTGTTGTGGATATCTTACCATTATCAGGAAGTTTGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAATTCTGTTGTGGATATCTTACCATTATCAGGAAGTTTGAGATC  800

seq1  CTGTAAATTGAGTTTATGGTGATGTTTTAATTGATTTTATGGTTGCCA-G  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTAAATTGAGTTTATGGTGATGTTTTAATTGATTTTATGGTTGCCAGG  850

seq1  AATATTTTTCTAAAACAACCCTGTAGATCCTTGGCCCTCTCTGGAGTTTG  899
      |||||||||   ||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTTCTAAACAACCCTGTAGATCCTTGGCCCTCTCTGGAGTTTG  900

seq1  TATACTGGGAGGGTTGTCTTTGCTAAGGCCTTAATAAAGCTCCTCG-ATT  948
      |||||||||||||||||||||||||| ||||||||||| ||||||| |||
seq2  TATACTGGGAGGGTTGTCTTTGCTAAAGCCTTAATAAACCTCCTCGAATT  950

seq1  TCAGATTCATTCATGCTTTCTTAACTCCCCTGTTCCTCCATTTGCCA--T  996
      |||||||||||||||| ||||| |||||||||||||| || ||||||  |
seq2  TCAGATTCATTCATGC-TTCTT-ACTCCCCTGTTCCTTCAATTGCCATGT  998

seq1  TTCATTTCCCTTTCTCCTGCAAACTGAGTAGGCA--TCCCGAGAGAGCTT  1044
      | |||||||||| || |||||||||||||| |||  ||| || |||||||
seq2  TCCATTTCCCTTGCTTCTGCAAACTGAGTATGCATCTCCGGAAAGAGCTT  1048

seq1  TGTAGATATTTGTCA  1059
      |||||||| ||||||
seq2  TGTAGATA-TTGTCA  1062

seq1: chr4_147056736_147057906
seq2: B6Ng01-278O09.g_66_1210 (reverse)

seq1  CAAAGTTTATTCACAACACCTCATATGGAAATCCCTGTCACCTGACCTAA  50
      ||||||||||||||||| | |||  |||  || |  |  |||||| ||| 
seq2  CAAAGTTTATTCACAACGCTTCAATTGG--ATGC--GGTACCTGA-CTAG  45

seq1  ATGACACACAGCTAAAGAAAATTGAGAGGCTGTAGCTAAAGCAATTTGAC  100
       ||||||||||||  || ||| |||||||||||||||||||||   ||||
seq2  TTGACACACAGCT--AGGAAA-TGAGAGGCTGTAGCTAAAGCA--CTGAC  90

seq1  AATGTTAATAAAATTTCCCTAACCTAAATCACTAAACCAATACCAATTCT  150
       ||||  || |||||||||| |||| | |||||||| | ||||    |||
seq2  -ATGT--AT-AAATTTCCCT-ACCT-ATTCACTAAAGCCATAC---ATCT  131

seq1  CATGACAAAATGAATTATGAAACAAACTCAAGAGACAAAAGTCAAAATAT  200
      |||||||||||||  |||||||| ||||| |||||| |||||| ||||||
seq2  CATGACAAAATGA--TATGAAAC-AACTCCAGAGAC-AAAGTC-AAATAT  176

seq1  AATCTGAACACCATTCAATGTGGACAAATGTCATAAAGAGGGAACAAGCA  250
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  AATCTGAACA-CATTCAATGTGGACAAATGTCATAAAGAGGG-ACAAGCA  224

seq1  CAGGAATTCAAGAAGGCAGAAACAAACTTAATGAAATTCCAGAGAATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTCAAGAAGGCAGAAACAAACTTAATGAAATTCCAGAGAATTCC  274

seq1  TACAAGTGGGTAAGAGAATAATTATACATATGCAGGACGTGAACACCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGGGTAAGAGAATAATTATACATATGCAGGACGTGAACACCTTA  324

seq1  TCCAAAGATATAAAAATCTAAGGAAAGCTCACTCTGAAATGAAACAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGATATAAAAATCTAAGGAAAGCTCACTCTGAAATGAAACAAGAA  374

seq1  ATGAACTCTGTTAAGCCTGGTGGTAACTCAGTGGCCAATATATGAAGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCTGTTAAGCCTGGTGGTAACTCAGTGGCCAATATATGAAGACG  424

seq1  CTGCATTCAGCCAAAATAAATAAATAAATAAATAAATAAATAAATAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCAGCCAAAATAAATAAATAAATAAATAAATAAATAAATAAATA  474

seq1  AATAAATAAATAAAAATCAGCTCGTCAATGTAAGGTCTTTCATCCTAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAAAATCAGCTCGTCAATGTAAGGTCTTTCATCCTAGTT  524

seq1  CTCAGGGATGTGACCTAAAAGCCATTCTGGTCTCTATATCAGGACATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATGTGACCTAAAAGCCATTCTGGTCTCTATATCAGGACATGTG  574

seq1  AAAGTCAGGACTAGAGTGTGGGACCCTGTTTTAAAAACAAACAAAAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGACTAGAGTGTGGGACCCTGTTTTAAAAACAAACAAAAGAGC  624

seq1  AGGAAACCCATACAAGAAATTAGGGCTTTGTTTTCTACATTGATATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCCATACAAGAAATTAGGGCTTTGTTTTCTACATTGATATCAAA  674

seq1  ATCACTTTAAAAAGCACAAGGATATTAGAAGGCTGATTATATAGGTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTAAAAAGCACAAGGATATTAGAAGGCTGATTATATAGGTATGA  724

seq1  AAGAATAAATCTCCTATTGGATAGTACTTTTATCGTTTAAAGTTGGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAATCTCCTATTGGATAGTACTTTTATCGTTTAAAGTTGGATCC  774

seq1  TCAGTGGGTCACAATGTTTTGAGGAATTTAGTTGTTGGAACATTACTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGTCACAATGTTTTGAGGAATTTAGTTGTTGGAACATTACTGAA  824

seq1  TAAAGTATGACACTGGGGGTTGGCTATGAGACAAAAGAATAGATAGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATGACACTGGGGGTTGGCTATGAGACAAAAGAATAGATAGATCC  874

seq1  AAGTCATCTTAATTCTCTGTTCCTTTTTAGTGACTGGGGTTGAGGATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTTAATTCTCTGTTCCTTTTTAGTGACTGGGGTTGAGGATGTG  924

seq1  ATCTTTCAGATCTTTCACCTTTCTACTTCAACAACATGGCTATGTTCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAGATCTTTCACCTTTCTACTTCAACAACATGGCTATGTTCTAT  974

seq1  CAGTCCTCCCTGTCATGGTTGATGGCTATCCTCTGGAAGCATTACCCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCCCTGTCATGGTTGATGGCTATCCTCTGGAAGCATTACCCAAA  1024

seq1  GTAGTCTTTTTCTTCTATTAATTTCCTTGAACATGGTGCTTTATGAAAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTTTTCTTCTATTAATTTCCTTGAACATGGTGCTTTATGAAAGC  1074

seq1  AACAGACAAAAATAAATTACAGTAAAACAGATTCTGATTGGATTTAAGGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAAAAATAAATTACAGTAAAACAGATTCTGATTGGATTTAAGGT  1124

seq1  TGCCTTTCAGAGAGAGAATTC  1171
      |||||||||||||||||||||
seq2  TGCCTTTCAGAGAGAGAATTC  1145