BAC Information

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BAC

Clone NameB6Ng01-279A15
Chromosome4 (Build37)
Map Location 144,371,229 - 144,372,424
singlet/doubletsinglet
Overlap geneGm438
Upstream geneOTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849
Downstream geneLOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279A15.bB6Ng01-279A15.g
ACCGA079125GA079126
length1,2081,165
definitionB6Ng01-279A15.b B6Ng01-279A15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttataggatcatcattattaagaagtcatctatttgtctatata
gcaccactaaaagacagtgcatctttgttgttctgctgagagctgctcaa
aaggatgggataatacctaatacaggaaaagcatattaatagcaggaatc
tttcctaaaatgattttctcctgggccttgactatcagagctccactgta
gattttaaatccaaggcaaagttatctcaggaaaatcacctgctagttat
tagcttgtcctctaatggctcctgacaagttctgaagttgacagagaaac
tgttcagagggaagtttgataagcacaccgtatctatctaatcaatcaga
atcagggccatcccctctgagaactttggtttccacagccagtggtatac
aatatcaaacaaactgctgtgtagcagggcttacacgatcttgattgtcc
catgatatttatgtcactatttcacaaacagacacactttgcctggcatt
taatactgtagaatgcagggaccatacctgagtagggttttggtgatagc
tctcctttcaatcccatatatagcaccttctgactttatggaagatagcc
agtaagcagggaatttccagcttttcccagttttatttctccatgtattg
cacccagagcacatggtgtctttagcaatagtcttcttgtctaggcctgg
catgaatctgatgccactggcaagagcctttatatttttggaggcctcat
atacttcctttgctaacagtttgtagggaggcaacccatctctggaacct
ggggttttaaatttaacaaatttattgtctgaatagtatattaaaagatg
tatccaggcccagttggattgtatagtaggtggaaagattgtaaagtagg
attgaaccttcactcaccacatatttccacatcattttgtcaaataacta
ctcttgtcatcatcaattctctatatgtgttcctacttaccacttattta
tatgaagatgcttgctggtgggctttcaatagttttggtgctttttttta
acatgcaaaatgttttcaagaagccctgcactggtgtccttgtaaggcat
gtattgcatgtaatgcatgtcctcacccaaatgctaggatttatacattg
gtaccttaccagttcgtatgtaactgctctactaaccttctccactgggg
cctaaaag
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcagaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggctcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaatgaatttatgaaattcctaggcaaat
ggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaagg
aactcgcacaataagtactcactgataagtggatattagcccagaaactt
aggatacccaagatataagatacaacttgccaaacgcatgaaattcaaga
agaacgaagaccaaagtgtggacactctaccctttcttagaaatgggaac
aaaacacccatagaaggagttacagagacaaaatttggagctgtgacgaa
aggatggaccatctagtgattgtcatatgcagggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctctctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgatcacagtcagctattggatgggtcacacggcccttat
ggaggagctagagaatacccaagagctcagcgacctgcaccctatagtgg
aacacatatgaactaccagtacccgggagctctttgtctttagctgcata
ttgtatcaagatgctagtccgttcatcacttgcaaggaagtcatgacctt
gcaactctatatgcctagtcaggttaactcaagtcaaaggtcatggggtg
gtatgtacattgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144371229_144372424
seq2: B6Ng01-279A15.b_50_1257 (reverse)

seq1  CTTTTAG--CCCAGTGGAGAAG--TAGATGAGGCATGTACATAGGGAACT  46
      |||||||  |||||||||||||  |||  || |||  ||||||  |||||
seq2  CTTTTAGGCCCCAGTGGAGAAGGTTAGTAGA-GCAGTTACATA-CGAACT  48

seq1  GGTAA-GTA-CAATGTATAAATCCTATGCATTTGGGTGA-GACATGCA-T  92
      ||||| ||| |||||||||||||||| |||||||||||| |||||||| |
seq2  GGTAAGGTACCAATGTATAAATCCTA-GCATTTGGGTGAGGACATGCATT  97

seq1  ACATGC-ATACATGCC-TACAAGGACACCAGTGCA-GGCTTCTTGAAAAC  139
      |||||| ||||||||| |||||||||||||||||| ||||||||||||||
seq2  ACATGCAATACATGCCTTACAAGGACACCAGTGCAGGGCTTCTTGAAAAC  147

seq1  A-TTTGCATGTTTAAAAAAAAACCAC--AAACTA-TGAAAG-CCACCAGC  184
      | ||||||||||  |||||||| |||  |||||| |||||| ||||||||
seq2  ATTTTGCATGTT--AAAAAAAAGCACCAAAACTATTGAAAGCCCACCAGC  195

seq1  AAGCATC-TCATATAAATAAGTGGTAAGTAGGAACACATATAGAGAATTG  233
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTCATATAAATAAGTGGTAAGTAGGAACACATATAGAGAATTG  245

seq1  ATGATGACAAGAGTAGTTATTTGACAAAATGATGTGGAAATATGTGGTGA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACAAGAGTAGTTATTTGACAAAATGATGTGGAAATATGTGGTGA  295

seq1  GTGAAGGTTCAATCCTACTTTACAATCTTTCCACCTACTATACAATCCAA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTTCAATCCTACTTTACAATCTTTCCACCTACTATACAATCCAA  345

seq1  CTGGGCCTGGATACATCTTTTAATATACTATTCAGACAATAAATTTGTTA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGGATACATCTTTTAATATACTATTCAGACAATAAATTTGTTA  395

seq1  AATTTAAAACCCCAGGTTCCAGAGATGGGTTGCCTCCCTACAAACTGTTA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACCCCAGGTTCCAGAGATGGGTTGCCTCCCTACAAACTGTTA  445

seq1  GCAAAGGAAGTATATGAGGCCTCCAAAAATATAAAGGCTCTTGCCAGTGG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAGTATATGAGGCCTCCAAAAATATAAAGGCTCTTGCCAGTGG  495

seq1  CATCAGATTCATGCCAGGCCTAGACAAGAAGACTATTGCTAAAGACACCA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATTCATGCCAGGCCTAGACAAGAAGACTATTGCTAAAGACACCA  545

seq1  TGTGCTCTGGGTGCAATACATGGAGAAATAAAACTGGGAAAAGCTGGAAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGGGTGCAATACATGGAGAAATAAAACTGGGAAAAGCTGGAAA  595

seq1  TTCCCTGCTTACTGGCTATCTTCCATAAAGTCAGAAGGTGCTATATATGG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTTACTGGCTATCTTCCATAAAGTCAGAAGGTGCTATATATGG  645

seq1  GATTGAAAGGAGAGCTATCACCAAAACCCTACTCAGGTATGGTCCCTGCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAGGAGAGCTATCACCAAAACCCTACTCAGGTATGGTCCCTGCA  695

seq1  TTCTACAGTATTAAATGCCAGGCAAAGTGTGTCTGTTTGTGAAATAGTGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGTATTAAATGCCAGGCAAAGTGTGTCTGTTTGTGAAATAGTGA  745

seq1  CATAAATATCATGGGACAATCAAGATCGTGTAAGCCCTGCTACACAGCAG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATCATGGGACAATCAAGATCGTGTAAGCCCTGCTACACAGCAG  795

seq1  TTTGTTTGATATTGTATACCACTGGCTGTGGAAACCAAAGTTCTCAGAGG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGATATTGTATACCACTGGCTGTGGAAACCAAAGTTCTCAGAGG  845

seq1  GGATGGCCCTGATTCTGATTGATTAGATAGATACGGTGTGCTTATCAAAC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCCTGATTCTGATTGATTAGATAGATACGGTGTGCTTATCAAAC  895

seq1  TTCCCTCTGAACAGTTTCTCTGTCAACTTCAGAACTTGTCAGGAGCCATT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTGAACAGTTTCTCTGTCAACTTCAGAACTTGTCAGGAGCCATT  945

seq1  AGAGGACAAGCTAATAACTAGCAGGTGATTTTCCTGAGATAACTTTGCCT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAAGCTAATAACTAGCAGGTGATTTTCCTGAGATAACTTTGCCT  995

seq1  TGGATTTAAAATCTACAGTGGAGCTCTGATAGTCAAGGCCCAGGAGAAAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAAAATCTACAGTGGAGCTCTGATAGTCAAGGCCCAGGAGAAAA  1045

seq1  TCATTTTAGGAAAGATTCCTGCTATTAATATGCTTTTCCTGTATTAGGTA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAGGAAAGATTCCTGCTATTAATATGCTTTTCCTGTATTAGGTA  1095

seq1  TTATCCCATCCTTTTGAGCAGCTCTCAGCAGAACAACAAAGATGCACTGT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCATCCTTTTGAGCAGCTCTCAGCAGAACAACAAAGATGCACTGT  1145

seq1  CTTTTAGTGGTGCTATATAGACAAATAGATGACTTCTTAATAATGATGAT  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTGGTGCTATATAGACAAATAGATGACTTCTTAATAATGATGAT  1195

seq1  CCTATAAGAATTC  1196
      |||||||||||||
seq2  CCTATAAGAATTC  1208